mRNA_E-fasciculatus_F_contig15546.3859.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: D7FLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM7_ECTSI) HSP 1 Score: 238 bits (607), Expect = 2.770e-71 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALEALGKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP 372
+ANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKL+RHHVALHYFQKALEALGKGGEAG DVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP
Sbjct: 343 KANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLKRHHVALHYFQKALEALGKGGEAGADVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP 460
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A836CBQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ7_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.940e-39 Identity = 77/118 (65.25%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALEALGKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP 372
+ANLEYLRDN++KALKLLASCHGFQG+EEY+GPGE GP Y NNMGCLHHKL +HH ALHYF KAL A+ G AG G A A R DG V+ CE+LYN GLQLLLT +P
Sbjct: 367 KANLEYLRDNYKKALKLLASCHGFQGSEEYAGPGEPAGPHYHNNMGCLHHKLGKHHAALHYFNKALAAVADGMRAGA-TGALACGAER----DGRVAGGIACEILYNAGLQLLLTAQP 479
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A6H5J7B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B5_9PHAE) HSP 1 Score: 141 bits (355), Expect = 4.540e-37 Identity = 73/96 (76.04%), Postives = 76/96 (79.17%), Query Frame = 1
Query: 85 GFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALEALGKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP 372
G + A +S G GCLHHKLRRHHVALHYFQKALEALGKGGEAG V GEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLT+KP
Sbjct: 4 GIRLASLWSTGGVRANNQTLERRGCLHHKLRRHHVALHYFQKALEALGKGGEAGASVSGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTDKP 99
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: K8YV70_NANGC (CCR4-NOT transcription complex subunit 10 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV70_NANGC) HSP 1 Score: 98.2 bits (243), Expect = 2.320e-21 Identity = 59/121 (48.76%), Postives = 71/121 (58.68%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALEALGK-------GGEAGKDVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLL 360
+ANLEYLR N+RKALKLLASCH G A+G Y N+MGCLH K+ H VAL YFQ+A+ + G+ G AG+ G GR DG V P CE+ YNTGLQLL+
Sbjct: 330 KANLEYLRQNYRKALKLLASCH--------RGEDSAMGAAYLNDMGCLHSKMGLHSVALQYFQRAVASSGQDRPASANGSPAGETPGMPLLPGGRPLETDGRVLPHTFCEIAYNTGLQLLI 442
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A7S0EVC9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EVC9_9EUKA) HSP 1 Score: 72.8 bits (177), Expect = 1.810e-12 Identity = 50/128 (39.06%), Postives = 63/128 (49.22%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLA-SCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALE---ALGKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPT------CEVLYNTGLQLLLTEKP 372
++NLEYLR N+RKA+KLL SC + S V YFNNMGC+HH +RRH A YF +AL+ AL G + H P CE+ YN GLQLLL+ +P
Sbjct: 288 KSNLEYLRQNYRKAIKLLNNSC-------QRSDRDPNVSALYFNNMGCIHHLMRRHTAACFYFTRALQENDALYSGADKAPSA--------------AHKISLPAFACDRRCEIHYNKGLQLLLSSRP 394
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A7R9YFP9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFP9_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.830e-12 Identity = 50/133 (37.59%), Postives = 65/133 (48.87%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPP-------------YFNNMGCLHHKLRRHHVALHYFQKALEAL--GKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP 372
+AN EYLR+N++K LKLL + E+++ P A + NNMGCLH +L R VALHYFQ+AL L KG G E + P+ +LYNTGLQLLL +P
Sbjct: 318 KANYEYLRNNYKKVLKLLDAASRGANEEQHAQPSAATAGGEQHSILTPSMRILFLNNMGCLHLRLHRARVALHYFQQALSELENAKGSRKTTSSGQEQM----------DLEVLPSENILYNTGLQLLLVGRP 440
