mRNA_E-fasciculatus_F_contig15368.3769.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15368.3769.1
Unique NamemRNA_E-fasciculatus_F_contig15368.3769.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 8.110e-136
Identity = 203/220 (92.27%), Postives = 212/220 (96.36%), Query Frame = 1
Query:    1 ATPQSKEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSHKNSGGTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFVNPSNGKLVGTQVS 660
            ATPQSKEESD KGRERA KVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWV++ LTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKA+ELADLLLPAFDTNTGIPTARVSFRSHKNSGG+KSVLAEIGTLQVEFRYLSKITGI KYADK N+VFDHM+ LPS DGLYPIFVNPSNG+ VG+QV+
Sbjct:  423 ATPQSKEESDRKGRERAAKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVKDKLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAIELADLLLPAFDTNTGIPTARVSFRSHKNSGGSKSVLAEIGTLQVEFRYLSKITGIPKYADKVNKVFDHMYGLPSKDGLYPIFVNPSNGQTVGSQVT 642          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: D7FS40_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS40_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.820e-77
Identity = 127/215 (59.07%), Postives = 155/215 (72.09%), Query Frame = 1
Query:   16 KEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSHKNSGGTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFVNPSNGKLVGTQVS 660
            +EESD  GRERA  ++ AM   WKGY +HAWG DE+ P +KKG   WGGMGVTLVDSLDTLWLMG+ EEFY  RDWV +HLTF+    VSVFETTIR LGGLLSA++LS+DE+F  +A +LAD L+PAF T+TGIP   V+  + K  GG+ SVL+E+GTLQ+EFRYLS   G  KYA  A R FD +       GLYPI +NP+ GK   +QV+
Sbjct:  291 REESDRLGRERAAVIRAAMDLLWKGYSEHAWGYDEVKPLSKKGSDNWGGMGVTLVDSLDTLWLMGLTEEFYNGRDWVRDHLTFNEVGMVSVFETTIRVLGGLLSAFELSRDEVFLERAKDLADRLMPAFGTSTGIPYKLVNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGRTVPHGLYPIRINPNTGKFTSSQVT 505          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A6U4HU98_9STRA (alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HU98_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.120e-71
Identity = 128/206 (62.14%), Postives = 152/206 (73.79%), Query Frame = 1
Query:   43 ERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSHKNS----GGTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFVNPSNGKLVG 648
            +RA KVKEAMQHAWKGY+ +AWG DEL P + + +  WGGMGVTLVDSLDTLWLM MK+EFY ARDWV+N L+F  A  VSVFETTIRELGGLLSAYDLS D +F  KA  L D LL AFDT +GIP  R+S  +   S    G ++SVLAEIGTLQVEFRYLS  TG S+YA+KAN+VF+ +     N GLY I+V+  +  + G
Sbjct:  602 QRAEKVKEAMQHAWKGYKSNAWGYDELLPVSGRKQNNWGGMGVTLVDSLDTLWLMDMKDEFYEARDWVKNSLSFDRAGTVSVFETTIRELGGLLSAYDLSGDAVFLDKARVLGDRLLKAFDTPSGIPAGRISLNAGPTSANLRGSSRSVLAEIGTLQVEFRYLSHATGNSRYAEKANKVFEALEGKDRN-GLYGIYVDTRSASVSG 806          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A7S1GA01_9STRA (alpha-1,2-Mannosidase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GA01_9STRA)

