mRNA_E-fasciculatus_F_contig153.3736.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig153.3736.1
Unique NamemRNA_E-fasciculatus_F_contig153.3736.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: D8LF06_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF06_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 1.410e-143
Identity = 212/219 (96.80%), Postives = 215/219 (98.17%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKIVRGPPTPDLGAAAASAEAAAMPVQG 832
            MDTLLGIAGEGFVVLAADAQVARSILLYKN+ DKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIID CIKELHTRFLIAQKNFVIK VVTAEGIK+VRGPPTPDLGAA ASAEAAA+PVQG
Sbjct:    1 MDTLLGIAGEGFVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDNCIKELHTRFLIAQKNFVIK-VVTAEGIKVVRGPPTPDLGAAGASAEAAAVPVQG 218
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: A0A836CPT6_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT6_9STRA)

HSP 1 Score: 241 bits (615), Expect = 4.330e-77
Identity = 126/196 (64.29%), Postives = 154/196 (78.57%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKIVR 763
            MD+L G+AG+GFVVLAADAQVARSILLY+N  DKI  L  +K +A AGPQ+DC  F EYI KNMALYELNND++L+TKAAA +IR ELA ALRKGP+Q  +LMGGVD   AG   A+L+WLDYLGTLQ V YGA GYGAAFTLS++DR Y  G++  +A+ ++  CI  LH RFLIAQ NFVIK VV  +GI++++
Sbjct:    1 MDSLFGVAGDGFVVLAADAQVARSILLYQNDLDKIKELDSHKMMALAGPQADCNLFGEYIQKNMALYELNNDLRLSTKAAANYIRRELATALRKGPYQVNMLMGGVD---AGA--AALYWLDYLGTLQPVKYGAQGYGAAFTLSLLDRSYRVGMAEADAVELVRSCIAALHKRFLIAQPNFVIK-VVDKDGIRVLK 190
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: W7TFQ9_9STRA (Proteasome subunit beta n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFQ9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 6.810e-69
Identity = 116/202 (57.43%), Postives = 150/202 (74.26%), Query Frame = 2 
Query:  149 QQPTRS*AEMDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIK 754
            Q  T   A MDTLLGI G+GFV++AADA  ARSIL++K  QDKIA L  +K LA AGP +DC + TEY+ KNMALYE NND+KL T AAA FIR  LA ALRKGP+QT LL+GG D+    KD A+L++LDYLG++QKV +GA GY + FTLS+ DREY +G++L EA  +++K  KEL  RFLI+Q  +++K VV  +G++
Sbjct:   36 QHRTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDE----KDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMK-VVDKDGVR 232
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: A0A6U4C0Y9_9STRA (Proteasome subunit beta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4C0Y9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 7.260e-69
Identity = 109/195 (55.90%), Postives = 145/195 (74.36%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKIV 760
            MD+ +G+ G+GFV+LAADA   RSIL+YK   DKI  +++N+ +A  GPQ+DC  F EYI KNM LYEL N + L+T  AA FIRGELAKALR+GP+Q  LL+GG  K E    EASLFW+DYLGTLQKV YGAHGY + F LS++D  + KGL+ ++A+ ++ KCIKEL TRF+IA   + +K VV +EG++++
