mRNA_E-fasciculatus_F_contig15345.3757.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15345.3757.1
Unique NamemRNA_E-fasciculatus_F_contig15345.3757.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: D7FHV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV1_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.300e-36
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDAGG 186
            YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQD+GG
Sbjct:    3 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGG 64
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: A0A6H5L1Z3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z3_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.390e-34
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDAGG 186
            YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQD+GG
Sbjct:   51 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGG 112
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: A0A7S3A5R9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5R9_9RHOD)

HSP 1 Score: 114 bits (284), Expect = 3.410e-31
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDA 180
            YEWLDPSIKKTEW REEEEKLLH+AK+MP QWRTIAPIVGRTAAQCL+HYE+LLD AQ A
Sbjct:   50 YEWLDPSIKKTEWTREEEEKLLHLAKIMPTQWRTIAPIVGRTAAQCLEHYEKLLDQAQKA 109
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: A9XXV2_9MYRI (CDC5-related protein (Fragment) n=22 Tax=Panarthropoda TaxID=88770 RepID=A9XXV2_9MYRI)

HSP 1 Score: 111 bits (278), Expect = 1.610e-30
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQ 174
            YEWLDPSIKKTEW REEEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD AQ
Sbjct:   20 YEWLDPSIKKTEWTREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEYLLDQAQ 77
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: D0URR4_PHRMA (CDC5-related protein (Fragment) n=4 Tax=Arachnida TaxID=6854 RepID=D0URR4_PHRMA)

HSP 1 Score: 111 bits (278), Expect = 1.610e-30
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQ 174
            YEWLDPSIKKTEW REEEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD AQ
Sbjct:   20 YEWLDPSIKKTEWTREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEYLLDQAQ 77
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: D0URN7_9CHEL (CDC5-related protein (Fragment) n=33 Tax=Arthropoda TaxID=6656 RepID=D0URN7_9CHEL)

HSP 1 Score: 110 bits (274), Expect = 6.530e-30
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQ 174
            +EWLDPSIKKTEW+R+EEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD AQ
Sbjct:   20 FEWLDPSIKKTEWSRDEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEHLLDQAQ 77
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: R1BP94_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BP94_EMIHU)

HSP 1 Score: 112 bits (279), Expect = 1.030e-29
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDAG 183
            +EWLDPSIKKTEW+REEEEKLLH+AKLMP QWRTIAPIVGRTAAQCL+HYERLLD A   G
Sbjct:   50 HEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIVGRTAAQCLEHYERLLDQAPRRG 110
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: A0A7S0G5Y5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5Y5_9RHOD)

HSP 1 Score: 114 bits (284), Expect = 1.480e-29
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDA 180
            YEWLDPSIKKTEW REEEEKLLH+AK+MP QWRTIAPIVGRTAAQCL+HYE+LLD AQ A
Sbjct:   50 YEWLDPSIKKTEWTREEEEKLLHLAKIMPTQWRTIAPIVGRTAAQCLEHYEKLLDQAQKA 109
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BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: UPI001F085350 (cell division cycle 5-like protein n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F085350)

HSP 1 Score: 109 bits (272), Expect = 1.970e-29
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMA 171
            YEWLDPSIKKTEW+REEEEKLLH+AKLMP QWRTIAPI+GRTAAQCL+HYE LLD A
Sbjct:   51 YEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKA 107
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Match: D0URN1_9CRUS (CDC5-related protein (Fragment) n=2 Tax=Daphnia magna TaxID=35525 RepID=D0URN1_9CRUS)

