mRNA_E-fasciculatus_F_contig15220.3693.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15220.3693.1
Unique NamemRNA_E-fasciculatus_F_contig15220.3693.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15220.3693.1 vs. uniprot
Match: D7FHC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.150e-20
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 2 
Query:   17 QRNRSDGNGTCAGGLPRTFELAYGGNRTLPIPFEASAGELAEALQDLPTTMATVTRSTEDELSPL 211
            Q N SDGNGTC G LP+TFELAYGG RTLPIPF ASAG++AEALQ L    ATVTRS  DELSPL
Sbjct:  178 QGNGSDGNGTCVGDLPQTFELAYGGERTLPIPFGASAGKVAEALQGLRAPSATVTRSPVDELSPL 242
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BLAST of mRNA_E-fasciculatus_F_contig15220.3693.1 vs. uniprot
Match: D7FHD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD6_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.500e-20
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 2 
Query:   23 NRSDGNGTCAGGLPRTFELAYGGNRTLPIPFEASAGELAEALQDLPTTMATVTRSTEDELSPL 211
            N S+GNGTC G LP TFELAYGG RTLPIPFEASAGE+AEAL+ L T  ATV+RS  DELSPL
Sbjct:  629 NGSNGNGTCVGDLPLTFELAYGGERTLPIPFEASAGEVAEALKALRTPTATVSRSNGDELSPL 691
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15220.3693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHC7_ECTSI2.150e-2075.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHD6_ECTSI5.500e-2076.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15220contigE-fasciculatus_F_contig15220:860..1496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size215
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.7356887-CDS-E-fasciculatus_F_contig15220:859..9871622928004.7356887-CDS-E-fasciculatus_F_contig15220:859..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15220 860..987 +
1695995784.892742-CDS-E-fasciculatus_F_contig15220:859..9871695995784.892742-CDS-E-fasciculatus_F_contig15220:859..987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15220 860..987 +
1622928004.7529428-CDS-E-fasciculatus_F_contig15220:1411..14961622928004.7529428-CDS-E-fasciculatus_F_contig15220:1411..1496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15220 1412..1496 +
1695995784.9045784-CDS-E-fasciculatus_F_contig15220:1411..14961695995784.9045784-CDS-E-fasciculatus_F_contig15220:1411..1496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15220 1412..1496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15220.3693.1prot_E-fasciculatus_F_contig15220.3693.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15220 860..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15220.3693.1

>prot_E-fasciculatus_F_contig15220.3693.1 ID=prot_E-fasciculatus_F_contig15220.3693.1|Name=mRNA_E-fasciculatus_F_contig15220.3693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
MFATSPAKPIRRQRHVRGRSPANIRAGLRWKPYPSHPLRSERWRAGGGSP
RSPHYDGDSYQIDRRRAVSSV
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mRNA from alignment at E-fasciculatus_F_contig15220:860..1496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15220.3693.1 ID=mRNA_E-fasciculatus_F_contig15220.3693.1|Name=mRNA_E-fasciculatus_F_contig15220.3693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=637bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15220:860..1496+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGCCACCTCGCCAGCGAAACCGATCAGACGGCAACGGCACGTGCG
CGGGAGGTCTCCCGCGAACATTCGAGCTGGCCTACGGTGGAAACCGTACC
CTTCCCATCCCCTTCGAAGCGAGCGCTGGTGAGGATGAGATAGATGGCTT
CGGGATATTTTACCCCGAAAGATCACAAGTGTTGTCGTTGTTGAAAAGAG
TTCTGGCAAAGCCTGGCCTCTCCTGATTTCTTCCGATGGTGTGCGATCGT
GATTGATTTTGATTGCGACTGAGGAAGATCGCTTCCCGTTCTCCCGATTG
CGGCGTGATTCCTTGTTTTTTGTGCAACAGCGGGGCATGTATATCCTTGC
GGTGCCGACGCCATGTTTAGATAATCAGACACCTTCTTGCGAAAGCATGA
AAGCAGGCTGACTGCACAAGCTCTCGCATTGAGTGCCCACGTTTTTCGTT
GTTTAAGGCCATGCGGCACAAGTGACAAAGAAACGAACTCGCCTTGCTCT
CTACATCTCCAAGCAAATCCCCCTCCGCCATCGTGTTGTATTCGGGAGTT
AGGCGAGCTGGCGGAGGCTCTCCAAGATCTCCCCACTACGATGGCGACAG
TTACCAGATCGACCGAAGACGAGCTGTCTCCTCTGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15220:860..1496+

>mRNA_E-fasciculatus_F_contig15220.3693.1 ID=mRNA_E-fasciculatus_F_contig15220.3693.1|Name=mRNA_E-fasciculatus_F_contig15220.3693.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15220:860..1496+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGCCACCTCGCCAGCGAAACCGATCAGACGGCAACGGCACGTGCG
CGGGAGGTCTCCCGCGAACATTCGAGCTGGCCTACGGTGGAAACCGTACC
CTTCCCATCCCCTTCGAAGCGAGCGCTGATGTTCGCCACCTCGCCAGCGA
AACCGATCAGACGGCAACGGCACGTGCGCGGGAGGTCTCCCGCGAACATT
CGAGCTGGCCTACGGTGGAAACCGTACCCTTCCCATCCCCTTCGAAGCGA
GCGCTGGCGAGCTGGCGGAGGCTCTCCAAGATCTCCCCACTACGATGGCG
ACAGTTACCAGATCGACCGAAGACGAGCTGTCTCCTCTGTGGCGAGCTGG
CGGAGGCTCTCCAAGATCTCCCCACTACGATGGCGACAGTTACCAGATCG
ACCGAAGACGAGCTGTCTCCTCTGTG
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