Sbjct:   44 MDSTIGMRGDGFVLLAADANAGRSILIYKQDLDKILPISENQIMATVGPQADCSVFGEYIQKNMRLYELENQINLSTFGAANFIRGELAKALRRGPYQVNLLLGGAAKDE----EASLFWMDYLGTLQKVNYGAHGYASNFVLSLLDAHWEKGLTEEQAIEVLRKCIKELETRFMIALPKWSVK-VVDSEGVRVI 233
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: K8ZB45_NANGC (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZB45_NANGC)

HSP 1 Score: 222 bits (566), Expect = 2.300e-67
Identity = 116/203 (57.14%), Postives = 150/203 (73.89%), Query Frame = 2 
Query:  146 PQQPTRS*AEMDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIK 754
            P   T   A MDTLLGI G+GFV++AADA  ARSIL++K  QDKIA L  +K LA AGP +DC + TEY+ KNMALYE NND+KL T AAA FIR  LA ALRKGP+QT LL+GG D+    KD A+L++LDYLG++QKV +GA GY + FTLS+ DREY +G++L EA  +++K  KEL  RFLI+Q  +++K VV  +G++
Sbjct:  163 PMLKTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDE----KDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMK-VVDKDGVR 360
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: A0A7S2XJE8_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 9.690e-66
Identity = 108/195 (55.38%), Postives = 145/195 (74.36%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNND-VKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKI 757
            MDT+ G++ EG VV+AAD   ARSIL Y+++ DK+  L+ + A+  AGP SD V+FT+YI+KN  LYEL+ND ++L+T A A F RGELA ALRKGPFQ  +L+GG D+   G    SL++LDY+G +QKVPYG  GY  AF LSVMDR++ KGL   EA+ I++KCI+EL TRFLI+Q NF+IK V+  +G+K+
Sbjct:    1 MDTVFGVSYEGGVVIAADQSNARSILTYQSNLDKVTELSSHSAMGVAGPNSDLVNFTQYIAKNFKLYELSNDGMQLSTAAQANFCRGELATALRKGPFQVNVLLGGFDEGVGG----SLYFLDYMGAMQKVPYGCQGYAGAFCLSVMDRQWTKGLDEAEAVAIVEKCIQELKTRFLISQPNFMIK-VINKDGVKV 190
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: A0A6V1PTT6_HETAK (Proteasome subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PTT6_HETAK)

HSP 1 Score: 209 bits (531), Expect = 2.430e-64
Identity = 110/193 (56.99%), Postives = 138/193 (71.50%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIK 754
            MD L G+ G+G+V+LAADA   RSI++YK+  DKI  L  NK LA AGP +D V+F EYI KN+ALYEL ND+KL T A A FIR  LA ALRKGP+QT LL+GG D+   GKD   L+W+DYLG + K+ +GAHGYG++FTLS+ D E+ +GLS  E L II  CI EL TRFLI+   FV K +V A G++
Sbjct:    1 MDALFGLKGDGYVMLAADANQGRSIIVYKSDYDKIMPLDSNKLLAQAGPNADTVNFGEYIQKNLALYELTNDLKLNTSATAHFIRRTLADALRKGPYQTNLLLGGKDE---GKDP-ELYWMDYLGAMHKLNFGAHGYGSSFTLSIFDSEWREGLSEAEGLEIIRHCIAELRTRFLISMPKFVCK-IVDANGMR 188
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: A0A7S2FKQ2_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKQ2_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.060e-63
Identity = 104/195 (53.33%), Postives = 143/195 (73.33%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKIV 760
