mRNA_E-fasciculatus_F_contig15523.3852.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15523.3852.1
Unique NamemRNA_E-fasciculatus_F_contig15523.3852.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15523.3852.1 vs. uniprot
Match: D7FTT1_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTT1_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 7.730e-48
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:  220 AAVSLAGAVLLSRAPAAAAVGDQPTIAGSRAPPMVSSWTKA-PREGRRRIRNADLHRDRPPEPLSTTNLAAMLRGGWLGVDLVQEIAKAYLKPPAGEGGEGAAG 528
            AAVSLAGAVLLSRAPAAA VG++PTI GSRAPPM SSWTKA PREGRRRIRNADLHRDRPPEPLS+TNLAAMLRGGWLGVDLVQEIAKAYLKPPAGEGGE A G
Sbjct:    3 AAVSLAGAVLLSRAPAAAVVGEKPTIVGSRAPPMASSWTKAAPREGRRRIRNADLHRDRPPEPLSSTNLAAMLRGGWLGVDLVQEIAKAYLKPPAGEGGEAAGG 106
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15523.3852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTT1_ECTSI7.730e-4891.35AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15523contigE-fasciculatus_F_contig15523:46..1718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue4.5e-42
Seed eggNOG ortholog2880.D7FTT1
KEGG koko:K03798,ko:K08956,ko:K09552
KEGG ModuleM00742
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase M41
Ec32 orthologEc-25_001430.1
Exons2
Model size595
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.6433513-CDS-E-fasciculatus_F_contig15523:47..2981622928027.6433513-CDS-E-fasciculatus_F_contig15523:47..298Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15523 48..298 -
1695995794.4862823-CDS-E-fasciculatus_F_contig15523:47..2981695995794.4862823-CDS-E-fasciculatus_F_contig15523:47..298Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15523 48..298 -
1622928027.6579864-CDS-E-fasciculatus_F_contig15523:1378..17181622928027.6579864-CDS-E-fasciculatus_F_contig15523:1378..1718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15523 1379..1718 -
1695995794.496695-CDS-E-fasciculatus_F_contig15523:1378..17181695995794.496695-CDS-E-fasciculatus_F_contig15523:1378..1718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15523 1379..1718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15523.3852.1prot_E-fasciculatus_F_contig15523.3852.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15523 48..1718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15523.3852.1

>prot_E-fasciculatus_F_contig15523.3852.1 ID=prot_E-fasciculatus_F_contig15523.3852.1|Name=mRNA_E-fasciculatus_F_contig15523.3852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=197bp
PQLLSYTHLLRRQGSTPTADGTERVINCESASLLLVEAGGRESAPILHPS
CRTGTHTRGSLHFQESSSNIMKAAAVSLAGAVLLSRAPAAAAVGDQPTIA
GSRAPPMVSSWTKAPREGRRRIRNADLHRDRPPEPLSTTNLAAMLRGGWL
GVDLVQEIAKAYLKPPAGEGGEGAAGGGEGKGAEQQAADGGGRGQGR
back to top

mRNA from alignment at E-fasciculatus_F_contig15523:46..1718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15523.3852.1 ID=mRNA_E-fasciculatus_F_contig15523.3852.1|Name=mRNA_E-fasciculatus_F_contig15523.3852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1673bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15523:46..1718- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCAGCTCTTGTCTTATACACACCTCTTACGTAGGCAAGGATCAACACC
GACTGCAGACGGGACCGAGAGAGTGATAAATTGTGAATCGGCCTCCCTGT
TGCTGGTCGAAGCCGGCGGTCGGGAGAGCGCTCCGATACTGCACCCTTCT
TGCCGAACAGGCACGCACACACGTGGTTCTCTCCACTTCCAAGAGAGCAG
CAGCAACATCATGAAGGCAGCTGCTGTTTCTCTCGCGGGCGCGGTGCTTT
TATCGCGGGCTCCAGCTGCAGCGGCGGTGGGGGACCAGCCTACCATCGCT
GGATCTAGGGCACCGCCAATGGTTTCGTCGTGGACGAAAGGTACGAAAAA
GTATCGTTACCTCGTGTGCCGTGTAGAAACATCAGCTCCGAGCGGCGTGA
TTTCGACAGACGGCAAGGGCAAGGAGCTTGTTGTAGTCACACGCCAAGCG
AAACAGAGTATTGTACGACAGCAGTACAATAGCACTCCTCTTGTAGGGTT
TATCATGGCGTTCTCCTTTCCCCTCTCGCTTCCCGCTCCCAGCGGATCTT
TTTGTTATTTTCCACTGGCTTCAACGGAGGTGCAACGCCAACAACGCACG
TATCGAAAGTTTAAAGTTAGCTCTGTGGGTCGTACAGGTGTCCCGTTGCC
TCCCAATGTATCGGTACACAACAGGCGCACGCTATTCGTGTGCATGTTGA
CCTGCTACGTGTACGGACGGCCATGTGCTGATTCTAGCACCCGTTTGCGC
TGCTTGTTCGTGGGTGCTCCTAAGCCGTAGGCGTCACTCTCTCTCTCTCT
CTCTCTCTCTGACTTCTGGCCTGTACAGACCTCGCTCCCTTGTTATCCAC
TGCACCTCAATGGATTTCGAACGAACGTTCCGTTCGCGAGTCACTCTTCT
GCCTGTTTCCCACAAGAACAAAAGGTTTTAGCACGCAAGTTTGGGTATGT
GTGATGCATCATCTCACTTTTCGCTCCAACCTTCCGTTTGTGGCTGGTGT
CCAAATCCCTCCTGCGCTGGGCTCCAAAATCTAGTCTCTGTCTGTGCACG
TCGTTGACAACTTCATCTCGAGAGAGAAAAGAGAACTGGCCCTCCCACTT
TGCCGCCTGCATCTCGTTCCAGCTAATCTCCAAAACCTGCGCGCCGCACC
GTTCTTGTTCCGTATCACACCCTACCCTTTCCGTACAGTCCTTGTTCCGT
ATCACACCTGTCACACGCTACCCACCCCGGCTCCTTTCGAACGATCCTTG
TTCCGTATCACACCCTACCCACCCAACCCCCTTCGAACAGGTCTTATTCC
CTATCACACCCGTCCCATTTTCGAACGGCCCTTGTTCCCGTTGTTCCGTA
TCACACCCTAACCGACCCATTCCCATCCCGCCCTTGTTCCGTATCACACA
CCGCCCATCCCGAGCACCAGCCCCGCGGGAAGGCCGAAGGCGCATCCGGA
ACGCCGACCTCCACCGCGATCGCCCCCCAGAGCCCCTCTCCACCACCAAC
CTCGCTGCCATGCTGAGGGGAGGCTGGCTCGGCGTTGACTTAGTCCAGGA
GATCGCCAAGGCCTACCTGAAGCCCCCCGCGGGGGAAGGCGGCGAGGGGG
CAGCGGGTGGAGGAGAGGGCAAGGGGGCGGAGCAGCAGGCAGCCGACGGT
GGAGGGCGGGGCCAGGGGCGGAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15523:46..1718-

