mRNA_E-fasciculatus_F_contig1539.3781.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1539.3781.1
Unique NamemRNA_E-fasciculatus_F_contig1539.3781.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1539.3781.1 vs. uniprot
Match: A0A6H5L7S8_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7S8_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 1.920e-88
Identity = 151/167 (90.42%), Postives = 153/167 (91.62%), Query Frame = 1 
Query:   28 MLLARRRLLPSIRGRLAAPCCKLWLPQRRDAEASHVAQASREIRAARHLPRERSCCISTGTAGALSHRQSECGSAFLGKARSAGGVRLLHGTSRAAAKAKLAHGARTETPAIPSFIEIRELASLLRVKPRALFKSMGGYQEKKKHKIVLSGVPYAFPNLGNVVVPFQ 528
            MLLARRRLLPS RGRLAAPCCKLWLP RRDAEASHVAQASREIRA RHLPR  S C STGTAGALSHRQ EC  AFLGKARS GG+RL HGTSRAAAKAKL  GARTETPAIPSFIEIRELASLLRVKPRALFKSMGGYQEKKKH+IVLSGVPYAFPNLGNVVVPFQ
Sbjct:    1 MLLARRRLLPSGRGRLAAPCCKLWLPDRRDAEASHVAQASREIRATRHLPRGHSFCTSTGTAGALSHRQLECECAFLGKARSVGGLRLFHGTSRAAAKAKLGRGARTETPAIPSFIEIRELASLLRVKPRALFKSMGGYQEKKKHRIVLSGVPYAFPNLGNVVVPFQ 167
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1539.3781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7S8_9PHAE1.920e-8890.42Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1539contigE-fasciculatus_F_contig1539:102..2624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.6
Seed ortholog evalue2.4e-76
Seed eggNOG ortholog2880.D7FIF9
KEGG koko:K02519
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1145@2759
Ec32 ortholog descriptionMTIF2L, mitochondrial translation initiation factor 2-like
Ec32 orthologEc-28_000120.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categorymitochondrion
Exons2
Model size528
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1539.3781.1prot_E-fasciculatus_F_contig1539.3781.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1539 102..2597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928015.5188572-CDS-E-fasciculatus_F_contig1539:101..2461622928015.5188572-CDS-E-fasciculatus_F_contig1539:101..246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1539 102..246 -
1695995789.7629945-CDS-E-fasciculatus_F_contig1539:101..2461695995789.7629945-CDS-E-fasciculatus_F_contig1539:101..246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1539 102..246 -
1622928015.5351949-CDS-E-fasciculatus_F_contig1539:2241..25971622928015.5351949-CDS-E-fasciculatus_F_contig1539:2241..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1539 2242..2597 -