            MDT+LGI G+GF ++ AD   ARSI+++  ++DKI  L  +K +  +GPQ D  +F EYI KNM LYELNND+KL+T A A F+R +LA ALRKGP+QT +L+GG D+  AG   ASL++LD    L  V +GAHGY + F LS+ DREY +G+S++EA  +IDKCI ELHTRFLI+Q NF+IK +V  +G++++
Sbjct:   25 MDTVLGIKGDGFTMIVADRTSARSIMVFNQAEDKITELDSHKIIGQSGPQCDTANFAEYIQKNMTLYELNNDMKLSTFATANFMRRQLATALRKGPYQTNILLGGYDEG-AG---ASLYFLDLYSALTPVNFGAHGYASNFCLSIFDREYKEGMSVEEAKAVIDKCIAELHTRFLISQPNFLIK-IVDKDGVRVM 214
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BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: B7FVS5_PHATC (Proteasome subunit beta n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVS5_PHATC)

HSP 1 Score: 204 bits (519), Expect = 1.990e-62
Identity = 102/194 (52.58%), Postives = 140/194 (72.16%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKI 757
            MDT+ G+  EG V+LAAD   ARSILLY+ + DK+  L  + A+  +GP  D V+F E+++KN+ LYEL+ND+KL+T A A F RGELA ALRKGPFQ   L+GG D +      ASL++LDY+  LQKV YG+ GY + F LS+MD+EY   L+  +A+ I+++CI ELHTRFLI+QKNF+IK VV  +G+++
Sbjct:    1 MDTVFGVQYEGGVILAADQSNARSILLYQTNLDKVKELTSHSAMGVSGPNCDMVNFCEFVAKNIKLYELSNDIKLSTHAQANFARGELATALRKGPFQVNTLLGGFDNKVG----ASLYYLDYMAALQKVNYGSQGYASNFCLSIMDKEYRDDLNEADAVKIVEQCIHELHTRFLISQKNFIIK-VVDKDGVRL 189
[Close]
BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Match: A0A7S3H6V1_9STRA (Proteasome subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6V1_9STRA)

HSP 1 Score: 203 bits (516), Expect = 4.500e-62
Identity = 99/195 (50.77%), Postives = 139/195 (71.28%), Query Frame = 2 
Query:  176 MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKIV 760
            MD++  + G+G+ ++AADA  ARSIL++K+ +DKI  L  +K L  AG  +DC  F EYI +N+ LYELNND+KL+T  +A +IRGELA ALRKGP+Q+ LL+ G D     +D  SL+ +DY+ +L KV +GAHGY A F LSV DR++ KG++L E L ++ +CI EL TRFLI+Q  F++K VV A G ++V
Sbjct:    1 MDSVFALVGDGYAIVAADASAARSILVFKHDEDKIMELDSHKLLVGAGVPADCAHFNEYIQRNLTLYELNNDIKLSTHGSANYIRGELATALRKGPYQSNLLLAGYD----AQDGVSLYHMDYMASLSKVNFGAHGYAANFILSVFDRDWKKGMNLQEGLEVVRRCIHELRTRFLISQPVFILK-VVDAAGTRVV 190
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig153.3736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF06_ECTSI1.410e-14396.80Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CPT6_9STRA4.330e-7764.29Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
W7TFQ9_9STRA6.810e-6957.43Proteasome subunit beta n=1 Tax=Nannochloropsis ga... [more]
A0A6U4C0Y9_9STRA7.260e-6955.90Proteasome subunit beta n=2 Tax=Phaeomonas parva T... [more]
K8ZB45_NANGC2.300e-6757.14Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S2XJE8_9STRA9.690e-6655.38Proteasome subunit beta n=1 Tax=Attheya septentrio... [more]
A0A6V1PTT6_HETAK2.430e-6456.99Proteasome subunit beta n=1 Tax=Heterosigma akashi... [more]
A0A7S2FKQ2_9STRA1.060e-6353.33Proteasome subunit beta n=1 Tax=Florenciella parvu... [more]
