mRNA_E-fasciculatus_F_contig1538.3775.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1538.3775.1
Unique NamemRNA_E-fasciculatus_F_contig1538.3775.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.290e-54
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 2
Query:    2 KMTIAKKIGEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAPVLRRT 286
            KMTIAKKIGEYCIACELARLF DMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAPVLRRT
Sbjct:  243 KMTIAKKIGEYCIACELARLFHDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAPVLRRT 337          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A443SI43_9ACAR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SI43_9ACAR)

HSP 1 Score: 82.8 bits (203), Expect = 1.880e-16
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   29 EYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAP 271
            E C+ CE++RLFQ+ +S        G + P++P+RLL  VW+ +  LAGYEQQDAHEFLIA LD LH H        SN P
Sbjct:  252 EMCLVCEMSRLFQEFYS--------GKSTPHIPYRLLHLVWTHARHLAGYEQQDAHEFLIATLDVLHKHCKETNGASSNNP 324          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: UPI001E1D9753 (ubiquitin carboxyl-terminal hydrolase 22-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9753)

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-16
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   11 IAKKIGEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDES-NAP 271
            ++K+  E C+ CEL+R+FQ+ +S        G +  Y+P RLL  VW+++  LAGYEQQDAHEFLIA LD LH H    +   S N+P
Sbjct:  195 MSKEANEQCLVCELSRIFQEFYS--------GISSTYIPFRLLHLVWTSARHLAGYEQQDAHEFLIAALDLLHRHCIAGSNGRSSNSP 274          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A3S3RPC7_9ACAR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RPC7_9ACAR)

HSP 1 Score: 80.9 bits (198), Expect = 8.330e-16
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   29 EYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDESNAP 271
            E C+ CE++RLFQ+ +S        G + P++P++LL  VW+ +  LAGYEQQDAHEFLIA LD LH H        SN P
Sbjct:  170 EMCLVCEMSRLFQEFYS--------GKSTPHIPYKLLHLVWTHARHLAGYEQQDAHEFLIATLDVLHKHCKGTNGASSNNP 242          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A3S1AZY2_ELYCH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1AZY2_ELYCH)

HSP 1 Score: 80.9 bits (198), Expect = 8.900e-16
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   26 GEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
             + C+ CE+ARL+Q+ +S        G   PY+P+RLL  VW+ +  LAGYEQQDAHEFLIA LD LH H
Sbjct:  200 SQQCLVCEMARLYQEFYS--------GSRTPYIPYRLLHLVWTNARHLAGYEQQDAHEFLIAALDVLHRH 261          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: K1PH84_CRAGI (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Crassostrea TaxID=6564 RepID=K1PH84_CRAGI)

HSP 1 Score: 80.5 bits (197), Expect = 1.210e-15
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   26 GEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
             + C+ CE+ARLFQ+ +S        G+  P++P+RLL  VW+ +  LAGYEQQDAHEFLIA LD LH H
Sbjct:  202 AQQCLVCEMARLFQEFYS--------GNRTPHIPYRLLHLVWTNARHLAGYEQQDAHEFLIAALDVLHRH 263          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A060YVV1_ONCMY (USP domain-containing protein n=2 Tax=Salmonidae TaxID=8015 RepID=A0A060YVV1_ONCMY)

HSP 1 Score: 75.5 bits (184), Expect = 1.760e-15
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   35 CIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
            C+ CE+++LFQ+ +S        G   P++P RLL  VW+ +  LAGYEQQDAHEFLIA LD LH H
Sbjct:   32 CLVCEMSQLFQEFYS--------GHRSPHIPFRLLHLVWTHARHLAGYEQQDAHEFLIAALDVLHRH 90          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A4Y2KZA6_ARAVE (Ubiquitin carboxyl-terminal hydrolase 22-A n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KZA6_ARAVE)

HSP 1 Score: 79.3 bits (194), Expect = 2.130e-15
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   29 EYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDE 259
            E C+ACE+  +FQ+ +S        G ++P++P++L+  +W  +E+L G++QQDAHEFLIA+LD LH H      DE
Sbjct:   32 ESCLACEMFNIFQEFYS--------GQSDPHIPYKLVYLIWKHAEYLIGFDQQDAHEFLIAILDGLHAHCQNKETDE 100          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: A0A0B7A1L4_9EUPU (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A1L4_9EUPU)

HSP 1 Score: 79.7 bits (195), Expect = 2.260e-15
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   26 GEYCIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGH 235
             + C+ CE+ARL+Q+ +S        G   PY+P++LL  VW+ +  LAGYEQQDAHEFLIA LD LH H
Sbjct:  199 SQQCLVCEMARLYQEFYS--------GSRTPYIPYKLLHLVWTNARHLAGYEQQDAHEFLIAALDVLHRH 260          
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Match: UPI00193AC812 (ubiquitin carboxyl-terminal hydrolase 22-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193AC812)