HSP 1 Score: 231 bits (589), Expect = 7.430e-70
Identity = 115/222 (51.80%), Postives = 153/222 (68.92%), Query Frame = 1
Query:    7 PQSKEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSHKNSG----GTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFVNPSNGKLVGTQVS 660
            P+   ESD  GRERA  VK AMQHAWKGY+  AWGADEL PR+ + +  WGGMG+TL+DSLDTLWLMGMK+EF  A +WV+ HL F+    VSVFET IR LGGLL+AYD+S +++F  KA ++   L+PAF+T +GIP   V   S   S     G+ S+L+E+GT+QVEFRYLS  +G + +  KA +V + ++     DGLYPI++NP +G    + V+
Sbjct:   67 PEVMAESDRLGRERAAAVKAAMQHAWKGYKDRAWGADELKPRSGRSQNNWGGMGMTLIDSLDTLWLMGMKDEFREATEWVKAHLNFAQPRSVSVFETNIRALGGLLAAYDVSGEKVFLDKAKDIGSRLMPAFNTPSGIPMNSVHLTSGTASNPSWTGSSSILSELGTMQVEFRYLSHASGDASFGRKAEQVIETLNKHAPADGLYPIYINPRSGTPANSHVT 288          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A7S3XK61_HETAK (alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK61_HETAK)

HSP 1 Score: 230 bits (587), Expect = 1.070e-68
Identity = 109/216 (50.46%), Postives = 158/216 (73.15%), Query Frame = 1
Query:   25 SDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSHKNSG----GTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFVNPSNGKLVGTQVS 660
            SD  GR+RA  ++   +HAW GY+ HAWGADE+ P++ +  + WGGM VT+VD+LDT+WLMG+K+EF+ ARD++++HL+F    +VSVFETTIR LGGLLSAYDLS D++F TKA +L   L  AF+TN+GIP + V  ++   S     G  ++L+E+GTLQVEFRYLSK TG  +Y  KA +VF+ + + P+ +GL PI+V+ ++G   G++++
Sbjct:  163 SDALGRKRADAIRAGFKHAWDGYKAHAWGADEVKPQSGRRNENWGGMAVTMVDALDTIWLMGLKDEFWEARDYIKSHLSFGKTGQVSVFETTIRSLGGLLSAYDLSGDKVFLTKAEDLGGRLAKAFNTNSGIPYSTVHLQNGHGSTPGWTGGNAILSELGTLQVEFRYLSKATGNMEYGRKATKVFEQLRNKPTTNGLVPIYVSINSGNFQGSKIT 378          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A7S2UB93_9STRA (alpha-1,2-Mannosidase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB93_9STRA)

HSP 1 Score: 230 bits (586), Expect = 7.140e-68
Identity = 119/219 (54.34%), Postives = 155/219 (70.78%), Query Frame = 1
Query:    4 TPQSKEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSF---RSHKNSG--GTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPS-NDGLYPIFVNPSNGKL 642
            T + +++SD   R R V VK AM+HAWKGY+ HA+G DE+ P + +G   WGGMG TLVDSLDTLWLMG+KEEF+  RDWV +HL   H + VSVFETTIR LGGLLSAYD S D++F  KA +L   L+ AFD+ +GIP  +VS     SH N G  G  ++L+E GTLQVEFRYL++ TGI++YA K+ RVF+ M  L S N+GL+P ++   N ++
Sbjct:  234 TDEIRKQSDDLARTRRVHVKNAMKHAWKGYKAHAFGQDEVLPISGRGHNNWGGMGTTLVDSLDTLWLMGLKEEFWEGRDWVRDHLEHDHVNSVSVFETTIRSLGGLLSAYDWSGDKVFLEKAQDLGKRLVRAFDSPSGIPYGQVSLSHPESHNNLGWAGGNAILSEAGTLQVEFRYLARATGITEYATKSERVFEVMEPLQSKNNGLFPYYIKNKNKEV 452          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A6H5L0M9_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M9_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 2.160e-67
Identity = 118/215 (54.88%), Postives = 143/215 (66.51%), Query Frame = 1