B7FVS5_PHATC1.990e-6252.58Proteasome subunit beta n=2 Tax=Phaeodactylum tric... [more]
A0A7S3H6V1_9STRA4.500e-6250.77Proteasome subunit beta n=1 Tax=Spumella elongata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig153contigE-fasciculatus_F_contig153:23667..28410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.9
Seed ortholog evalue9.3e-113
Seed eggNOG ortholog2880.D8LF06
Preferred namePSMB2
KEGG koko:K02734,ko:K08471,ko:K12847,ko:K18626
KEGG Pathwayko03040,ko03050,map03040,map03050
KEGG ModuleM00337,M00340,M00354
GOsGO:0000003,GO:0000502,GO:0003674,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0014070,GO:0016020,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0030234,GO:0031090,GO:0031323,GO:0031325,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0080090,GO:0090068,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0177@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04030,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-21_006230.1
Exons5
Model size835
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig153.3736.1prot_E-fasciculatus_F_contig153.3736.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig153 23667..28235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.497679-CDS-E-fasciculatus_F_contig153:23666..237741622928009.497679-CDS-E-fasciculatus_F_contig153:23666..23774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 23667..23774 -
1695995787.2010262-CDS-E-fasciculatus_F_contig153:23666..237741695995787.2010262-CDS-E-fasciculatus_F_contig153:23666..23774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 23667..23774 -
1622928009.5126932-CDS-E-fasciculatus_F_contig153:24622..247871622928009.5126932-CDS-E-fasciculatus_F_contig153:24622..24787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 24623..24787 -
1695995787.2340093-CDS-E-fasciculatus_F_contig153:24622..247871695995787.2340093-CDS-E-fasciculatus_F_contig153:24622..24787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 24623..24787 -
1622928009.5315218-CDS-E-fasciculatus_F_contig153:25748..258741622928009.5315218-CDS-E-fasciculatus_F_contig153:25748..25874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 25749..25874 -
1695995787.2456648-CDS-E-fasciculatus_F_contig153:25748..258741695995787.2456648-CDS-E-fasciculatus_F_contig153:25748..25874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 25749..25874 -
1622928009.5457046-CDS-E-fasciculatus_F_contig153:26338..265671622928009.5457046-CDS-E-fasciculatus_F_contig153:26338..26567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 26339..26567 -
1695995787.2609556-CDS-E-fasciculatus_F_contig153:26338..265671695995787.2609556-CDS-E-fasciculatus_F_contig153:26338..26567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 26339..26567 -
