mRNA_E-fasciculatus_F_contig1513.3641.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1513.3641.1
Unique NamemRNA_E-fasciculatus_F_contig1513.3641.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1513.3641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1513contigE-fasciculatus_F_contig1513:13806..14790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size646
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1513.3641.1prot_E-fasciculatus_F_contig1513.3641.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1513 13806..14774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.1395233-CDS-E-fasciculatus_F_contig1513:13805..143961622927994.1395233-CDS-E-fasciculatus_F_contig1513:13805..14396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 13806..14396 -
1695995781.4312093-CDS-E-fasciculatus_F_contig1513:13805..143961695995781.4312093-CDS-E-fasciculatus_F_contig1513:13805..14396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 13806..14396 -
1622927994.161743-CDS-E-fasciculatus_F_contig1513:14735..147741622927994.161743-CDS-E-fasciculatus_F_contig1513:14735..14774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 14736..14774 -
1695995781.442378-CDS-E-fasciculatus_F_contig1513:14735..147741695995781.442378-CDS-E-fasciculatus_F_contig1513:14735..14774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 14736..14774 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.1801095-UTR-E-fasciculatus_F_contig1513:14774..147901622927994.1801095-UTR-E-fasciculatus_F_contig1513:14774..14790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1513 14775..14790 -
1695995781.452127-UTR-E-fasciculatus_F_contig1513:14774..147901695995781.452127-UTR-E-fasciculatus_F_contig1513:14774..14790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1513 14775..14790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1513.3641.1

>prot_E-fasciculatus_F_contig1513.3641.1 ID=prot_E-fasciculatus_F_contig1513.3641.1|Name=mRNA_E-fasciculatus_F_contig1513.3641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=210bp
MQLISAGEPVPHASAAIAAAIASASAPAPATTVTAAGPTIYPMMASNTLA
APAPMQTSSRSPRRPLYFHGTPTASWDGAGADGGAGHGITVGNGRDSGSG
GSRRSGSGSASGSTSNSSTSSSGRGGGGERQPRPAAAATDANSRATATGP
TATTATVTPTCGLYGALSTNAVAERINSRSITAHWLSPPAAAEVRGPRGD
HAMHWGGRAN
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mRNA from alignment at E-fasciculatus_F_contig1513:13806..14790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1513.3641.1 ID=mRNA_E-fasciculatus_F_contig1513.3641.1|Name=mRNA_E-fasciculatus_F_contig1513.3641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=985bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1513:13806..14790- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAGATATCTGAGAGCATGCAGCTCATATCGGCAGGCGAACCCGTTCCAC