Query:   16 KEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSHKNSGGTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFVNPSNGKLVGTQVS 660
            +EESD  GRERA  ++ AM   WKGY +HAWG DE+ P +KKG   WGGMGVTLVDSLDTLWLMG+ EEFY  RDWV +HLTF+    VSVFETTIR LGGLLSA++LS+DE+F  +A +LAD LLPAF T+TGIP   V+  + K  GG+ SVL+E+GTLQ                  A R FD +       GLYPI +NP+ GK   +Q S
Sbjct:  293 REESDRLGRERAAVIRAAMDLLWKGYSEHAWGYDEVKPLSKKGNDNWGGMGVTLVDSLDTLWLMGLTEEFYNGRDWVRDHLTFNEVGMVSVFETTIRVLGGLLSAFELSRDEVFLERAKDLADRLLPAFGTSTGIPYKLVNLSNGKTGGGSYSVLSELGTLQ------------------AMRAFDFLAGRTVPHGLYPIRINPNTGKFTSSQAS 489          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A7S4VT43_9STRA (alpha-1,2-Mannosidase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VT43_9STRA)

HSP 1 Score: 217 bits (552), Expect = 4.760e-66
Identity = 109/205 (53.17%), Postives = 146/205 (71.22%), Query Frame = 1
Query:   22 ESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSHKNS-----GGTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFV 621
            +SD   R R V V+ AM+HAW GY+ HA+G DEL P++K  +  W GMGVTL+DSLDTLW+M +K EF+  RDWV+ HL+      VS FETTIR LGGLLSAYD+S DEIF  +A +L   LL AFD+ +GIP  +V+ +S + S     GG  ++LAE G+LQ+EFRYL++ TG ++YA+KA RVF+ M ++  + GLYP+FV
Sbjct:   49 QSDEVARSRLVHVENAMKHAWNGYKTHAFGHDELLPQSKHYQNNWDGMGVTLIDSLDTLWMMDLKNEFWECRDWVKEHLSHDIDKFVSTFETTIRSLGGLLSAYDMSGDEIFLERADDLGSRLLKAFDSPSGIPYGQVNLKSGEASNLPWIGGEVAILAEFGSLQIEFRYLAQATGKTEYAEKAERVFELMKEIELSHGLYPVFV 253          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A7S2EYT1_TRICV (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYT1_TRICV)

HSP 1 Score: 222 bits (566), Expect = 3.000e-65
Identity = 113/216 (52.31%), Postives = 143/216 (66.20%), Query Frame = 1
Query:    4 TPQSKEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFR----SHKNSGGTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFVNPSNGK 639
            TP+   +SD   R R   VK AM+HAW GY+++A+G DEL P+ K+    WGGMG TLVDSLDTLWLMGMK+EFY ARDWV +HL  +H   VSVFETTIR LGGLLSAYD S D  F  KA +L   L+ AFD+ +G+P   +       S+    G  ++L+EIGTLQVEFRYL+K TG   YA K+ R F+ +  +  +DGLYP++V     K
Sbjct:  268 TPELMSQSDELARGRREYVKAAMRHAWAGYKKYAFGMDELLPQTKRSHNNWGGMGTTLVDSLDTLWLMGMKDEFYEARDWVRDHLDHTHVGGVSVFETTIRSLGGLLSAYDWSGDSAFLEKADDLGSRLVKAFDSPSGVPYGHIELNRGTASNFGWAGGNAILSEIGTLQVEFRYLAKATGKRHYATKSERAFEQLKSIEPDDGLYPLYVKNGGPK 483          
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Match: A0A7S2KLB8_9STRA (alpha-1,2-Mannosidase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLB8_9STRA)

HSP 1 Score: 218 bits (554), Expect = 6.810e-65
Identity = 112/211 (53.08%), Postives = 146/211 (69.19%), Query Frame = 1
Query:    1 ATPQSKEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQPWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSF-RSHKNSG---GTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSNDGLYPIFV 621