>mRNA_E-fasciculatus_F_contig15523.3852.1 ID=mRNA_E-fasciculatus_F_contig15523.3852.1|Name=mRNA_E-fasciculatus_F_contig15523.3852.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15523:46..1718- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCAGCTCTTGTCTTATACACACCTCTTACGTAGGCAAGGATCAACACC
GACTGCAGACGGGACCGAGAGAGTGATAAATTGTGAATCGGCCTCCCTGT
TGCTGGTCGAAGCCGGCGGTCGGGAGAGCGCTCCGATACTGCACCCTTCT
TGCCGAACAGGCACGCACACACGTGGTTCTCTCCACTTCCAAGAGAGCAG
CAGCAACATCATGAAGGCAGCTGCTGTTTCTCTCGCGGGCGCGGTGCTTT
TATCGCGGGCTCCAGCTGCAGCGGCGGTGGGGGACCAGCCTACCATCGCT
GGATCTAGGGCACCGCCAATGGTTTCGTCGTGGACGAAAGCCCCAGCTCT
TGTCTTATACACACCTCTTACGTAGGCAAGGATCAACACCGACTGCAGAC
GGGACCGAGAGAGTGATAAATTGTGAATCGGCCTCCCTGTTGCTGGTCGA
AGCCGGCGGTCGGGAGAGCGCTCCGATACTGCACCCTTCTTGCCGAACAG
GCACGCACACACGTGGTTCTCTCCACTTCCAAGAGAGCAGCAGCAACATC
ATGAAGGCAGCTGCTGTTTCTCTCGCGGGCGCGGTGCTTTTATCGCGGGC
TCCAGCTGCAGCGGCGGTGGGGGACCAGCCTACCATCGCTGGATCTAGGG
CACCGCCAATGGTTTCGTCGTGGACGAAAGCCCCGCGGGAAGGCCGAAGG
CGCATCCGGAACGCCGACCTCCACCGCGATCGCCCCCCAGAGCCCCTCTC
CACCACCAACCTCGCTGCCATGCTGAGGGGAGGCTGGCTCGGCGTTGACT
TAGTCCAGGAGATCGCCAAGGCCTACCTGAAGCCCCCCGCGGGGGAAGGC
GGCGAGGGGGCAGCGGGTGGAGGAGAGGGCAAGGGGGCGGAGCAGCAGGC
AGCCGACGGTGGAGGGCGGGGCCAGGGGCGGCCCCGCGGGAAGGCCGAAG
GCGCATCCGGAACGCCGACCTCCACCGCGATCGCCCCCCAGAGCCCCTCT
CCACCACCAACCTCGCTGCCATGCTGAGGGGAGGCTGGCTCGGCGTTGAC
TTAGTCCAGGAGATCGCCAAGGCCTACCTGAAGCCCCCCGCGGGGGAAGG
CGGCGAGGGGGCAGCGGGTGGAGGAGAGGGCAAGGGGGCGGAGCAGCAGG
CAGCCGACGGTGGAGGGCGGGGCCAGGGGCGG
back to top