mRNA_E-fasciculatus_F_contig15320.3743.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig15320.3743.1
Unique Name	mRNA_E-fasciculatus_F_contig15320.3743.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: A0A6H5JTU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 6.920e-51
Identity = 87/94 (92.55%), Postives = 92/94 (97.87%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            G+HAHTY+GGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHD DFV+TFQSYFPISQ+SLLRRLVEAD FNLTSTT+HVLPAFKELFVATSFLG
Sbjct:  218 GMHAHTYQGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDLDFVKTFQSYFPISQTSLLRRLVEADEFNLTSTTEHVLPAFKELFVATSFLG 311

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: A0A6H5KZE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE8_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.280e-44
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            G H HTYRGGDLGEEMSH+QGAVVVRRPDL +AP SLAPAHD DF +TFQSYFPISQ+SLLRR+VEAD FNLTSTT HV PAF ELFVAT+F G
Sbjct:  210 GTHVHTYRGGDLGEEMSHVQGAVVVRRPDLAQAPVSLAPAHDVDFDKTFQSYFPISQNSLLRRIVEADEFNLTSTTHHVEPAFAELFVATNFFG 303

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.830e-44
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            GVH HTYR GDLGEEMSH+QGAVVVRRPDL +APGS+APA D DFV+T QSYFPISQSSLLRR+VEADGFNLTSTT+HV PAF EL VAT F G
Sbjct:  209 GVHTHTYREGDLGEEMSHVQGAVVVRRPDLAQAPGSVAPAQDVDFVKTLQSYFPISQSSLLRRIVEADGFNLTSTTQHVEPAFAELLVATDFFG 302

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: A0A6H5L311_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L311_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.340e-43
Identity = 78/94 (82.98%), Postives = 80/94 (85.11%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            G H HTYRGGDLGEEMSHIQGAVVVRRPDL  APGSLAPAHD DFV+TFQSYFPISQ+SLLRR VEADGFNLTS TKHV P FK L    SFLG
Sbjct:  225 GTHLHTYRGGDLGEEMSHIQGAVVVRRPDLAWAPGSLAPAHDLDFVKTFQSYFPISQNSLLRRFVEADGFNLTSETKHVKPTFKTLLGVDSFLG 318

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: A0A6H5L1R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.510e-41
Identity = 75/100 (75.00%), Postives = 82/100 (82.00%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLR------RLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            GVH HTYRGGDLGEEMSH+QGAVVVRRPDL +AP S+APA + DFV+T QSYFPISQSSLLR      R+VEAD FNLTSTT+HV PAF EL VAT F G
Sbjct:  207 GVHTHTYRGGDLGEEMSHVQGAVVVRRPDLAQAPESVAPAQNVDFVKTLQSYFPISQSSLLRSLLDYARIVEADEFNLTSTTQHVEPAFAELLVATDFFG 306

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: D8LIQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.200e-40
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            G H HTYRGGDLGEEMSH++G VVVRRPDL RAPG+LAPA+D DF+RTFQSYFPISQSSLLR ++ AD  N+TSTTKH LP F EL   TSFLG
Sbjct:   43 GDHVHTYRGGDLGEEMSHVRGTVVVRRPDLARAPGTLAPAYDVDFIRTFQSYFPISQSSLLRGMLTADEQNMTSTTKHALPKFPELLGVTSFLG 136

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: A0A6H5JZT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.660e-40
Identity = 74/94 (78.72%), Postives = 79/94 (84.04%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            G H HTYRGGDLGEEMSHIQGAVVVRR DL RAPG+LAPAHD DFVRTFQSYFPIS+SSLLR ++EAD  N+TSTT H LP F EL   TSFLG
Sbjct:  218 GDHVHTYRGGDLGEEMSHIQGAVVVRRTDLARAPGTLAPAHDVDFVRTFQSYFPISRSSLLRGMLEADEQNMTSTTTHTLPKFPELLGVTSFLG 311