            AT   K  +D   RER   +++AM+H W GY ++AWG DEL P  K+G+  +GGMG TLVDSLDTLWLMGM +EF+ ARDWV + L     +++SVFETTIR LGGLL+AYD S DE+F  KA +L   L+ AFD+ +GIP    +  R+H  +    G  S+LAE+GTLQ+EFR+L+K TG   YADKAN+VF+ M  +  + GLYPIFV
Sbjct:    6 ATKVEKLNNDTLARERREIIRDAMKHTWSGYRKYAWGKDELKPVKKEGRNNYGGMGTTLVDSLDTLWLMGMYDEFWEARDWVRDELDHDAVADISVFETTIRSLGGLLAAYDWSGDEVFLEKADDLGSRLVRAFDSPSGIPYGNTALNRNHSYNTAWTGESSILAELGTLQLEFRHLAKATGKQHYADKANKVFEVMKTIEPDHGLYPIFV 216          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15368.3769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK4_ECTSI8.110e-13692.27alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
D7FS40_ECTSI1.820e-7759.07alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculos... [more]
A0A6U4HU98_9STRA2.120e-7162.14alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva Tax... [more]
A0A7S1GA01_9STRA7.430e-7051.80alpha-1,2-Mannosidase n=1 Tax=Bicosoecida sp. CB-2... [more]
A0A7S3XK61_HETAK1.070e-6850.46alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo... [more]
A0A7S2UB93_9STRA7.140e-6854.34alpha-1,2-Mannosidase n=1 Tax=Attheya septentriona... [more]
A0A6H5L0M9_9PHAE2.160e-6754.88alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A7S4VT43_9STRA4.760e-6653.17alpha-1,2-Mannosidase n=1 Tax=Ditylum brightwellii... [more]
A0A7S2EYT1_TRICV3.000e-6552.31alpha-1,2-Mannosidase (Fragment) n=1 Tax=Trieres c... [more]
A0A7S2KLB8_9STRA6.810e-6553.08alpha-1,2-Mannosidase n=1 Tax=Leptocylindrus danic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15368contigE-fasciculatus_F_contig15368:225..2583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.9
Seed ortholog evalue9.3e-113
Seed eggNOG ortholog2880.D8LGK4
Preferred nameMAN1A2
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size660
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15368.3769.1prot_E-fasciculatus_F_contig15368.3769.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15368 225..2583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928013.7355928-CDS-E-fasciculatus_F_contig15368:224..3831622928013.7355928-CDS-E-fasciculatus_F_contig15368:224..383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 225..383 -
1695995789.035449-CDS-E-fasciculatus_F_contig15368:224..3831695995789.035449-CDS-E-fasciculatus_F_contig15368:224..383Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 225..383 -
1622928013.7475765-CDS-E-fasciculatus_F_contig15368:825..9601622928013.7475765-CDS-E-fasciculatus_F_contig15368:825..960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 826..960 -
1695995789.048683-CDS-E-fasciculatus_F_contig15368:825..9601695995789.048683-CDS-E-fasciculatus_F_contig15368:825..960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 826..960 -
1622928013.761816-CDS-E-fasciculatus_F_contig15368:1760..19361622928013.761816-CDS-E-fasciculatus_F_contig15368:1760..1936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 1761..1936 -