HSP 1 Score: 108 bits (269), Expect = 3.770e-29
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQ 174
            YEWLDPSIKKTEW+REE+EKLLH+AKLMP QWRTIAPIVGRTAAQCL+ YE LLD AQ
Sbjct:   20 YEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIVGRTAAQCLERYEYLLDQAQ 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15345.3757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHV1_ECTSI1.300e-3698.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1Z3_9PHAE6.390e-3498.39MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3A5R9_9RHOD3.410e-3186.67Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A9XXV2_9MYRI1.610e-3087.93CDC5-related protein (Fragment) n=22 Tax=Panarthro... [more]
D0URR4_PHRMA1.610e-3087.93CDC5-related protein (Fragment) n=4 Tax=Arachnida ... [more]
D0URN7_9CHEL6.530e-3084.48CDC5-related protein (Fragment) n=33 Tax=Arthropod... [more]
R1BP94_EMIHU1.030e-2985.25Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S0G5Y5_9RHOD1.480e-2986.67Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
UPI001F0853501.970e-2987.72cell division cycle 5-like protein n=1 Tax=Hypomes... [more]
D0URN1_9CRUS3.770e-2986.21CDC5-related protein (Fragment) n=2 Tax=Daphnia ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15345contigE-fasciculatus_F_contig15345:2524..2709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue6.8e-29
Seed eggNOG ortholog2880.D7FHV1
Preferred nameCEF1
KEGG koko:K12860
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000974,GO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006282,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007568,GO:0007569,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0019219,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031627,GO:0031848,GO:0031974,GO:0031981,GO:0032069,GO:0032074,GO:0032200,GO:0032204,GO:0032205,GO:0032207,GO:0032208,GO:0032210,GO:0032211,GO:0032213,GO:0032214,GO:0032502,GO:0032768,GO:0032770,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033262,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0042162,GO:0042592,GO:0042802,GO:0042803,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045292,GO:0045738,GO:0045786,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0046983,GO:0048239,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050999,GO:0051000,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051276,GO:0051336,GO:0051341,GO:0051346,GO:0051353,GO:0051641,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061820,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070727,GO:0071006,GO:0071012,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0072695,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090342,GO:0090344,GO:0090398,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902576,GO:1903506,GO:1903516,GO:1903517,GO:1903770,GO:1903824,GO:1904353,GO:1904354,GO:1904356,GO:1904357,GO:1904429,GO:1904430,GO:1904533,GO:1904534,GO:1905777,GO:1905778,GO:1905838,GO:1905839,GO:1990904,GO:2000104,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000772,GO:2000773,GO:2001020,GO:2001021,GO:2001141,GO:2001251
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0050@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.427183-CDS-E-fasciculatus_F_contig15345:2523..27091622928012.427183-CDS-E-fasciculatus_F_contig15345:2523..2709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15345 2524..2709 -
1695995788.3335662-CDS-E-fasciculatus_F_contig15345:2523..27091695995788.3335662-CDS-E-fasciculatus_F_contig15345:2523..2709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15345 2524..2709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15345.3757.1prot_E-fasciculatus_F_contig15345.3757.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15345 2524..2709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15345.3757.1

>prot_E-fasciculatus_F_contig15345.3757.1 ID=prot_E-fasciculatus_F_contig15345.3757.1|Name=mRNA_E-fasciculatus_F_contig15345.3757.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=62bp
YEWLDPSIKKTEWNREEEEKLLHMAKLMPNQWRTIAPIVGRTAAQCLQHY
ERLLDMAQDAGG
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mRNA from alignment at E-fasciculatus_F_contig15345:2524..2709-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15345.3757.1 ID=mRNA_E-fasciculatus_F_contig15345.3757.1|Name=mRNA_E-fasciculatus_F_contig15345.3757.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=186bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15345:2524..2709- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGAGTGGCTGGACCCTTCCATCAAGAAGACGGAATGGAACCGCGAGGA
GGAGGAGAAGCTGCTCCACATGGCCAAGCTCATGCCCAACCAGTGGCGGA
CGATCGCCCCCATAGTGGGTCGCACGGCCGCCCAGTGCCTGCAGCACTAC
GAGAGGCTGCTGGACATGGCCCAGGATGCCGGCGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15345:2524..2709-

>mRNA_E-fasciculatus_F_contig15345.3757.1 ID=mRNA_E-fasciculatus_F_contig15345.3757.1|Name=mRNA_E-fasciculatus_F_contig15345.3757.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15345:2524..2709- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGAGTGGCTGGACCCTTCCATCAAGAAGACGGAATGGAACCGCGAGGA
GGAGGAGAAGCTGCTCCACATGGCCAAGCTCATGCCCAACCAGTGGCGGA
CGATCGCCCCCATAGTGGGTCGCACGGCCGCCCAGTGCCTGCAGCACTAC
GAGAGGCTGCTGGACATGGCCCAGGATGCCGGCGGATACGAGTGGCTGGA
CCCTTCCATCAAGAAGACGGAATGGAACCGCGAGGAGGAGGAGAAGCTGC
TCCACATGGCCAAGCTCATGCCCAACCAGTGGCGGACGATCGCCCCCATA
GTGGGTCGCACGGCCGCCCAGTGCCTGCAGCACTACGAGAGGCTGCTGGA
CATGGCCCAGGATGCCGGCGGA
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