mRNA_E-fasciculatus_F_contig15473.3829.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15473.3829.1
Unique NamemRNA_E-fasciculatus_F_contig15473.3829.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15473.3829.1 vs. uniprot
Match: D7FK84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK84_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 3.020e-67
Identity = 155/253 (61.26%), Postives = 164/253 (64.82%), Query Frame = 1 
Query:    1 RNSKEWVSPEHQEEAFNLIGLHLADCHRALMPIKTAAGTAIFWPKVATSKRLLETTATFAALCQGKGETITQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFN---------SSSHALAGSGNITVRQSSLSRWGGSAKKEASTLAPTPTSVTTRSSSREGGASLGRQRKHAPAKVSVSSDVMFVPYRSPTRRANPRGTSLRGSGAIAGR 732
            R SKEWV+P+HQ EAFNLIGLHLA+C++AL P KTAAG AIFWP+VA SK L + TATFAALCQGKGET  +Q                                                     XXXXXXXXXXXXXXXXXX           SSSHA +GS NITVRQSSLSRW   A KEASTL  T TSVT RSSSREG  SLGRQRKHAPAKVSVS  VMFVPYRSPTRRANPRGTSLRGSGAIAGR
Sbjct:  168 RGSKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTAAGAAIFWPEVAPSKGLQDRTATFAALCQGKGETTAKQQQLEGQLASSSASSPLSSPDKSGKSKVFFAYPCHHRLGSTSSSTGSGRTVAPSXXXXXXXXXXXXXXXXXXXXXTPSSFFSISSSHAFSGSENITVRQSSLSRWTKIANKEASTLVSTSTSVTIRSSSREGVVSLGRQRKHAPAKVSVSPGVMFVPYRSPTRRANPRGTSLRGSGAIAGR 420
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BLAST of mRNA_E-fasciculatus_F_contig15473.3829.1 vs. uniprot
Match: D7FKA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.320e-27
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 RNSKEWVSPEHQEEAFNLIGLHLADCHRALMPIKTAAGTAIFWPKVATSKRLLETTATFAALCQGKGETITQQ 219
            R+SKEWV+P+HQ +AFNLIGLHLA+CH+AL+PIKTAAG AIFWP+VA SK L + TATFA LCQGKGET  +Q
Sbjct:  168 RSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAAGAAIFWPEVAPSKGLQDRTATFATLCQGKGETTAKQ 240
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BLAST of mRNA_E-fasciculatus_F_contig15473.3829.1 vs. uniprot
Match: D8LM82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM82_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.620e-12
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  598 GRQRKHAPAKVSVSSDVMFVPYRSPTRRANPRGTSLRGSGAIAGR 732
            GRQ+KHAP+KV VS  V FVPYRSPT R NPRG+SLRGSGAIAGR
Sbjct:  321 GRQKKHAPSKVPVSPGVAFVPYRSPTSRTNPRGSSLRGSGAIAGR 365
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15473.3829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK84_ECTSI3.020e-6761.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKA1_ECTSI1.320e-2773.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LM82_ECTSI2.620e-1280.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15473contigE-fasciculatus_F_contig15473:394..1787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_003130.1
Exons2
Model size735
Cds size735
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928024.615581-CDS-E-fasciculatus_F_contig15473:393..5011622928024.615581-CDS-E-fasciculatus_F_contig15473:393..501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15473 394..501 +
1695995792.9520333-CDS-E-fasciculatus_F_contig15473:393..5011695995792.9520333-CDS-E-fasciculatus_F_contig15473:393..501Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15473 394..501 +
1622928024.629743-CDS-E-fasciculatus_F_contig15473:1160..17871622928024.629743-CDS-E-fasciculatus_F_contig15473:1160..1787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15473 1161..1787 +
1695995792.9610214-CDS-E-fasciculatus_F_contig15473:1160..17871695995792.9610214-CDS-E-fasciculatus_F_contig15473:1160..1787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15473 1161..1787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15473.3829.1prot_E-fasciculatus_F_contig15473.3829.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15473 394..1787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15473.3829.1

>prot_E-fasciculatus_F_contig15473.3829.1 ID=prot_E-fasciculatus_F_contig15473.3829.1|Name=mRNA_E-fasciculatus_F_contig15473.3829.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=245bp
RNSKEWVSPEHQEEAFNLIGLHLADCHRALMPIKTAAGTAIFWPKVATSK
RLLETTATFAALCQGKGETITQQQQQQQVQGQLASSSYSPGKGRKTKAFF
PCPPPHRLGSTSSGTGSGRTAAPSDDDDDGTLSPASSSPSPSFFFNSSSH
ALAGSGNITVRQSSLSRWGGSAKKEASTLAPTPTSVTTRSSSREGGASLG
RQRKHAPAKVSVSSDVMFVPYRSPTRRANPRGTSLRGSGAIAGR*
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mRNA from alignment at E-fasciculatus_F_contig15473:394..1787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15473.3829.1 ID=mRNA_E-fasciculatus_F_contig15473.3829.1|Name=mRNA_E-fasciculatus_F_contig15473.3829.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1394bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15473:394..1787+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAACTCCAAGGAATGGGTTTCCCCGGAGCACCAGGAAGAGGCCTTCAA
CCTCATCGGCCTCCACCTCGCTGACTGCCACAGGGCACTCATGCCGATCA
AGACTGCGGTGAGTGCCGATTCGACGAATCCGTCAGGCGTGTGTGAAGAT
TGGGACGACACATGCTGCTCCACGGTCAGATTCGTCGTGCACGCAAAGGC
ATGGCTCTCGTGTCACGCAGCGCAGTGCTTTTTTCTGCTTCCCGGTACAC
AACCTGTCGGTATTGTACATACCGCAGTATGCTTCGACCCCCGTATTGAT
GGTCCTTCTAAACAAACCGACCGAGCAGCAGGGACAATGTTAGGGTTCCC
TGGGTACGAGGTGATTCTTCTTCGAGGAACATACCCCCGCCTCTTGGTAG
ATGTTGTGCAGCATATCCACCCCAGTTGTTTCATTTCCCGCCGGTATTCG
TTCGTGGCTGTTTTCGCATATATCATCAACACATGTTTTTGGGGCGGATC
AAGACGTCTGTCTTATAGGCACTACGCGTGCATTGCCGTATGTGAAAGGC
CGTGCGTGGCGGTGCAAGTGGTACATATGTTGCAATTGTTGTTGGTCGTG
ATGAACGCGAAAGACTCGAAATGAACGTGTTCGTTGTTAGGTCACATCCT
GCACCACGGAACGCCTCCATCCCGTTGCTGTTGGTTTTACTACAATACGT
GGGGTGATTGTTCTCTGCCTCAGACCGGAAATTGATCTCCTTGATTCTGT
TCCCCTTGTCCTTCCAGGCTGGCACGGCCATCTTCTGGCCCAAGGTGGCC
ACGAGCAAGAGGCTGCTGGAAACGACCGCCACGTTCGCCGCCCTGTGCCA
AGGGAAGGGCGAGACGATCACCCAACAGCAGCAGCAGCAGCAGGTGCAGG
GTCAACTGGCCTCCTCCTCCTACTCTCCGGGGAAGGGCCGCAAGACCAAG
GCCTTCTTTCCATGCCCCCCCCCTCACCGCCTCGGCAGTACGTCAAGCGG
CACTGGGAGCGGCCGCACTGCGGCCCCCTCGGACGACGACGACGACGGCA
CTCTTTCGCCGGCCTCTTCATCGCCGTCGCCATCGTTCTTCTTCAACTCC
TCCTCCCACGCCCTCGCTGGGAGTGGGAACATTACCGTCAGGCAGTCGTC
GCTGTCTCGGTGGGGCGGGAGCGCCAAGAAGGAGGCGTCGACACTGGCTC
CGACGCCGACGTCGGTCACCACCCGCTCGTCTTCTCGAGAGGGGGGGGCG
TCGCTGGGCCGCCAGAGAAAACACGCCCCGGCCAAGGTGTCAGTGTCCTC
GGACGTGATGTTCGTGCCCTACAGAAGCCCGACCCGCCGCGCTAACCCGA
GGGGCACGAGCCTGCGCGGAAGCGGCGCGATCGCCGGTCGATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15473:394..1787+

>mRNA_E-fasciculatus_F_contig15473.3829.1 ID=mRNA_E-fasciculatus_F_contig15473.3829.1|Name=mRNA_E-fasciculatus_F_contig15473.3829.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1470bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15473:394..1787+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAACTCCAAGGAATGGGTTTCCCCGGAGCACCAGGAAGAGGCCTTCAA
CCTCATCGGCCTCCACCTCGCTGACTGCCACAGGGCACTCATGCCGATCA
AGACTGCGAGAAACTCCAAGGAATGGGTTTCCCCGGAGCACCAGGAAGAG
GCCTTCAACCTCATCGGCCTCCACCTCGCTGACTGCCACAGGGCACTCAT
GCCGATCAAGACTGCGGCTGGCACGGCCATCTTCTGGCCCAAGGTGGCCA
CGAGCAAGAGGCTGCTGGAAACGACCGCCACGTTCGCCGCCCTGTGCCAA
GGGAAGGGCGAGACGATCACCCAACAGCAGCAGCAGCAGCAGGTGCAGGG
TCAACTGGCCTCCTCCTCCTACTCTCCGGGGAAGGGCCGCAAGACCAAGG
CCTTCTTTCCATGCCCCCCCCCTCACCGCCTCGGCAGTACGTCAAGCGGC
ACTGGGAGCGGCCGCACTGCGGCCCCCTCGGACGACGACGACGACGGCAC
TCTTTCGCCGGCCTCTTCATCGCCGTCGCCATCGTTCTTCTTCAACTCCT
CCTCCCACGCCCTCGCTGGGAGTGGGAACATTACCGTCAGGCAGTCGTCG
CTGTCTCGGTGGGGCGGGAGCGCCAAGAAGGAGGCGTCGACACTGGCTCC
GACGCCGACGTCGGTCACCACCCGCTCGTCTTCTCGAGAGGGGGGGGCGT
CGCTGGGCCGCCAGAGAAAACACGCCCCGGCCAAGGTGTCAGTGTCCTCG
GACGTGATGTTCGTGCCCTACAGAAGCCCGACCCGCCGCGCTAACCCGAG
GGGCACGAGCCTGCGCGGAAGCGGCGCGATCGCCGGTCGATAGGCTGGCA
CGGCCATCTTCTGGCCCAAGGTGGCCACGAGCAAGAGGCTGCTGGAAACG
ACCGCCACGTTCGCCGCCCTGTGCCAAGGGAAGGGCGAGACGATCACCCA
ACAGCAGCAGCAGCAGCAGGTGCAGGGTCAACTGGCCTCCTCCTCCTACT
CTCCGGGGAAGGGCCGCAAGACCAAGGCCTTCTTTCCATGCCCCCCCCCT
CACCGCCTCGGCAGTACGTCAAGCGGCACTGGGAGCGGCCGCACTGCGGC
CCCCTCGGACGACGACGACGACGGCACTCTTTCGCCGGCCTCTTCATCGC
CGTCGCCATCGTTCTTCTTCAACTCCTCCTCCCACGCCCTCGCTGGGAGT
GGGAACATTACCGTCAGGCAGTCGTCGCTGTCTCGGTGGGGCGGGAGCGC
CAAGAAGGAGGCGTCGACACTGGCTCCGACGCCGACGTCGGTCACCACCC
GCTCGTCTTCTCGAGAGGGGGGGGCGTCGCTGGGCCGCCAGAGAAAACAC
GCCCCGGCCAAGGTGTCAGTGTCCTCGGACGTGATGTTCGTGCCCTACAG
AAGCCCGACCCGCCGCGCTAACCCGAGGGGCACGAGCCTGCGCGGAAGCG
GCGCGATCGCCGGTCGATAG
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