1695995789.0591395-CDS-E-fasciculatus_F_contig15368:1760..19361695995789.0591395-CDS-E-fasciculatus_F_contig15368:1760..1936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 1761..1936 -
1622928013.7739682-CDS-E-fasciculatus_F_contig15368:2393..25831622928013.7739682-CDS-E-fasciculatus_F_contig15368:2393..2583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 2394..2583 -
1695995789.0685127-CDS-E-fasciculatus_F_contig15368:2393..25831695995789.0685127-CDS-E-fasciculatus_F_contig15368:2393..2583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15368 2394..2583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15368.3769.1

>prot_E-fasciculatus_F_contig15368.3769.1 ID=prot_E-fasciculatus_F_contig15368.3769.1|Name=mRNA_E-fasciculatus_F_contig15368.3769.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
ATPQSKEESDLKGRERAVKVKEAMQHAWKGYEQHAWGADELAPRAKKGKQ
PWGGMGVTLVDSLDTLWLMGMKEEFYRARDWVENHLTFSHASEVSVFETT
IRELGGLLSAYDLSKDEIFKTKAVELADLLLPAFDTNTGIPTARVSFRSH
KNSGGTKSVLAEIGTLQVEFRYLSKITGISKYADKANRVFDHMHDLPSND
GLYPIFVNPSNGKLVGTQVS
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mRNA from alignment at E-fasciculatus_F_contig15368:225..2583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15368.3769.1 ID=mRNA_E-fasciculatus_F_contig15368.3769.1|Name=mRNA_E-fasciculatus_F_contig15368.3769.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2359bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15368:225..2583- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGACACCGCAATCGAAGGAAGAGAGCGACCTGAAGGGGCGAGAGAGGGC GGTCAAGGTGAAGGAGGCCATGCAGCACGCCTGGAAGGGCTACGAGCAGC ACGCCTGGGGCGCGGACGAGCTTGCCCCGAGGGCGAAGAAGGGGAAGCAG CCGTGGGGGGGCATGGGGGTGACGCTGGTTGACTCTTTGGGTGCGTACCG TACCGTACGTGCATGTTGCGAGAAGCCAGAGCCCCCCACTTTTTTTCTTG CCCTCTGTCGTTGTACTTGTAGCGTGTGAAGGGGGCGTTAGCTCCTTCGG GAGTGAACGATCGGCCGAGCGTGGGTGTGTTTTTATGTTGTTGTTTTCTT CTGCCCGTGCGTTCGGCGAAAGATGCACTCGGAGGCTCCCTCCCTGGGGA GCGAGCCGCCGAGCCGATTTATGCACGGGGCCCCTGCTTGCTGTGTAATG CACGTGCGTCGATTTTGTGGTCTGTTTCTCTTTGTTTTTTGTCTACAACA AGATCGGCAGGTGCCGGTCAGAGTGACGTCATTGATGGGCGTGAGAAAAA GTTCATAAGAAATACTCTTCCTCTGAAGAACGTTTAACTAACGTCTCTCG TGTGTGTGTGTTTGTTGTTCTCCTTCTTTCTGAAAAAAACAAATCAGACA CGCTCTGGTTGATGGGCATGAAGGAAGAGTTCTACAGGGCGCGGGACTGG GTGGAGAACCACCTGACCTTCTCGCACGCATCCGAGGTAAGCGTGTTCGA GACCACGATTCGGGAGCTGGGCGGGCTGCTCTCGGCGTACGACCTCTCGA AGGACGAGATCTTCAAGACCAAGGTGGGTGGGTGTGACGGTGTTTTTTTT CATGTATCCGTACATGTAGCAGAATCACATCCATAATTTGATTGCCAAAA ACAAACAGGTCGATTTGACATCACCCCGTATTCATCGTTAATGGCTTGCA TTTCTGCGGGATAGTACTTGAAAGTCGAACAAGTGGATATGTTGAAGCCA TGTCAGGTTTGTGTGTTTCAGGACATCGTTGCTGTGGGGGCAACGCGCTA TGCGTATGTGCACAAACGCGGTAGTGCTTCTCCTGTTATAGCTGTTGCTG TTTTGCTCAAGAATACACCTTGCGTCGAAGGTGCACACTGAAGCCCGCAC TGGTCTCCCTTGAGACATGGCAAGGACGGCACATGTGGAACATGATCCAT GGATGATGTCATCGCTCCAAATGCCATATTATAGTCAAGCCAGGGGGAGT