ACGCGGTAAGAACCCGGCGTGTAATGTGCGAACCAGGGCGACATATAACG
TGCGAACCAAGAAAGATGCGCAGTATCAGGGGAAGGCTGGGGTCCGCGGT
TCCGGTCTATGATGTACCTTGCCCTGGCGCACCGAATGCCATACTATCCC
CGGGGCCCCGGTACTCGTACCCGCGTGACTAAATATCTTGTTGAGTGAGT
CGACGCCTTAGACCTACTTTCCGCATAACGTCACCGCTCTCCTTGACGCC
CTCTTCCCACCCGCTCTCCCCGACCCCGCCCGTGGCGCACCGGCTGAACA
AACAAAAAAACAATCGTTTGAACCAATCCACATCCAACCAAAAGTCAGCC
GCGATCGCAGCTGCCATCGCATCTGCATCGGCACCGGCGCCAGCTACGAC
TGTGACTGCCGCTGGCCCGACAATCTACCCAATGATGGCTTCGAATACGC
TAGCAGCACCAGCACCGATGCAAACATCATCAAGGTCACCTCGACGCCCT
CTGTATTTCCACGGGACCCCCACCGCCTCGTGGGACGGCGCCGGCGCCGA
CGGGGGTGCCGGTCACGGCATCACCGTCGGCAACGGCAGAGACAGTGGCA
GCGGCGGTAGCCGCCGGAGTGGCAGTGGCAGTGCCAGCGGCAGCACCAGC
AACAGCAGCACCAGCAGCAGTGGCAGAGGAGGTGGCGGAGAAAGGCAGCC
GAGGCCAGCAGCTGCTGCAACAGATGCGAATTCTCGAGCAACAGCGACGG
GTCCAACCGCTACCACCGCCACCGTCACTCCAACATGCGGATTGTACGGG
GCTCTCTCGACAAACGCAGTCGCGGAAAGAATCAACAGTAGGAGTATCAC
TGCACACTGGCTGTCCCCACCAGCAGCGGCGGAGGTACGGGGGCCGCGAG
GAGACCACGCGATGCATTGGGGCGGAAGAGCGAAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1513:13806..14790-

>mRNA_E-fasciculatus_F_contig1513.3641.1 ID=mRNA_E-fasciculatus_F_contig1513.3641.1|Name=mRNA_E-fasciculatus_F_contig1513.3641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1513:13806..14790- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGCTCATATCGGCAGGCGAACCCGTTCCACACGCGATGCAGCTCAT
ATCGGCAGGCGAACCCGTTCCACACGCGTCAGCCGCGATCGCAGCTGCCA
TCGCATCTGCATCGGCACCGGCGCCAGCTACGACTGTGACTGCCGCTGGC
CCGACAATCTACCCAATGATGGCTTCGAATACGCTAGCAGCACCAGCACC
GATGCAAACATCATCAAGGTCACCTCGACGCCCTCTGTATTTCCACGGGA
CCCCCACCGCCTCGTGGGACGGCGCCGGCGCCGACGGGGGTGCCGGTCAC
GGCATCACCGTCGGCAACGGCAGAGACAGTGGCAGCGGCGGTAGCCGCCG
GAGTGGCAGTGGCAGTGCCAGCGGCAGCACCAGCAACAGCAGCACCAGCA
GCAGTGGCAGAGGAGGTGGCGGAGAAAGGCAGCCGAGGCCAGCAGCTGCT
GCAACAGATGCGAATTCTCGAGCAACAGCGACGGGTCCAACCGCTACCAC
CGCCACCGTCACTCCAACATGCGGATTGTACGGGGCTCTCTCGACAAACG
CAGTCGCGGAAAGAATCAACAGTAGGAGTATCACTGCACACTGGCTGTCC
CCACCAGCAGCGGCGGAGGTACGGGGGCCGCGAGGAGACCACGCGATGCA
TTGGGGCGGAAGAGCGAATTCAGCCGCGATCGCAGCTGCCATCGCATCTG
CATCGGCACCGGCGCCAGCTACGACTGTGACTGCCGCTGGCCCGACAATC
TACCCAATGATGGCTTCGAATACGCTAGCAGCACCAGCACCGATGCAAAC
ATCATCAAGGTCACCTCGACGCCCTCTGTATTTCCACGGGACCCCCACCG
CCTCGTGGGACGGCGCCGGCGCCGACGGGGGTGCCGGTCACGGCATCACC
GTCGGCAACGGCAGAGACAGTGGCAGCGGCGGTAGCCGCCGGAGTGGCAG
TGGCAGTGCCAGCGGCAGCACCAGCAACAGCAGCACCAGCAGCAGTGGCA
GAGGAGGTGGCGGAGAAAGGCAGCCGAGGCCAGCAGCTGCTGCAACAGAT
GCGAATTCTCGAGCAACAGCGACGGGTCCAACCGCTACCACCGCCACCGT
CACTCCAACATGCGGATTGTACGGGGCTCTCTCGACAAACGCAGTCGCGG
AAAGAATCAACAGTAGGAGTATCACTGCACACTGGCTGTCCCCACCAGCA
GCGGCGGAGGTACGGGGGCCGCGAGGAGACCACGCGATGCATTGGGGCGG
AAGAGCGAAT
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