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A0M0LPX6_9EUKA (Ccr4-not transcription complex subunit 10 isoform 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPX6_9EUKA) HSP 1 Score: 70.1 bits (170), Expect = 1.590e-11 Identity = 56/130 (43.08%), Postives = 66/130 (50.77%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLA-SCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKAL---EALGKGGEAGKDVGGEAAAAGRGGGKDGHVSPA--PT------CEVLYNTGLQLLLTEKP 372
+ NLE+ R N RKA+KLL SC G+E V YFNNMGC+HH +RRH A YF KAL +AL + A AA G K G P PT CE+ YN GLQ LL+ KP
Sbjct: 261 KCNLEWQRQNFRKAIKLLNNSCQA--GSERERN----VPALYFNNMGCIHHCMRRHQAAAFYFTKALRENDALYR----------SAPAATAGSAKPGAAEPIALPTYSCDRRCELEYNRGLQYLLSGKP 374
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A6J8CNC8_MYTCO (CCR4-NOT transcription complex subunit 10 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CNC8_MYTCO) HSP 1 Score: 68.6 bits (166), Expect = 5.310e-11 Identity = 40/125 (32.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALEA-------LGKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP 372
++N EY+R NHRKA+K++ + ++ GE + Y NNMGC+H LR+HH+ YF+KA++ + +G E K++ G+ + + + E+LYN G+Q+L KP
Sbjct: 77 KSNFEYMRSNHRKAMKMMGIAPS--SSTLFTEAGECLPVMYHNNMGCIHFYLRKHHLGAFYFRKAIQENENALRDITRGAEHNKNLSGKPLHS---------IGMSRHYELLYNMGIQMLHCGKP 190
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A140D2R9_MYTGA (CCR4-NOT transcription complex subunit 10 n=4 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A140D2R9_MYTGA) HSP 1 Score: 68.6 bits (166), Expect = 5.490e-11 Identity = 40/125 (32.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 19 QANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALEA-------LGKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPTCEVLYNTGLQLLLTEKP 372
++N EY+R NHRKA+K++ + ++ GE + Y NNMGC+H LR+HH+ YF+KA++ + +G E K++ G+ + + + E+LYN G+Q+L KP
Sbjct: 246 KSNFEYMRSNHRKAMKMMGIAPS--SSTLFTEAGECLPVMYHNNMGCIHFYLRKHHLGAFYFRKAIQENENALRDITRGAEHNKNLSGKPLHS---------IGMSRHYELLYNMGIQMLHCGKP 359
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Match: A0A7S3LL73_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL73_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 7.390e-11 Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 1
Query: 13 LC-QANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNMGCLHHKLRRHHVALHYFQKALEALGKGGEAGKDVGGEAAAAGRGGGKDGHVSPAPTC--EVLYNTGLQLLLTEKP 372
LC +ANLEYLR NHRK +KLL SC +G + + +FNNMGC+HH L +H A YF ++L+ K GE + G+ + + C VL NTG+QLL T +P
Sbjct: 167 LCLKANLEYLRVNHRKCIKLLQSC-------SKAGLDKGI---FFNNMGCIHHTLGQHRCASMYFARSLDVYQK-------ENGEVSGNGKKRQRSRKKISSQPCVYNVLLNTGVQLLHTGRP 272 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15546.3859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15546.3859.1 >prot_E-fasciculatus_F_contig15546.3859.1 ID=prot_E-fasciculatus_F_contig15546.3859.1|Name=mRNA_E-fasciculatus_F_contig15546.3859.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp PYTHLCQANLEYLRDNHRKALKLLASCHGFQGAEEYSGPGEAVGPPYFNNback to top mRNA from alignment at E-fasciculatus_F_contig15546:684..1755+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15546.3859.1 ID=mRNA_E-fasciculatus_F_contig15546.3859.1|Name=mRNA_E-fasciculatus_F_contig15546.3859.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1072bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15546:684..1755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15546:684..1755+ >mRNA_E-fasciculatus_F_contig15546.3859.1 ID=mRNA_E-fasciculatus_F_contig15546.3859.1|Name=mRNA_E-fasciculatus_F_contig15546.3859.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15546:684..1755+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |