mRNA_E-fasciculatus_F_contig15409.3791.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15409.3791.1
Unique NamemRNA_E-fasciculatus_F_contig15409.3791.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15409.3791.1 vs. uniprot
Match: D7FQ77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ77_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 3.150e-85
Identity = 125/133 (93.98%), Postives = 129/133 (96.99%), Query Frame = 1 
Query:    1 LKADAVGAEALAKQGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVGYSMGVTNLKEFNDKMKVWAPEQMHRLGFRHRPEYIKDREAMRGMTYDEEWEYVDKLLEKEEPGFAGADSVEIPPANSEGGVVR 399
            +KADAVGAEALAKQGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVGYSMGVTNL+EFNDKMKVWAPEQMHRLGFRHRPEYI+DREAMRGMTYDEEWEYVD+LLEKEEPGFAGADS E PPA SEG VVR
Sbjct:   60 IKADAVGAEALAKQGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVGYSMGVTNLREFNDKMKVWAPEQMHRLGFRHRPEYIRDREAMRGMTYDEEWEYVDRLLEKEEPGFAGADSAECPPAKSEGEVVR 192
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15409.3791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ77_ECTSI3.150e-8593.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15409contigE-fasciculatus_F_contig15409:50..1321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007150.1
Exons3
Model size402
Cds size402
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15409.3791.1prot_E-fasciculatus_F_contig15409.3791.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15409 50..1321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928019.3595693-CDS-E-fasciculatus_F_contig15409:49..2201622928019.3595693-CDS-E-fasciculatus_F_contig15409:49..220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15409 50..220 +
1695995790.893092-CDS-E-fasciculatus_F_contig15409:49..2201695995790.893092-CDS-E-fasciculatus_F_contig15409:49..220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15409 50..220 +
1622928019.376146-CDS-E-fasciculatus_F_contig15409:462..5881622928019.376146-CDS-E-fasciculatus_F_contig15409:462..588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15409 463..588 +
1695995790.9009194-CDS-E-fasciculatus_F_contig15409:462..5881695995790.9009194-CDS-E-fasciculatus_F_contig15409:462..588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15409 463..588 +
1622928019.3887491-CDS-E-fasciculatus_F_contig15409:1216..13211622928019.3887491-CDS-E-fasciculatus_F_contig15409:1216..1321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15409 1217..1321 +
1695995790.9091823-CDS-E-fasciculatus_F_contig15409:1216..13211695995790.9091823-CDS-E-fasciculatus_F_contig15409:1216..1321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15409 1217..1321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15409.3791.1

>prot_E-fasciculatus_F_contig15409.3791.1 ID=prot_E-fasciculatus_F_contig15409.3791.1|Name=mRNA_E-fasciculatus_F_contig15409.3791.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
LKADAVGAEALAKQGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVG
YSMGVTNLKEFNDKMKVWAPEQMHRLGFRHRPEYIKDREAMRGMTYDEEW
EYVDKLLEKEEPGFAGADSVEIPPANSEGGVVR*
back to top