HSP 1 Score: 79.7 bits (195), Expect = 2.270e-15
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   35 CIACELARLFQDMFSTEAAAATLGDTEPYVPHRLLEAVWSASEFLAGYEQQDAHEFLIAVLDSLHGHLDRAARDE-SNAPV 274
            C+ CE+ RLFQ+ ++ +  A        Y+P+RLL  VW+ +  LAGYEQQDAHEFLIA LD LH HL  +   + SN+P+
Sbjct:  231 CLVCEMMRLFQEFYAAKQTA--------YIPYRLLHLVWTNARHLAGYEQQDAHEFLIAALDLLHQHLSASNESKNSNSPM 303          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1538.3775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM1_ECTSI2.290e-5498.95Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A443SI43_9ACAR1.880e-1649.38Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lept... [more]
UPI001E1D97533.400e-1646.59ubiquitin carboxyl-terminal hydrolase 22-like n=1 ... [more]
A0A3S3RPC7_9ACAR8.330e-1648.15Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dino... [more]
A0A3S1AZY2_ELYCH8.900e-1652.86Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Elys... [more]
K1PH84_CRAGI1.210e-1552.86Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Cras... [more]
A0A060YVV1_ONCMY1.760e-1552.24USP domain-containing protein n=2 Tax=Salmonidae T... [more]
A0A4Y2KZA6_ARAVE2.130e-1542.86Ubiquitin carboxyl-terminal hydrolase 22-A n=1 Tax... [more]
A0A0B7A1L4_9EUPU2.260e-1551.43Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ario... [more]
UPI00193AC8122.270e-1548.15ubiquitin carboxyl-terminal hydrolase 22-like isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1538contigE-fasciculatus_F_contig1538:2..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1538.3775.1prot_E-fasciculatus_F_contig1538.3775.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1538 36..582 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.594082-UTR-E-fasciculatus_F_contig1538:1..351622928014.594082-UTR-E-fasciculatus_F_contig1538:1..35Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1538 2..35 -
1695995789.4211552-UTR-E-fasciculatus_F_contig1538:1..351695995789.4211552-UTR-E-fasciculatus_F_contig1538:1..35Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1538 2..35 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.6048708-CDS-E-fasciculatus_F_contig1538:35..2011622928014.6048708-CDS-E-fasciculatus_F_contig1538:35..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 36..201 -
1695995789.4299707-CDS-E-fasciculatus_F_contig1538:35..2011695995789.4299707-CDS-E-fasciculatus_F_contig1538:35..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 36..201 -
1622928014.6167417-CDS-E-fasciculatus_F_contig1538:496..5821622928014.6167417-CDS-E-fasciculatus_F_contig1538:496..582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 497..582 -
1695995789.4414759-CDS-E-fasciculatus_F_contig1538:496..5821695995789.4414759-CDS-E-fasciculatus_F_contig1538:496..582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 497..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1538.3775.1

>prot_E-fasciculatus_F_contig1538.3775.1 ID=prot_E-fasciculatus_F_contig1538.3775.1|Name=mRNA_E-fasciculatus_F_contig1538.3775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp
EDDDCQEDRGVLHRVRACAAVPGHVLDRSRRRYARRHGALRAPPAPRGRV
ERVGVSSRVRAAGRARVLDRRAGQPPRTPGPRR*
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mRNA from alignment at E-fasciculatus_F_contig1538:2..582-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1538.3775.1 ID=mRNA_E-fasciculatus_F_contig1538.3775.1|Name=mRNA_E-fasciculatus_F_contig1538.3775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:2..582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGATGACGATTGCCAAGAAGATCGGGGAGTACTGCATCGCGTGCGAGC TTGCGCGGCTGTTCCAGGACATGTTCTCGACAGAAGGTGAACCAAGGGCA CTTGGCCGCGATCAACGGTGTTGGTTGTGTCTCCACTCGCGAAGTAGTAC GTCGCCTAACTCATTTCCCTGGGTTCGCTGTCCCACGCACAAAGCTTGTT ACTGTTGGCTGCTTCTGGATCTCTTTTTGTAGACACCTTCTCACCATCTG CCACTTCCCCCCGCTCACACCACCTCGTCAACTCCCATTCTGGCTGCTGG CGGACATTTTTTTTTAGACACCCTCTCAACATCTACTCCCCCTCCCCCCT CCGCTCAACTCCCGTTTTTTTGCTCTCGCAGCCGCCGCCGCTACGCTCGG AGACACGGAGCCTTACGTGCCCCACCGGCTCCTCGAGGCCGTGTGGAGCG CGTCGGAGTTTCTAGCCGGGTACGAGCAGCAGGACGCGCACGAGTTCTTG ATCGCCGTGCTGGACAGCCTCCACGGACACCTGGACCGCGCCGCTAGGGA CGAGTCTAACGCGCCGGTGCTTCGGCGCACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1538:2..582-

>mRNA_E-fasciculatus_F_contig1538.3775.1 ID=mRNA_E-fasciculatus_F_contig1538.3775.1|Name=mRNA_E-fasciculatus_F_contig1538.3775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:2..582- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGATGACGATTGCCAAGAAGATCGGGGAGTACTGCATCGCGTGCGAGC
TTGCGCGGCTGTTCCAGGACATGTTCTCGACAGAAGGAAGATGACGATTG
CCAAGAAGATCGGGGAGTACTGCATCGCGTGCGAGCTTGCGCGGCTGTTC
CAGGACATGTTCTCGACAGAAGCCGCCGCCGCTACGCTCGGAGACACGGA
GCCTTACGTGCCCCACCGGCTCCTCGAGGCCGTGTGGAGCGCGTCGGAGT
TTCTAGCCGGGTACGAGCAGCAGGACGCGCACGAGTTCTTGATCGCCGTG
CTGGACAGCCTCCACGGACACCTGGACCGCGCCGCTAGCCGCCGCCGCTA
CGCTCGGAGACACGGAGCCTTACGTGCCCCACCGGCTCCTCGAGGCCGTG
TGGAGCGCGTCGGAGTTTCTAGCCGGGTACGAGCAGCAGGACGCGCACGA
GTTCTTGATCGCCGTGCTGGACAGCCTCCACGGACACCTGGACCGCGCCG
CTAG
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