1695995789.7751815-CDS-E-fasciculatus_F_contig1539:2241..25971695995789.7751815-CDS-E-fasciculatus_F_contig1539:2241..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1539 2242..2597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928015.55639-UTR-E-fasciculatus_F_contig1539:2597..26241622928015.55639-UTR-E-fasciculatus_F_contig1539:2597..2624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1539 2598..2624 -
1695995789.7844725-UTR-E-fasciculatus_F_contig1539:2597..26241695995789.7844725-UTR-E-fasciculatus_F_contig1539:2597..2624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1539 2598..2624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1539.3781.1

>prot_E-fasciculatus_F_contig1539.3781.1 ID=prot_E-fasciculatus_F_contig1539.3781.1|Name=mRNA_E-fasciculatus_F_contig1539.3781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=167bp
MLLARRRLLPSIRGRLAAPCCKLWLPQRRDAEASHVAQASREIRAARHLP
RERSCCISTGTAGALSHRQSECGSAFLGKARSAGGVRLLHGTSRAAAKAK
LAHGARTETPAIPSFIEIRELASLLRVKPRALFKSMGGYQEKKKHKIVLS
GVPYAFPNLGNVVVPFQ
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mRNA from alignment at E-fasciculatus_F_contig1539:102..2624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1539.3781.1 ID=mRNA_E-fasciculatus_F_contig1539.3781.1|Name=mRNA_E-fasciculatus_F_contig1539.3781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2523bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1539:102..2624- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAAACTGCTGCCTAACGCTCGCAGCATGTTGTTGGCTAGGCGGAGGCT
CCTACCGAGTATTCGTGGAAGATTGGCGGCCCCGTGTTGCAAGCTGTGGC
TGCCGCAACGCCGTGATGCCGAAGCGTCTCATGTTGCTCAAGCGTCGCGC
GAGATTCGTGCTGCCAGACACTTGCCTAGGGAGCGCAGCTGCTGCATATC
TACTGGCACTGCTGGTGCATTATCTCACCGGCAGTCAGAATGCGGGAGTG
CGTTCTTGGGCAAGGCACGGAGTGCGGGGGGTGTGAGGTTGTTGCATGGT
ACCAGCAGAGCTGCTGCGAAGGCGAAGCTAGCGCACGGAGCGAGAACGGA
GACGCCCGCTATCCCTTCGTTCATCGAGATAAGGTTAGTTTGGGGACGAG
GGTAGTCCATTTATCCTGTTTGTTGTGTACTCTCCATAGCACAAGTGTAG
TTGCCAGCAGACAGATTCTCCCCGCTCTCACACCAGGGCGTGCGTTTTCT
TGTGCGCCCACAACACAGGCAACAGCTCGAACTCGGGATCAGCCGAAAAC
GCAAAAATCATTTCTGGAAGCACTTGCGACCCTCAAAGTGCCTCCTTTTT
GGTATTCCCGACACGGGATAGTTGTACGGAGTGTCATTAAAATTGCGCAA
TGACCATGTGGAACACGGAGTCTTCGGTGGCAATTCAGGACGTGGAGGGG
AATGTGTGGAATCAATTCGAGCATATCGCGCCACAGGTGCTCTGCCTGCT
ACCGGTTGAAGCGATATATGTAGGCATTGCCACCATTAGGCTCTTGCATG
CGAAAATACGGCAGCGGATGCTCTTGTAGCGGTTTTATTCGAGAAGAAAG
AGTACCAAAGAAAACGGCAAGCTGCCGTTGACCGCAACTCAAGAATCAAC
CCTTTCCAGAGCACTCTCGAGGGTGCGGACTACACGACGAGCACCGCTTG
CTCCAACTGATACAAAGCCCATGCAGATGATGGGCTCCCTCGTCAACAGC
TTCCTTCACAACCTACATCACCCCTCTCTGTACACCACCTCTATCTCTTC
CTGCGAGCCGCACGCGTGCGCTGAAATTTTCCGTGTGCCACGTCCGAATC
ATGTTGCATGTGGCATGGTTGGCACACAACGGCATGGAACAGCAGTTCCG
TATCTCTTTTTTTGTCTAGAGGGTTAGTACACGCCCTCACATGGAAACAC
CTAGTTATGGGTGGTGATGGAGAACCACCAACCAAACCTCTGATTGGTCA
ATGGCGCCCGCGCGCGGCCGTTCTATCCTGCAGACCACACCTGTCGCCAA