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.820e-37
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            G+H HTY+GGDLGEEMSHIQGAVVVRRPDL R PGSLAPA D DFV+T QSYFPISQ SLLRR+VEAD F+L STT HV P F  L     FLG
Sbjct:  403 GIHLHTYQGGDLGEEMSHIQGAVVVRRPDLTREPGSLAPAPDMDFVKTLQSYFPISQGSLLRRMVEADDFDLESTTVHVHPRFPTLLGVRPFLG 496

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: D8LIQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ6_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.170e-29
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1

Query:    1 GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRL 192
            G+HAHTY+GGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHD DFV+TFQSYF I+QSSLLR L
Sbjct:   57 GMHAHTYQGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDLDFVKTFQSYFQIAQSSLLRLL 120

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BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Match: D7FWK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.870e-29
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 1

Query:   46 MSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQSYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG 282
            MSH QGAVVVRRPDL R PGSLAPA D DFVRT +SYFPISQSSLLRR+VEADGF+L STT+HV P F  L     FLG
Sbjct:    1 MSHTQGAVVVRRPDLTREPGSLAPAQDVDFVRTLESYFPISQSSLLRRMVEADGFDLKSTTEHVRPKFGTLLGVRPFLG 79

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig15320.3743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5JTU1_9PHAE	6.920e-51	92.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZE8_9PHAE	1.280e-44	81.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWK6_ECTSI	4.830e-44	81.91	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L311_9PHAE	1.340e-43	82.98	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1R7_9PHAE	1.510e-41	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LIQ4_ECTSI	1.200e-40	75.53	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JZT9_9PHAE	1.660e-40	78.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7Y8_9PHAE	3.820e-37	74.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LIQ6_ECTSI	1.170e-29	89.06	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FWK4_ECTSI	1.870e-29	74.68	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig15320	contig	E-fasciculatus_F_contig15320:33..1137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	160.2
Seed ortholog evalue	4.6e-37
Seed eggNOG ortholog	2880.D7FWK6
EggNOG free text desc.	Protein of unknown function (DUF563)
EggNOG OGs	2E14A@1,2S8GN@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	283
Cds size	282
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928011.030413-CDS-E-fasciculatus_F_contig15320:32..217	1622928011.030413-CDS-E-fasciculatus_F_contig15320:32..217	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15320 33..217 +
1695995787.7993474-CDS-E-fasciculatus_F_contig15320:32..217	1695995787.7993474-CDS-E-fasciculatus_F_contig15320:32..217	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15320 33..217 +
1622928011.043125-CDS-E-fasciculatus_F_contig15320:1039..1136	1622928011.043125-CDS-E-fasciculatus_F_contig15320:1039..1136	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15320 1040..1136 +
1695995787.8124669-CDS-E-fasciculatus_F_contig15320:1039..1136	1695995787.8124669-CDS-E-fasciculatus_F_contig15320:1039..1136	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15320 1040..1136 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig15320.3743.1	prot_E-fasciculatus_F_contig15320.3743.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig15320 33..1136 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig15320:33..1137+
coding sequence from alignment at E-fasciculatus_F_contig15320:33..1137+

protein sequence of mRNA_E-fasciculatus_F_contig15320.3743.1

>prot_E-fasciculatus_F_contig15320.3743.1 ID=prot_E-fasciculatus_F_contig15320.3743.1|Name=mRNA_E-fasciculatus_F_contig15320.3743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
GVHAHTYRGGDLGEEMSHIQGAVVVRRPDLVRAPGSLAPAHDADFVRTFQ
SYFPISQSSLLRRLVEADGFNLTSTTKHVLPAFKELFVATSFLG