1622928009.5563219-CDS-E-fasciculatus_F_contig153:28203..282351622928009.5563219-CDS-E-fasciculatus_F_contig153:28203..28235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 28204..28235 -
1695995787.2706375-CDS-E-fasciculatus_F_contig153:28203..282351695995787.2706375-CDS-E-fasciculatus_F_contig153:28203..28235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 28204..28235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.5665357-UTR-E-fasciculatus_F_contig153:28235..284101622928009.5665357-UTR-E-fasciculatus_F_contig153:28235..28410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig153 28236..28410 -
1695995787.2809083-UTR-E-fasciculatus_F_contig153:28235..284101695995787.2809083-UTR-E-fasciculatus_F_contig153:28235..28410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig153 28236..28410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig153.3736.1

>prot_E-fasciculatus_F_contig153.3736.1 ID=prot_E-fasciculatus_F_contig153.3736.1|Name=mRNA_E-fasciculatus_F_contig153.3736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
MDTLLGIAGEGFVVLAADAQVARSILLYKNSQDKIAHLADNKALACAGPQ
SDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQ
LLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREY
VKGLSLDEALGIIDKCIKELHTRFLIAQKNFVIKKVVTAEGIKIVRGPPT
PDLGAAAASAEAAAMPVQG*
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mRNA from alignment at E-fasciculatus_F_contig153:23667..28410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig153.3736.1 ID=mRNA_E-fasciculatus_F_contig153.3736.1|Name=mRNA_E-fasciculatus_F_contig153.3736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig153:23667..28410- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCTTGTCACCTGGCCATTGTAGTGAGGAGGGGTACTGCACATCTTTGT
CTGGAAGTGGAGATCAAAGAACGGTGGAGTTAAAGAGAGTCCGTTCGGAG
GACGACAGAGAGAGGAGAGCAGGAACATCGGGAGCAGCTCTTTGCCCGCA
GCAGCCGACTAGGAGCTAGGCAGAGATGGACACCTTGTTGGGGATCGCGG
GGGAAGGGTGAGCCACGTCCGAATTATCCTTGAGACTGGGAACCAGGGCG
CGTGTTTGCTGCAAGCTTTGTTGAGCGTTGCAAAGTCGGTAGCTGATGCG
TGCAGACAGAGCCCGTTGGATCACACACACCCCGGTTCGCGTGGCAACCA
AGCTGCGCGTTGGAGCGACCATCCGCACCTATACATATCCATCCACAACA
GGATTGATTCTCATGGTGCGTTGTGTCGTTGTCTCACTCTCTAACGATCC
GCTATCTGTACATGAGGCCCTCATTGCAGAAGATGCTAAAATAGGGAAGG
AAGGATGTACTGCTTACAGAGAGACAAGGCAATGTGCAAGCTCTTTGGTT
GCACTGCAGGTGCCTGCAACGGCGTTGCAGATGGAGAGGGCTAGAGGGGT
ATAGCAGCACTGTGGTGGAAAGAGATCAACTCGTTCACGTTGGCATCCCC
TATGCATACGGTATTATGAAATCGCTACAGCAGCAGCAGCAGCAGTAGTA
GTAGTAGCACTCGAAGGAGACAGGGGAATCGCCGTGAGCGGTCTCACTAG
GCCACGGCTTAGCGAAGAAATGCCCGACACACGCAAACAGCAGTCAGTTG
GCAGATACGAGGGTGCTCGGTGCTCGCTTCGCCCGCCGAGGAACACACGA
CGAGACGAGACTATTCGAGACTATTTGCGACAGTTGCAATAGCGCACGAG
TTCACTCAGACAAGCTGACACCCACATAAGCCCGAAGCATGCCAATCCCT
CTCCTCTCATCACCGCACAAACCACACTTATAGTCATGTATCACTCTGTA
GGGAAGGTTAAGGTTCGGATGCGAGATTTCGGCGACACACCCGAAACATC
