mRNA_E-fasciculatus_F_contig1047.375.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1047.375.1
Unique NamemRNA_E-fasciculatus_F_contig1047.375.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 5.750e-56
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    4 QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFAL 303
            QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPS+VRKILTAVDPAV+SSYDSAEKPAAFAL
Sbjct:  174 QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEKPAAFAL 273
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC)

HSP 1 Score: 115 bits (288), Expect = 1.490e-29
Identity = 58/100 (58.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    4 QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFAL 303
            + L++ L AK  AEN+L+KYYTN  WTIIRPGGLKS+ ATG AILTEDT+A G I+R DVA LA++ALNS ++ RK+LTA+DP+++S+    ++  AFA+
Sbjct:  168 EALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGKQVEAFAV 267
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.580e-29
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    4 QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFAL 303
            + L++ L AK  AEN+L+KYYTNS W+IIRPGGLKS+ ATG AILTED K  G I+R DVA L V+ L SP + RKILTA+DP++ES+  +  +  AFAL
Sbjct:  164 EALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATGAEVEAFAL 263
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A7S0AIJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 8.710e-27
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    4 QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDS 276
            +VL+  L AK  AEN+L+KYYTN  WTI+RPGGLKS+ ATGTAILTE+  A G I+R DVADL VQALNS ++ RKIL+AVDP + +S ++
Sbjct:  185 EVLKDVLAAKERAENVLIKYYTNMNWTIVRPGGLKSEPATGTAILTENNLAIGSIHREDVADLVVQALNSGNTERKILSAVDPEISASANA 275
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA)

HSP 1 Score: 108 bits (269), Expect = 9.030e-27
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   10 LEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFAL 303
            LEKAL AKT AE ML KYYTN+ WTIIRPGGL++   TG AILTE+   AG+I RADVAD+ V+AL++  + +K+ TAVDP++ SS+  A K  AF L
Sbjct:  165 LEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASKAEAFPL 262
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A7S3DY81_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DY81_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.350e-26
Identity = 55/100 (55.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:    4 QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFAL 303
            +VL+  + AK  AEN+L+KYYTNS WTIIRPGGL S+  TG A+LT D    G+I+R DVA LA++A++SP++ R+IL+A+DP++ESSY + +   AFAL
Sbjct:  182 EVLKDVILAKNRAENLLVKYYTNSNWTIIRPGGLVSEPMTGKAVLTSDNTVLGLIHREDVARLALEAMDSPNTERQILSAIDPSIESSYATEKPIEAFAL 281
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.090e-26
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 QVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVES 264
            +VL+  L AK  AEN+L+KYYTN+ WTIIRPGGLKS+ ATG AILTED  A G I+R DVA LA+QAL SP + +KIL+AVDP + S
Sbjct:  179 EVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDPEITS 265
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A7S0XVS6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XVS6_HEMAN)

HSP 1 Score: 106 bits (265), Expect = 7.010e-26
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   10 LEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFAL 303
            +E  L  KT AEN+LLKYYTN+++TIIRPGGLKS+ ATG AILTED KAAG + R DVADL +QAL S S+ +K+LT VDP    S    + P AF+L
Sbjct:  204 MESFLTQKTKAENLLLKYYTNTDYTIIRPGGLKSEPATGKAILTEDKKAAGSVTREDVADLCIQALYSKSASQKVLTCVDP----SQSDKDAPEAFSL 297
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A7S0V021_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V021_9CRYP)