CACTGGTAACACGGCCTACTGTCGCTGTCGCTGTTGTTGTTCGTTGTCTC GTCTTCACATGATTGATCGGAAGCTGGTCCGATGTGTTCGGTACCTTCTG TAATATCCATACCGGTCTCACGAACGTGAACTTACTTCCATTTTCACAAG CCCGACCCCCTGGCTAAACATGGTAGACCCACCCACTGGCGTGTCTTGAT GTATTTTTTTTATTGTTTTGCGTCTCGAATACGAAGCTTCTTTTAATCGC CGCGCTTATTGGTGAGTCCCGTGTGCACCCTCGCCCTCATGGTGTATGTT TTCCCCTGTCCCCTGTCCCCCGTCCCCGCACCACCCAAACGGAATCGAAT GGTAACGTGGAACACCTCACCAGGCGGTTGAGCTCGCAGACCTGCTGCTA CCGGCGTTCGACACCAACACGGGCATCCCGACAGCTCGGGTCAGCTTCCG AAGTCACAAGAACTCCGGCGGCACCAAGTCGGTGCTAGCGGAAATCGGTA CACTGCAGGTGAATGAACAATGGACGCTCAAAGCAGTTGCTTTTTTTTTT CTTTGAGAGAAGCTAATATAGAAGTATTTTTGGTGTTGTCCCGGTCGCTA CTCAGTACCCGTGCGCGTCACTTCACTGTCCCCCCCTCCCCCCCATTTTT GTGAGAACATGTGTAACAACAACCCGAGCTCTTGCGAGATGATGACCTCA TTTGGTGCTTTGACTTGTCCTCCAGGCAATTTTTTTTTTTGTCAGCAAAT GCTGCTTATTTTTTCTCTGGTTTATGACGCCACATGCCTCTGATGTTGTC GGCAAGTGTCAAGCCACACAAAGACTAAACGCAAATCAGGTTCCGAATTC ATGTACGCGTGTATCCCACTGTTTTTTCTTTAGTCCTGTTGTTTATGATG GTCTTGGTGCTGCTTGCGCGCTGATCGCACCGCACCCCCACCCCATGCAG GTCGAGTTCCGGTACCTCAGCAAGATCACGGGCATCTCCAAGTACGCGGA CAAGGCGAACAGGGTCTTCGACCACATGCACGACCTCCCGTCCAACGACG GTCTTTACCCCATCTTCGTCAACCCGTCCAACGGAAAATTAGTCGGCACA CAGGTAAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15368:225..2583-

>mRNA_E-fasciculatus_F_contig15368.3769.1 ID=mRNA_E-fasciculatus_F_contig15368.3769.1|Name=mRNA_E-fasciculatus_F_contig15368.3769.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15368:225..2583- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGACACCGCAATCGAAGGAAGAGAGCGACCTGAAGGGGCGAGAGAGGGC
GGTCAAGGTGAAGGAGGCCATGCAGCACGCCTGGAAGGGCTACGAGCAGC
ACGCCTGGGGCGCGGACGAGCTTGCCCCGAGGGCGAAGAAGGGGAAGCAG
CCGTGGGGGGGCATGGGGGTGACGCTGGTTGACTCTTTGGGCGACACCGC
AATCGAAGGAAGAGAGCGACCTGAAGGGGCGAGAGAGGGCGGTCAAGGTG
AAGGAGGCCATGCAGCACGCCTGGAAGGGCTACGAGCAGCACGCCTGGGG
CGCGGACGAGCTTGCCCCGAGGGCGAAGAAGGGGAAGCAGCCGTGGGGGG
GCATGGGGGTGACGCTGGTTGACTCTTTGGACACGCTCTGGTTGATGGGC
ATGAAGGAAGAGTTCTACAGGGCGCGGGACTGGGTGGAGAACCACCTGAC
CTTCTCGCACGCATCCGAGGTAAGCGTGTTCGAGACCACGATTCGGGAGC
TGGGCGGGCTGCTCTCGGCGTACGACCTCTCGAAGGACGAGATCTTCAAG
ACCAAGACACGCTCTGGTTGATGGGCATGAAGGAAGAGTTCTACAGGGCG
CGGGACTGGGTGGAGAACCACCTGACCTTCTCGCACGCATCCGAGGTAAG
CGTGTTCGAGACCACGATTCGGGAGCTGGGCGGGCTGCTCTCGGCGTACG
ACCTCTCGAAGGACGAGATCTTCAAGACCAAGGCGGTTGAGCTCGCAGAC
CTGCTGCTACCGGCGTTCGACACCAACACGGGCATCCCGACAGCTCGGGT
CAGCTTCCGAAGTCACAAGAACTCCGGCGGCACCAAGTCGGTGCTAGCGG
AAATCGGTACACTGCAGGCGGTTGAGCTCGCAGACCTGCTGCTACCGGCG
TTCGACACCAACACGGGCATCCCGACAGCTCGGGTCAGCTTCCGAAGTCA
CAAGAACTCCGGCGGCACCAAGTCGGTGCTAGCGGAAATCGGTACACTGC
AGGTCGAGTTCCGGTACCTCAGCAAGATCACGGGCATCTCCAAGTACGCG
GACAAGGCGAACAGGGTCTTCGACCACATGCACGACCTCCCGTCCAACGA
CGGTCTTTACCCCATCTTCGTCAACCCGTCCAACGGAAAATTAGTCGGCA
CACAGGTAAGTGTCGAGTTCCGGTACCTCAGCAAGATCACGGGCATCTCC
AAGTACGCGGACAAGGCGAACAGGGTCTTCGACCACATGCACGACCTCCC
GTCCAACGACGGTCTTTACCCCATCTTCGTCAACCCGTCCAACGGAAAAT
TAGTCGGCACACAGGTAAGT
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