CCCGAACGAAAACAAGGATCATGCCAACACGGTTCCAGGGTGTGTGGGCG
CCGGCAATGTGTTCTTTTCGTCCAATGCGTGCTTTTTTGGGCAGTATGAC
TGTGGTTGCGATGGTGTAGTCGGCAGGCCCGGCGGTGTCGACCGGCGCTC
AACAGACGTAAAGCAGTATACGAGAAGCTTGTCACTGCAGTCTGTGCAGG
TCTGCCGAAGCAGGGCAGCAGTTACGGAAGACCCTGTCCGCACCAAATTT
TTGACGCCTGCTTGGCCTGCTGTGTACTTCTATACTATAGGAGCGTTGCA
CATCGCCCTCGAACTCATGACCGAACACCCTTCACACCCGGTCCGTATAA
CCTAGACTCCCGAGCACCACCCTGTCGTGGCCCTACTACCGCTGTAGCCT
TCAGATATGTATCGAGCAGCAGTATACTCACGCCCCGCCCTCGAAAGGCC
TCTGGGGCAATGCTAGTCCTGTCAGGTCCTATGGTTCCTAGCCACACCTT
CGCTGAATGATGCCTATTATAGATACTTGTGTACGTTCCCACGCGCCATC
CTCCTTCCTTCATCCACCAACTGCTGCGGCGTAGGCTAACGAATTGACTG
CCGTTGTAAACCACGTGTACGAGCAACTTTACTTCTAACTCGGGCAAGCT
TGCAAGAAACTTTTGCACTCTTTGACACCTCCAAGCCAACGAAGAGGACC
TTGATTTCCCAACTCGGGCAAGCTTGCAAGAACCTTTTTGCACTCTTTTG
TCTCCAAGCCTAATGAAGTCTCCCCTTGCAACGTACCTTCCAGGTTTGTG
GTACTGGCAGCAGACGCACAAGTGGCGCGGTCTATCCTCCTGTACAAGAA
CAGCCAGGACAAGATCGCGCACCTCGCGGACAACAAGGCCCTCGCCTGCG
CCGGCCCCCAGTCCGACTGCGTCTCCTTCACCGAGTATATCTCGAAGAAC
ATGGCTCTGTATGAGCTGAACAACGACGTCAAGCTCACCACCAAAGCGGC
GGCCACCTTCATCCGGGGCGAGGTGTGAAGCTGCATTGTATTGTACTCTG
CTGCTGCAGCGTTCCTTGTCGGCGTAGATGGATCATTACACGCCCTCTGT
ACCCGGCTGAATGCCTACGTCTGAACACTGACGGTATGATACTTAACACT
TGTTGGAACGATAATTATGATGCAGCTGCCTGGCTGGATGCACATTGGTG
TATTTCATATGTTGCGCATCTGTATCGGAGAGCATCGATGAATAGTCGTC
CATCTGTATGACGCTTCTGGTGGAAGGATCTTCTTAAAAATAAAAACTCT
TTAATGCCTTTTTGCATGAGATTTTTCAACCTTTGCCATTTTCTATACTA
ACGAGCTTGCCCGGCAGCCCTGCACCCAGGAGAAGTTGATCGAGGTTACC
GTGTTCACCATGGCGTGCTTTTGAGCAGCAGGCGGCTTGCCTAACGCGCT
TTCCCTCGTTTCCCTGCGTTTGTGTGCCGTACGCAGCTAGCAAAGGCACT
CCGGAAGGGACCCTTTCAGACGCAGCTCTTGATGGGAGGCGTTGACAAGC
GGGAAGCGGGCAAGGACGAGGCGTCGTTGTTCTGGCTGGACTACCTCGGG
ACCCTGCAGAAGGCAAGTCGCAAGTTGCCTTTCCTCACAGCCAGCTTTCC
CCACAGTCAGTCACCCTAGAGGCACACGCCTTGTCGCAGCAGTCAGACCA
CTGTACGGAGACCTTTCGCTGACTGCACGTGTAGCAACCGTGTGGAATTG
GTTGGATCGCCTTCGCGATAAATTAAGTGAAGTGTTACGAGGAAATAGCA
GAACAAGCAGAACAGGGAGGGGGTACGCAGACCCTATCCCTATCCCTAAC
CCTATCCCTAACCCTGACCCGACTTCCCCGATTGCATCCCTCATCCTAAC
ATGCGTATGGTACCTAATAGAAGAGGATAAGCCTGCGAAGGCTACTGAAT
TGTTTGTCTTGGCGCCAGTTGTTGCTGACGCTTTACTTTGATGGCCCATC
GGAAGCTACCATGGTACAGTATGAGATATGTGGCCCTCAGTCGCCGTCAA
GGCCACAACTCAAGCACGACGCAGACGGGAAAATGGTCGAGTGCGTGGGC
TCTCAACGAAAGCGGCCGCCCCCCCAACCCCTTCACTGCTGTTGCGCGTA
TATAGTCATGAGAGTCACATGCGTCGGATGAATCGGTGGATGAGGCGGAG
GTTTTGTAGGCGTCTTGTTTATTCCGTTGCATTTGGCGAGGCATCTTCTC
AGTGCGCATCGTCAGAGGCGAGAAAACACACATGCCAGGACCTGGAACGT
CGTGTTAATTCCGCGCGACCGGTCTACACTACAGTACTCACCTTTCGTCG
CTGGCTGTTGAGCACCAAGTCAGCGTCGAAACCTATCTCTTCCACCCAGC
CCCCCGTTGCTATTATAGTTGTCCGATCTGTGTTGTCGAGCTCATCGCTG
AGCACCCCTTCCACCGTGATGCGTAAGCACCATTCCTTGAAAGCTCTAAG
CGCCGTAAAACAACAGCCGTCACTGACCATTGCCGCGATGTCATGCTGGG
CCCCTTTTTTTTTTGTTTCTCAGGTGCCGTACGGCGCACACGGGTATGGC
GCGGCGTTCACTTTGTCGGTGATGGACCGGGAGTACGTCAAGGGTCTCTC
GCTCGATGAGGCGTTGGGCATCATCGACAAGTGCATCAAGGAGCTGCACA
