mRNA_E-fasciculatus_F_contig15261.3713.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15261.3713.1
Unique NamemRNA_E-fasciculatus_F_contig15261.3713.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15261.3713.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.490e-29
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    4 VVAYEDTAFFLESDTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAGEHSPLLGW 168
            V  YEDTAF+LE+DTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAGEHSPLLGW
Sbjct:  162 VEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAGEHSPLLGW 216
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BLAST of mRNA_E-fasciculatus_F_contig15261.3713.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.130e-27
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 VVAYEDTAFFLESDTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAGEHSPLLGW 168
            VV YEDTAF+LE+DT DPCGGHATPTG+YHYH TAGCLQEQAGAV GEHSP+LGW
Sbjct:  147 VVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQAGAVKGEHSPVLGW 201
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BLAST of mRNA_E-fasciculatus_F_contig15261.3713.1 vs. uniprot
Match: D8LCJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.460e-9
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   13 YEDTAFFLESDTLDPCGGHATPTGSYHYHSTA 108
            Y DTAF+LE+D+ DPCGGHATP G YHYH TA
Sbjct:  114 YFDTAFYLEADSFDPCGGHATPNGFYHYHGTA 145
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BLAST of mRNA_E-fasciculatus_F_contig15261.3713.1 vs. uniprot
Match: A0A150G9L9_GONPE (YHYH domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G9L9_GONPE)

HSP 1 Score: 50.4 bits (119), Expect = 9.040e-6
Identity = 25/49 (51.02%), Postives = 28/49 (57.14%), Query Frame = 1 
Query:   25 AFFLESDTLDPCGGHATPTGSYHYHSTAG--CLQEQAGAVAGEHSPLLG 165
            A+  E  T D C GHA+P GSYHYHS  G  C+       AG HSPL G
Sbjct:  101 AYIYEGATFDGCRGHASPGGSYHYHSEPGPGCVYND---TAGRHSPLFG 146
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15261.3713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUL4_ECTSI4.490e-2992.73YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KP42_9PHAE2.130e-2785.45YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LCJ4_ECTSI1.460e-975.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A150G9L9_GONPE9.040e-651.02YHYH domain-containing protein n=1 Tax=Gonium pect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15261contigE-fasciculatus_F_contig15261:2618..2785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue4.6e-24
Seed eggNOG ortholog2880.D7FUL4
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928007.2842617-CDS-E-fasciculatus_F_contig15261:2617..27851622928007.2842617-CDS-E-fasciculatus_F_contig15261:2617..2785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15261 2618..2785 +
1695995786.1661713-CDS-E-fasciculatus_F_contig15261:2617..27851695995786.1661713-CDS-E-fasciculatus_F_contig15261:2617..2785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15261 2618..2785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15261.3713.1prot_E-fasciculatus_F_contig15261.3713.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15261 2618..2785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15261.3713.1

>prot_E-fasciculatus_F_contig15261.3713.1 ID=prot_E-fasciculatus_F_contig15261.3713.1|Name=mRNA_E-fasciculatus_F_contig15261.3713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
PVVAYEDTAFFLESDTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAGEH
SPLLGW
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mRNA from alignment at E-fasciculatus_F_contig15261:2618..2785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15261.3713.1 ID=mRNA_E-fasciculatus_F_contig15261.3713.1|Name=mRNA_E-fasciculatus_F_contig15261.3713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15261:2618..2785+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGTCGTAGCGTACGAGGACACGGCCTTCTTCCTAGAATCCGACACCCT
CGACCCGTGCGGGGGGCACGCGACCCCCACGGGGTCCTACCACTACCACA
GCACGGCGGGGTGCCTGCAGGAACAGGCGGGGGCGGTCGCGGGGGAGCAC
TCTCCGCTGCTGGGCTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15261:2618..2785+

>mRNA_E-fasciculatus_F_contig15261.3713.1 ID=mRNA_E-fasciculatus_F_contig15261.3713.1|Name=mRNA_E-fasciculatus_F_contig15261.3713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15261:2618..2785+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGTCGTAGCGTACGAGGACACGGCCTTCTTCCTAGAATCCGACACCCT
CGACCCGTGCGGGGGGCACGCGACCCCCACGGGGTCCTACCACTACCACA
GCACGGCGGGGTGCCTGCAGGAACAGGCGGGGGCGGTCGCGGGGGAGCAC
TCTCCGCTGCTGGGCTGGCCCGTCGTAGCGTACGAGGACACGGCCTTCTT
CCTAGAATCCGACACCCTCGACCCGTGCGGGGGGCACGCGACCCCCACGG
GGTCCTACCACTACCACAGCACGGCGGGGTGCCTGCAGGAACAGGCGGGG
GCGGTCGCGGGGGAGCACTCTCCGCTGCTGGGCTGG
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