mRNA_E-fasciculatus_F_contig15341.3753.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15341.3753.1
Unique NamemRNA_E-fasciculatus_F_contig15341.3753.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15341.3753.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.560e-14
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 HDREGRVIAIEYPSVTVLALYVPNNGSKTESFQRR 105
            HDREGRVIAIEYPSVTVLALYVPNNGSK ESFQRR
Sbjct:  194 HDREGRVIAIEYPSVTVLALYVPNNGSKAESFQRR 228
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15341.3753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBX5_9PHAE4.560e-1497.14DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15341contigE-fasciculatus_F_contig15341:2473..2577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog2880.D7FVZ7
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009507,GO:0009536,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016889,GO:0016894,GO:0016895,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.1730022-CDS-E-fasciculatus_F_contig15341:2472..25771622928012.1730022-CDS-E-fasciculatus_F_contig15341:2472..2577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15341 2473..2577 +
1695995788.2467444-CDS-E-fasciculatus_F_contig15341:2472..25771695995788.2467444-CDS-E-fasciculatus_F_contig15341:2472..2577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15341 2473..2577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15341.3753.1prot_E-fasciculatus_F_contig15341.3753.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15341 2473..2577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15341.3753.1

>prot_E-fasciculatus_F_contig15341.3753.1 ID=prot_E-fasciculatus_F_contig15341.3753.1|Name=mRNA_E-fasciculatus_F_contig15341.3753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=35bp
HDREGRVIAIEYPSVTVLALYVPNNGSKTESFQRR
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mRNA from alignment at E-fasciculatus_F_contig15341:2473..2577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15341.3753.1 ID=mRNA_E-fasciculatus_F_contig15341.3753.1|Name=mRNA_E-fasciculatus_F_contig15341.3753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=105bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15341:2473..2577+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGACCGCGAGGGTCGTGTGATCGCCATCGAGTACCCCTCCGTGACCGT
GCTGGCTCTCTACGTGCCCAACAACGGCAGCAAGACGGAGAGCTTCCAGC
GCAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15341:2473..2577+

>mRNA_E-fasciculatus_F_contig15341.3753.1 ID=mRNA_E-fasciculatus_F_contig15341.3753.1|Name=mRNA_E-fasciculatus_F_contig15341.3753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=210bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15341:2473..2577+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGACCGCGAGGGTCGTGTGATCGCCATCGAGTACCCCTCCGTGACCGT
GCTGGCTCTCTACGTGCCCAACAACGGCAGCAAGACGGAGAGCTTCCAGC
GCAGGCATGACCGCGAGGGTCGTGTGATCGCCATCGAGTACCCCTCCGTG
ACCGTGCTGGCTCTCTACGTGCCCAACAACGGCAGCAAGACGGAGAGCTT
CCAGCGCAGG
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