HSP 1 Score: 104 bits (260), Expect = 3.820e-25
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:   10 LEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFAL 303
            +EK L  KT AEN+LLKYYTN+++TIIRPGGLKS+AATG AILTED  A G + R DVADL ++AL S ++ +K+LT VDP    S    E P  FAL
Sbjct:  204 MEKFLTQKTKAENLLLKYYTNTDYTIIRPGGLKSEAATGKAILTEDKMAVGSVTREDVADLCIEALYSKTASQKVLTCVDP----SQSDKEGPVPFAL 297
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BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.890e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   10 LEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSSVRKILTAVDP 252
            LE ALKAK  AE +L KYYTNS+WT+IRPGGL +  AT  A+LTE+  A GVINRADVA L V+AL+S  + RK+LTAVDP
Sbjct:  193 LENALKAKEKAERVLTKYYTNSDWTVIRPGGLMNGEATSAAVLTENKMACGVINRADVASLVVKALDSQKTFRKVLTAVDP 273
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1047.375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ06_ECTSI5.750e-5698.00Epimerase/dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
B7FVE3_PHATC1.490e-2958.00Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3L6R6_9STRA7.580e-2959.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0AIJ9_9STRA8.710e-2762.64Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A835Z825_9STRA9.030e-2759.18Epimerase/dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
A0A7S3DY81_9STRA1.350e-2655.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2UDM5_9STRA5.090e-2664.37Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0XVS6_HEMAN7.010e-2660.20Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0V021_9CRYP3.820e-2559.18Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2V5P0_9STRA1.890e-2465.43Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1047contigE-fasciculatus_F_contig1047:18920..19225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2880.D7FJ06
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
BiGG ReactioniRC1080.CRv4_Au5_s6_g13409_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionepimerase/dehydrogenase
Ec32 orthologEc-07_004910.1
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927544.7522497-CDS-E-fasciculatus_F_contig1047:18919..192251622927544.7522497-CDS-E-fasciculatus_F_contig1047:18919..19225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1047 18920..19225 -
1695995588.1223233-CDS-E-fasciculatus_F_contig1047:18919..192251695995588.1223233-CDS-E-fasciculatus_F_contig1047:18919..19225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1047 18920..19225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1047.375.1prot_E-fasciculatus_F_contig1047.375.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1047 18920..19225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1047.375.1

>prot_E-fasciculatus_F_contig1047.375.1 ID=prot_E-fasciculatus_F_contig1047.375.1|Name=mRNA_E-fasciculatus_F_contig1047.375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
LQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDT
KAAGVINRADVADLAVQALNSPSSVRKILTAVDPAVESSYDSAEKPAAFA
L*
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mRNA from alignment at E-fasciculatus_F_contig1047:18920..19225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1047.375.1 ID=mRNA_E-fasciculatus_F_contig1047.375.1|Name=mRNA_E-fasciculatus_F_contig1047.375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1047:18920..19225- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCAGGTTCTTGAGAAGGCTTTGAAGGCGAAGACCTTGGCAGAAAACAT
GCTACTCAAGTACTACACTAACTCAGAGTGGACGATAATTCGCCCTGGGG
GACTCAAGAGCGACGCTGCCACCGGAACCGCTATACTAACAGAGGATACG
AAGGCGGCAGGGGTGATCAACAGGGCGGACGTGGCCGATCTGGCAGTGCA
AGCGTTGAACTCGCCTAGTAGCGTAAGAAAAATTCTCACCGCTGTAGATC
CCGCGGTTGAAAGCAGTTACGACAGTGCCGAGAAACCTGCGGCATTTGCT
CTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1047:18920..19225-

>mRNA_E-fasciculatus_F_contig1047.375.1 ID=mRNA_E-fasciculatus_F_contig1047.375.1|Name=mRNA_E-fasciculatus_F_contig1047.375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1047:18920..19225- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCAGGTTCTTGAGAAGGCTTTGAAGGCGAAGACCTTGGCAGAAAACAT
GCTACTCAAGTACTACACTAACTCAGAGTGGACGATAATTCGCCCTGGGG
GACTCAAGAGCGACGCTGCCACCGGAACCGCTATACTAACAGAGGATACG
AAGGCGGCAGGGGTGATCAACAGGGCGGACGTGGCCGATCTGGCAGTGCA
AGCGTTGAACTCGCCTAGTAGCGTAAGAAAAATTCTCACCGCTGTAGATC
CCGCGGTTGAAAGCAGTTACGACAGTGCCGAGAAACCTGCGGCATTTGCT
CTGTAGCTCCAGGTTCTTGAGAAGGCTTTGAAGGCGAAGACCTTGGCAGA
AAACATGCTACTCAAGTACTACACTAACTCAGAGTGGACGATAATTCGCC
CTGGGGGACTCAAGAGCGACGCTGCCACCGGAACCGCTATACTAACAGAG
GATACGAAGGCGGCAGGGGTGATCAACAGGGCGGACGTGGCCGATCTGGC
AGTGCAAGCGTTGAACTCGCCTAGTAGCGTAAGAAAAATTCTCACCGCTG
TAGATCCCGCGGTTGAAAGCAGTTACGACAGTGCCGAGAAACCTGCGGCA
TTTGCTCTGTAG
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