mRNA from alignment at E-fasciculatus_F_contig15320:33..1137+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig15320.3743.1 ID=mRNA_E-fasciculatus_F_contig15320.3743.1|Name=mRNA_E-fasciculatus_F_contig15320.3743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1105bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15320:33..1137+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGTTCACGCGCACACGTATCGGGGGGGTGACCTCGGAGAGGAGATGTC
GCACATCCAGGGAGCGGTGGTGGTCCGCCGGCCCGACCTCGTGCGGGCCC
CCGGATCCCTGGCGCCTGCCCACGACGCGGACTTCGTCAGGACGTTTCAG
TCCTACTTCCCTATCTCGCAAAGCTCGCTGCTAAGGTGTGTTGTGTCTCC
TTTCCGAGGCAACCCGTTCGTGACAATGGCTTAACCCCTCTCTCGTTACA
ACATGAAGGTATTTACGCTACAGAAAAGCTGTATGTGACCTCGGATTCTA
GCGCTTCAGTTGGAGAGCCAACCCCAAAGGTAAGATAGAAACTGCGAGCG
AGACGATTAGTGGACGGAATGAAAGAGAATATATGGTCACCGGTATGAGG
TGCGGGTGTAAATAGCGTATTCACCTCGATCGGGAGAAGCTGCACTTAGA
TCAGATCTCGTAGTGCCCCAGCTTCAGGCAAGCTCTTGCCGCTTGCCTGT
AGTGTGCGCGGAATTACAAACGCCATTGGAAGTGGCTTGCTTATGGTTAG
GGTCACGATACGGCAGTTCAGGGTCACAGCGCAATGAAACCGTCGGTCGT
TGTTATATCAGCATGAAGGGCGCCTCCTGGGTAACGGCTTCGTGATTTGC
TCCCCTCACTCAACTATGTACGATAGACTATATGTTCTCTTCCTCGATGT
AGCGCTTCGATTGCTTGTGAAATCCGATGAAACACGACAATTGCGTTCTC
CTCACCCGCAGGCAAAATGCTCAGCCATTTGAAGTTGCTCCAGCAGGCGA
TAACGTGTTGGGTGATAGCATTTGCGTTGTTGTAGGAGCGAAATCACGGC
TGTCCTCGCACAGTCTTGCTTGTTGATTTCTTCTAGTGTCCTCAGTTAAG
CCGCCTAAGATTTCCCACCTGCCCTATTGTCGGAGCTCACTGCTTCCCTG
TAGCACAACACATCCCCATCCTCTCGCGCGCGGTTTCGTCATAACCTTCT
GAAACAGGCGATTGGTCGAGGCCGACGGCTTTAACTTGACGTCCACGACC
AAGCACGTGCTTCCGGCGTTCAAAGAGTTGTTTGTTGCCACTTCTTTCTT
AGGTG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15320:33..1137+

>mRNA_E-fasciculatus_F_contig15320.3743.1 ID=mRNA_E-fasciculatus_F_contig15320.3743.1|Name=mRNA_E-fasciculatus_F_contig15320.3743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15320:33..1137+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGTTCACGCGCACACGTATCGGGGGGGTGACCTCGGAGAGGAGATGTC
GCACATCCAGGGAGCGGTGGTGGTCCGCCGGCCCGACCTCGTGCGGGCCC
CCGGATCCCTGGCGCCTGCCCACGACGCGGACTTCGTCAGGACGTTTCAG
TCCTACTTCCCTATCTCGCAAAGCTCGCTGCTAAGGGGGTTCACGCGCAC
ACGTATCGGGGGGGTGACCTCGGAGAGGAGATGTCGCACATCCAGGGAGC
GGTGGTGGTCCGCCGGCCCGACCTCGTGCGGGCCCCCGGATCCCTGGCGC
CTGCCCACGACGCGGACTTCGTCAGGACGTTTCAGTCCTACTTCCCTATC
TCGCAAAGCTCGCTGCTAAGGCGATTGGTCGAGGCCGACGGCTTTAACTT
GACGTCCACGACCAAGCACGTGCTTCCGGCGTTCAAAGAGTTGTTTGTTG
CCACTTCTTTCTTAGGTGCGATTGGTCGAGGCCGACGGCTTTAACTTGAC
GTCCACGACCAAGCACGTGCTTCCGGCGTTCAAAGAGTTGTTTGTTGCCA
CTTCTTTCTTAGGT