mRNA_E-fasciculatus_F_contig15214.3688.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15214.3688.1
Unique NamemRNA_E-fasciculatus_F_contig15214.3688.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15214.3688.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.740e-9
Identity = 81/121 (66.94%), Postives = 84/121 (69.42%), Query Frame = 1 
Query:    4 GSPAATGVAPPTSESAGDAEGKAAAPPNDKGTGRAGAGARAAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARFANAYVGSSDDSEIPESRGSADSNSSSDDGSEP 366
            GSPA TGV PPT  SAGDA GKA APP            +AAAP              XXXXXXXXXXXXXXXXXXXXXXXXXXXX  FA+AYVGSSDDSE+PESR SA S SSSDDGSEP
Sbjct:  754 GSPAVTGVVPPTPGSAGDAAGKATAPPT-----------KAAAPGPSSTTRGRRRQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFADAYVGSSDDSEVPESRESAHSTSSSDDGSEP 863
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BLAST of mRNA_E-fasciculatus_F_contig15214.3688.1 vs. uniprot
Match: D7FPI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.540e-8
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 3 
Query:    6 VSCGHGRRPPYLRVGRRRGREGRRAAERQGYWSRG 110
            VSCGHGRRP YLRVGRR GR+GRRAAER+GY SRG
Sbjct:  173 VSCGHGRRPTYLRVGRRCGRKGRRAAEREGYLSRG 207
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BLAST of mRNA_E-fasciculatus_F_contig15214.3688.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  262 ARFANAYVGSSDDSEIPESRGSADSNSSSDDGSEP 366
            ARFANA+VGSSDDSE+PESR SADSNSSSDDGSEP
Sbjct:  439 ARFANAHVGSSDDSEVPESRESADSNSSSDDGSEP 473
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15214.3688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE7.740e-966.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI0_ECTSI1.540e-885.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNQ4_ECTSI2.980e-791.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15214contigE-fasciculatus_F_contig15214:2337..2705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.1796608-CDS-E-fasciculatus_F_contig15214:2336..27051622928004.1796608-CDS-E-fasciculatus_F_contig15214:2336..2705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15214 2337..2705 +
1695995784.616319-CDS-E-fasciculatus_F_contig15214:2336..27051695995784.616319-CDS-E-fasciculatus_F_contig15214:2336..2705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15214 2337..2705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15214.3688.1prot_E-fasciculatus_F_contig15214.3688.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15214 2337..2705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15214.3688.1

>prot_E-fasciculatus_F_contig15214.3688.1 ID=prot_E-fasciculatus_F_contig15214.3688.1|Name=mRNA_E-fasciculatus_F_contig15214.3688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
AGSPAATGVAPPTSESAGDAEGKAAAPPNDKGTGRAGAGARAAAPPKAAA
PRGRRRQRQSAPPEKAAAPGPSSATRGGRQQRHAGKPARFANAYVGSSDD
SEIPESRGSADSNSSSDDGSEP*
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mRNA from alignment at E-fasciculatus_F_contig15214:2337..2705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15214.3688.1 ID=mRNA_E-fasciculatus_F_contig15214.3688.1|Name=mRNA_E-fasciculatus_F_contig15214.3688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=369bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15214:2337..2705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGGGTCTCCTGCGGCCACGGGCGTCGCCCCCCCTACCTCCGAGTCGGC
AGGAGACGCGGAAGGGAAGGCCGCCGCGCCGCCGAACGACAAGGGTACTG
GTCGCGCGGGCGCGGGCGCACGCGCCGCGGCGCCGCCGAAGGCGGCGGCG
CCACGTGGTAGACGGCGGCAGAGACAGTCTGCGCCGCCGGAGAAGGCGGC
GGCGCCAGGGCCGTCAAGCGCAACACGTGGGGGACGGCAGCAGAGGCACG
CCGGGAAACCTGCCAGATTTGCGAACGCGTATGTGGGGTCCAGTGATGAC
AGCGAGATTCCCGAGAGCAGGGGATCAGCAGACTCAAACAGTAGTAGCGA
CGATGGGAGCGAGCCTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15214:2337..2705+

>mRNA_E-fasciculatus_F_contig15214.3688.1 ID=mRNA_E-fasciculatus_F_contig15214.3688.1|Name=mRNA_E-fasciculatus_F_contig15214.3688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15214:2337..2705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGGGTCTCCTGCGGCCACGGGCGTCGCCCCCCCTACCTCCGAGTCGGC
AGGAGACGCGGAAGGGAAGGCCGCCGCGCCGCCGAACGACAAGGGTACTG
GTCGCGCGGGCGCGGGCGCACGCGCCGCGGCGCCGCCGAAGGCGGCGGCG
CCACGTGGTAGACGGCGGCAGAGACAGTCTGCGCCGCCGGAGAAGGCGGC
GGCGCCAGGGCCGTCAAGCGCAACACGTGGGGGACGGCAGCAGAGGCACG
CCGGGAAACCTGCCAGATTTGCGAACGCGTATGTGGGGTCCAGTGATGAC
AGCGAGATTCCCGAGAGCAGGGGATCAGCAGACTCAAACAGTAGTAGCGA
CGATGGGAGCGAGCCTTGAGCAGGGTCTCCTGCGGCCACGGGCGTCGCCC
CCCCTACCTCCGAGTCGGCAGGAGACGCGGAAGGGAAGGCCGCCGCGCCG
CCGAACGACAAGGGTACTGGTCGCGCGGGCGCGGGCGCACGCGCCGCGGC
GCCGCCGAAGGCGGCGGCGCCACGTGGTAGACGGCGGCAGAGACAGTCTG
CGCCGCCGGAGAAGGCGGCGGCGCCAGGGCCGTCAAGCGCAACACGTGGG
GGACGGCAGCAGAGGCACGCCGGGAAACCTGCCAGATTTGCGAACGCGTA
TGTGGGGTCCAGTGATGACAGCGAGATTCCCGAGAGCAGGGGATCAGCAG
ACTCAAACAGTAGTAGCGACGATGGGAGCGAGCCTTGA
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