mRNA from alignment at E-fasciculatus_F_contig15409:50..1321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15409.3791.1 ID=mRNA_E-fasciculatus_F_contig15409.3791.1|Name=mRNA_E-fasciculatus_F_contig15409.3791.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15409:50..1321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAAAGGCCGATGCTGTCGGGGCTGAAGCCCTGGCCAAGCAAGGGCTCGA
GCCGCTGCCTTTCAGCCCGCACCGGCTGGCAACGCGGGCGCTCATGTACG
GGACGGCGCTTTCCGTGGGTTGTTTCTCGGCGGGCGTCTTGGTCGTAGGT
TACTCCATGGGAGTGACAAACGTGAGTGCCTCTCTCTTTGTGAAGCATCA
GACTTCGCGATAATTCTTTGTTCGTGGAACCCTCTCGCCCATCGACTTGC
CGCTTGTTGTTCTTCCCTGTCGGTGTTTGTTGGAATCTTGCTCCACCTGT
GACGGACGTCACTCAGAGAAGGTGTTACACCGCATGTTCCTCCTCCGCCC
CTCTCACGCCGCCGTGTTTGGGCCTCTGGCGGCACCCTACACCTGCTGCA
TCCCGACATGCAGCTGAAAGAGTTCAATGACAAGATGAAAGTCTGGGCAC
CGGAGCAGATGCACCGCCTGGGGTTCCGACATCGTCCAGAATACATCAAA
GACCGCGAGGCCATGCGGGGCATGACGTACGACGAGGAGGTGAGCGGGGG
GACTGTGCCGCCTGCGCTTGAGGTCGCCATGATGTCCTCTGTAACTCGGA
CATGTGTAGCTTTTCTTGTGAACTGCGTAGATTCCATACCCGACGTACGC
GTGGTCTGCTGGTACGTAGCATGACCTGTCAGTGTATAATATGCTTGCAG
CGAGCCTATATGATTTATCTGCAAGGGATGGGGAATCTGCGCTGTTTCGA
GGGAAGTTGGATGTCGCTGTTGGATGTGCACCTCGGTCCCGGGTGCTGCA
AACCGCCTATCGCCTGGGTACTGCTGTAGTGATGGTAGGAAGAGCCAGCC
CGTTTATCTCTGATTCTTCTGTAGTCAAACAAGCGACGTTCCCCTCAAAT
GCAGCGAGCGGCCGCCTCAATAAAACCCATCAAGAAGATTTCCGCGAAAA
ATCGCGACAAGGCTCCGTCTGCTGCAGGAGCATCGCGGAATCGAAAGAAA
ATACACACACCATGGACATAGTTTTGAAGCCATGATCGAGAGCGGGAGTA
GTGGACGCGCGTCCTGACACCTGTCCAATATTACAACGGGAACGATGCTC
TCCTCTTTGCTCGATTCTTATTGGTGCTGCCCTATTTCCAACCCTCGCTC
TCTTGTCGCTGCCAAAGTGGGAATACGTGGACAAGTTATTGGAGAAGGAA
GAACCCGGGTTTGCTGGCGCGGACAGCGTGGAGATCCCACCGGCGAACAG
CGAAGGCGGGGTTGTGCGGTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15409:50..1321+

>mRNA_E-fasciculatus_F_contig15409.3791.1 ID=mRNA_E-fasciculatus_F_contig15409.3791.1|Name=mRNA_E-fasciculatus_F_contig15409.3791.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15409:50..1321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAAAGGCCGATGCTGTCGGGGCTGAAGCCCTGGCCAAGCAAGGGCTCGA
GCCGCTGCCTTTCAGCCCGCACCGGCTGGCAACGCGGGCGCTCATGTACG
GGACGGCGCTTTCCGTGGGTTGTTTCTCGGCGGGCGTCTTGGTCGTAGGT
TACTCCATGGGAGTGACAAACCTAAAGGCCGATGCTGTCGGGGCTGAAGC
CCTGGCCAAGCAAGGGCTCGAGCCGCTGCCTTTCAGCCCGCACCGGCTGG
CAACGCGGGCGCTCATGTACGGGACGGCGCTTTCCGTGGGTTGTTTCTCG
GCGGGCGTCTTGGTCGTAGGTTACTCCATGGGAGTGACAAACCTGAAAGA
GTTCAATGACAAGATGAAAGTCTGGGCACCGGAGCAGATGCACCGCCTGG
GGTTCCGACATCGTCCAGAATACATCAAAGACCGCGAGGCCATGCGGGGC
ATGACGTACGACGAGGAGCTGAAAGAGTTCAATGACAAGATGAAAGTCTG
GGCACCGGAGCAGATGCACCGCCTGGGGTTCCGACATCGTCCAGAATACA
TCAAAGACCGCGAGGCCATGCGGGGCATGACGTACGACGAGGAGTGGGAA
TACGTGGACAAGTTATTGGAGAAGGAAGAACCCGGGTTTGCTGGCGCGGA
CAGCGTGGAGATCCCACCGGCGAACAGCGAAGGCGGGGTTGTGCGGTAGT
GGGAATACGTGGACAAGTTATTGGAGAAGGAAGAACCCGGGTTTGCTGGC
GCGGACAGCGTGGAGATCCCACCGGCGAACAGCGAAGGCGGGGTTGTGCG
GTAG
back to top