GCGGGACGCCATTGTACGTCACCGTGACCCTCGTGACACCCTAATACTCG
AGGGTTGGGGTTAGGGTTAGGGTTGGTTAGATCTGGTTGGGTTGGGTCGC
GGGGTGTTGAGAATACCGTTTCTCTCTGCAGATTCAGATTCCATGAAGTG
GTGATGAACAGTTCACCAGCGGAAGTATTCTCTCTCTTGATGCTTGTATG
TGGCGAGGAAAAGCAGTGTGGCCGAGGTTACTCGGACGTGCTAGTTTCAA
GAAAGGTGGAAGTGAGCGAGAGAGGGCCCCGTGGGCATCTCTATATCTCC
GAGATTCGCTGAAATTGTCGTTACTGTATTCGGGCATCTTTCTTGGTAAA
CATCTTCGGAGCTGGAGAACATTGTTCATAGTCTCCAGATCGTTACTGGT
TGCATGTGCGTCCCTACCCCTAGGAAGGTACCTAATCCCGGTTTCCCAGC
GTGAATGATAGTTTGGGTGGTGATTGTTGGTCACGACCCGTGGGTTGTAA
ATTGCCGGTCCCTGCTCACACGCCAATCTCACGGTGTGCGGAGCCCCTTG
TGTTGGTGAGGGTACATTCGTCAATTACGCAACGTTATGTTCGTTGGGGG
TAGAAACGAACTCGTAGAGATGCCCACTGCTTATCTTCAGATGTACAAGT
ATCGGTGTTACATTTGAAACATCCTGGCTGCCGTGAAGATTGTTTGGTTG
CAAGGCAGTAGGTCCTGCTGGACAGCAATGACTCATGCTGGAAACGTCAT
CACTTGACGCAGCGCGCGACCGAGGATCTGAGCGACCGCGAGTGGCACTG
TAGTCTCTCCTCCAATATTCCGACGGCTGCATCTATTGAGAGAAAACAGC
GCAGGGCACAACATGCAACACGGCTTGACACCTTTACGTTTCGATGTCTG
GAGGCAAAATCAATTCCTTCTACTTAACACCACACTGTGCAGACGTAGGC
AAGCCAGCCATCCCACTACGGATGTTCAGACGAATCCTCAACATACAGCA
GCGTATTTCACGCTCGGGGAAATGCTGTAAATGCCCCCCGCTGACTCCCT
GCATTTTGTTCCGACCTCGTCTTACTAGGGAGTTGGCGAGCCTTCTGCGG
GTTAAACCAAGGGCGCTTTTCAAGTCAATGGGCGGCTACCAAGAGAAGAA
AAAACACAAGATCGTTCTCAGCGGAGTGCCCTACGCGTTTCCAAACCTTG
GGAACGTGGTCGTTCCGTTTCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1539:102..2624-

>mRNA_E-fasciculatus_F_contig1539.3781.1 ID=mRNA_E-fasciculatus_F_contig1539.3781.1|Name=mRNA_E-fasciculatus_F_contig1539.3781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1539:102..2624- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTTGGCTAGGCGGAGGCTCCTACCGAGTATTCGTGGAAGATTGGC
GGCCCCGTGTTGCAAGCTGTGGCTGCCGCAACGCCGTGATGCCGAAGCGT
CTCATGTTGCTCAAGCGTCGCGCGAGATTCGTGCTGCCAGACACTTGCCT
AGGGAGCGCAGCTGCTGCATATCTACTGGCACTGCTGGTGCATTATCTCA
CCGGCAGTCAGAATGCGGGAGTGCGTTCTTGGGCAAGGCACGGAGTGCGG
GGGGTGTGAGGTTGTTGCATGGTACCAGCAGAGCTGCTGCGAAGGCGAAG
CTAGCGCACGGAGCGAGAACGGAGACGCCCGCTATCCCTTCGTTCATCGA
GATAAGATGTTGTTGGCTAGGCGGAGGCTCCTACCGAGTATTCGTGGAAG
ATTGGCGGCCCCGTGTTGCAAGCTGTGGCTGCCGCAACGCCGTGATGCCG
AAGCGTCTCATGTTGCTCAAGCGTCGCGCGAGATTCGTGCTGCCAGACAC
TTGCCTAGGGAGCGCAGCTGCTGCATATCTACTGGCACTGCTGGTGCATT
ATCTCACCGGCAGTCAGAATGCGGGAGTGCGTTCTTGGGCAAGGCACGGA
GTGCGGGGGGTGTGAGGTTGTTGCATGGTACCAGCAGAGCTGCTGCGAAG
GCGAAGCTAGCGCACGGAGCGAGAACGGAGACGCCCGCTATCCCTTCGTT
CATCGAGATAAGGGAGTTGGCGAGCCTTCTGCGGGTTAAACCAAGGGCGC
TTTTCAAGTCAATGGGCGGCTACCAAGAGAAGAAAAAACACAAGATCGTT
CTCAGCGGAGTGCCCTACGCGTTTCCAAACCTTGGGAACGTGGTCGTTCC
GTTTCAGGGAGTTGGCGAGCCTTCTGCGGGTTAAACCAAGGGCGCTTTTC
AAGTCAATGGGCGGCTACCAAGAGAAGAAAAAACACAAGATCGTTCTCAG
CGGAGTGCCCTACGCGTTTCCAAACCTTGGGAACGTGGTCGTTCCGTTTC
AG
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