CACGCTTCCTCATTGCGCAAAAGAACTTTGTCATCAAGGTGCGACAGTGC
GTTCTTTTTCGAACATGATTCCGTTAGATATCCCTCCGATCTCTGAGTGT
TGCAGTTGGTAAGGATTTTTTCTCGAACCACAAGAGGTTTCTAAATATGG
TGGAAGCATTTAATCGTACATGTAGTCGAATGTTGCTCCGTTCGAGATGC
ATCCCGCAAATGAACATCGCCTCGATACCTCGCCGATGAAACGCACCACG
TTACGCTGGTGATGGCAACGTTGGATCCGTTTCTCGTTTCCGTGTTTGAC
GTAAATGACCTTGCCGTGTAGGAGCGGATCGCGATGGAGTTGCCCGTTCG
AGTACTGTATTCGTGTTCGTCTCCTGTTTCTTGATCTCTTCCTCCACCTT
GTTACCCGATTTGATATTTTCGTTGTTATTTTTCACCCCGTCCGAATAGT
GTTTGATTTTTTTTTTGAGAGTCTTCTCTATTTGATGGTGCACTTTGCCA
TGGTATGGATGACAGGAAGTGCTAAACGAGAGCACCTAACAGCAGTAGCA
CAGCGAGGTGCAACCTTAGCTGGCTTCTTGCAGGAGATGGTTGAGACCCC
TGAGATCCCAGACGAATAGCAGTCTACAGGAGTATCGTATCGTCCCTTCG
TTGCCTTCTTCTCTGATGAGTCTGCCACTCGAGACCTCCTCTCTCGGCGT
AGTCGATCTACAGAGTGCGCACGCGAGAATGCAGAAAGTTGCCAGCCCTT
GGTATTGATGGAGAACCATCACGATGCGCTCTGTTGACTGGCTAGCCTCA
TTCGTTCAACTTCTGGTGACGTCCTTTTTTTGCTCTGACGTCTCACACAT
CATTGTATTGCCCAACCAACGTCTCTCATTGGCGAGAAGGTGGTGACGGC
TGAGGGTATCAAGATCGTGCGAGGACCCCCAACTCCGGATTTGGGAGCCG
CAGCGGCAAGCGCAGAGGCGGCGGCGATGCCCGTGCAGGGCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig153:23667..28410-

>mRNA_E-fasciculatus_F_contig153.3736.1 ID=mRNA_E-fasciculatus_F_contig153.3736.1|Name=mRNA_E-fasciculatus_F_contig153.3736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig153:23667..28410- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACACCTTGTTGGGGATCGCGGGGGAAGGATGGACACCTTGTTGGGG
ATCGCGGGGGAAGGGTTTGTGGTACTGGCAGCAGACGCACAAGTGGCGCG
GTCTATCCTCCTGTACAAGAACAGCCAGGACAAGATCGCGCACCTCGCGG
ACAACAAGGCCCTCGCCTGCGCCGGCCCCCAGTCCGACTGCGTCTCCTTC
ACCGAGTATATCTCGAAGAACATGGCTCTGTATGAGCTGAACAACGACGT
CAAGCTCACCACCAAAGCGGCGGCCACCTTCATCCGGGGCGAGGTTTGTG
GTACTGGCAGCAGACGCACAAGTGGCGCGGTCTATCCTCCTGTACAAGAA
CAGCCAGGACAAGATCGCGCACCTCGCGGACAACAAGGCCCTCGCCTGCG
CCGGCCCCCAGTCCGACTGCGTCTCCTTCACCGAGTATATCTCGAAGAAC
ATGGCTCTGTATGAGCTGAACAACGACGTCAAGCTCACCACCAAAGCGGC
GGCCACCTTCATCCGGGGCGAGCTAGCAAAGGCACTCCGGAAGGGACCCT
TTCAGACGCAGCTCTTGATGGGAGGCGTTGACAAGCGGGAAGCGGGCAAG
GACGAGGCGTCGTTGTTCTGGCTGGACTACCTCGGGACCCTGCAGAAGCT
AGCAAAGGCACTCCGGAAGGGACCCTTTCAGACGCAGCTCTTGATGGGAG
GCGTTGACAAGCGGGAAGCGGGCAAGGACGAGGCGTCGTTGTTCTGGCTG
GACTACCTCGGGACCCTGCAGAAGGTGCCGTACGGCGCACACGGGTATGG
CGCGGCGTTCACTTTGTCGGTGATGGACCGGGAGTACGTCAAGGGTCTCT
CGCTCGATGAGGCGTTGGGCATCATCGACAAGTGCATCAAGGAGCTGCAC
ACACGCTTCCTCATTGCGCAAAAGAACTTTGTCATCAAGGTGCCGTACGG
CGCACACGGGTATGGCGCGGCGTTCACTTTGTCGGTGATGGACCGGGAGT
ACGTCAAGGGTCTCTCGCTCGATGAGGCGTTGGGCATCATCGACAAGTGC
ATCAAGGAGCTGCACACACGCTTCCTCATTGCGCAAAAGAACTTTGTCAT
CAAGAAGGTGGTGACGGCTGAGGGTATCAAGATCGTGCGAGGACCCCCAA
CTCCGGATTTGGGAGCCGCAGCGGCAAGCGCAGAGGCGGCGGCGATGCCC
GTGCAGGGCTGAAAGGTGGTGACGGCTGAGGGTATCAAGATCGTGCGAGG
ACCCCCAACTCCGGATTTGGGAGCCGCAGCGGCAAGCGCAGAGGCGGCGG
CGATGCCCGTGCAGGGCTGA
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