mRNA_E-fasciculatus_F_contig15121.3633.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15121.3633.1
Unique NamemRNA_E-fasciculatus_F_contig15121.3633.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 1.430e-99
Identity = 165/175 (94.29%), Postives = 171/175 (97.71%), Query Frame = 1 
Query:    1 GGQGAGEFDGGSNPTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDKSTAGPRGKEVTKDAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGGGRSPQEGGAGGRQQHATIRDGTGAS 525
            GG+GAGEFDGGSNPTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDK+T+GPRGKEVTK+AFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDR QEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGGGRSPQEG AGGRQ+ AT RDGTG+S
Sbjct:  675 GGEGAGEFDGGSNPTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDKATSGPRGKEVTKEAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRMQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGGGRSPQEGEAGGRQERATSRDGTGSS 849
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 8.860e-98
Identity = 164/177 (92.66%), Postives = 170/177 (96.05%), Query Frame = 1 
Query:    1 GGQGAGEFDGGSNPTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDKSTAGPRGKEVTKDAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGGGRSPQEGGAGGRQQHATIRDGTGASAD 531
            GG+ AG+FDGGSNPTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDK+T+GPRGKEVTK+AFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDR QEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGGGRSPQEGGA GRQ+ ATI  GTG SAD
Sbjct:  687 GGESAGDFDGGSNPTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDKATSGPRGKEVTKEAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRMQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGGGRSPQEGGAEGRQERATIIAGTGPSAD 863
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A7S4DHJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHJ8_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 1.230e-15
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  226 KDAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLF 441
            K  FD  ++ LV  + + ED++ LLSFAL+N+FF+YD  Q  +  LRDL CGLS LC G+KS+KLAF + L+
Sbjct:    2 KAEFDAAVRALVPERFLTEDDKGLLSFALSNLFFSYDLAQADKAALRDLLCGLSLLCAGTKSAKLAFTFQLY 73
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A7S1G6W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6W4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.100e-13
Identity = 46/143 (32.17%), Postives = 80/143 (55.94%), Query Frame = 1 
Query:   19 EFDGGSNPTSQVLFTFPLVPDV--ELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDKSTAGPRGKEVTKDAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLF 441
            +++G ++  ++ +F F L  +    L +   DV  +QR+    RL  + P+ +   F  ++  G     + K  FD  +++LV  +S+ ++++  LSFAL+N+F+A+DR Q G V   + A G S L  GSKS KL+ A+ LF
Sbjct:  263 DYEGSADEGAEPVFEFQLSAEGGDALQITASDVANLQRLNDKARLQRMSPEQLYRAFASEAKDGV----LDKSGFDRVVRQLVPGESLTKEDKGYLSFALSNVFYAFDRDQNGVVDFNEFASGFSILAGGSKSDKLSLAFHLF 401
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A7S3UWA7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA7_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 2.510e-11
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:  106 DVDFVQRIVVGTRLAALLPQDILETFRDKSTAGPRGKEVTKDAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLF-----GGGGRSPQEGGAG 480
            D+D  +RI     ++ L  +D+   +          + +TK+ ++  +++LV   ++   ++ +LS   + IFFA D  +E + L R L CGLS LC GSKS KLAF Y LF     GG     QE GAG
Sbjct:    2 DLDESERIRAVADISRLSHRDVESIYDAIRLYSTDPEYITKEEYNQCLRDLVPGSTLSTSDKHMLSTEFSKIFFALDPAEEDKALHRHLICGLSLLCAGSKSVKLAFTYRLFQQGDQGGAAAEGQEPGAG 131
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A7S2K2V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2V1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-10
Identity = 47/141 (33.33%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:   40 PTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETFRDKSTAGPRGKEVTKDAFDTGMQELVRLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGGGRSP 462
            P + V+FTFPL     L+V+++DV +V+++V    L  + P  I +  +   T       +T   F   M  L+   ++  D    +   L N   ++D  Q G V    LA GL+ LC G KS KLAF++ LF G G SP
Sbjct:  223 PNTDVMFTFPLAKGNSLIVLKDDVIYVRKVVHQLGLTKISPDAIWDALKAYPT-------MTNAQFVNTMCSLLAHNNVRVDNE--VQILLQNYQSSFDIHQTGYVPSNQLAGGLTLLCDGRKSHKLAFSFQLFSGDGMSP 354
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A7S1VNM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNM3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.880e-9
Identity = 45/160 (28.12%), Postives = 70/160 (43.75%), Query Frame = 1 
Query:   40 PTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETF------------------RDKSTAGPRGKEVTKDAFDTGMQELVRLQSMLEDERDL--------LSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLF 441
            P   +LFTFPL  +  L+V++ED  +V+ +V    L  +   D+ +                    R +     +  +V +  F    +E++   S   + R          +S  L N F ++D  Q  RV L  L  GLS LC G KS+KLAF++ LF
Sbjct:   59 PPEDILFTFPLANERSLIVLREDATYVRSVVEKLGLLTMTSDDVWKLLYKNVKSRPAPPPQPWTRSRQRKPGTGKSVDVDQSTFVRCTEEIIHTNSKGNNGRKRQSGTKGTSISETLVNFFQSFDLEQIDRVALNQLMGGLSLLCGGKKSTKLAFSFGLF 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A7S3L262_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L262_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.150e-8
Identity = 45/144 (31.25%), Postives = 67/144 (46.53%), Query Frame = 1 
Query:   40 PTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDI-------LETFRDKSTAGPRGKEVTKDAFDTGMQELV---RLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLF 441
            P  ++LFTFPL     L+V+++D  +V+ +V    L ++ P D+       +E  R   T G     V    F   MQ +    RL +         +  L+N F  +D      V L +L  GL+ LC G KS KLAFA+ +F
Sbjct:  684 PPPEILFTFPLANQSSLVVLRDDAYYVRSVVQELGLLSMNPDDLWASLLAKVEQQRKSLTMGGGAVYVGMSIFVGAMQSICPMSRLHNSAFRSEASTAELLSNFFQCFDLEANDNVALDELMGGLTLLCGGRKSHKLAFAFGVF 827
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A6V2DIZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2DIZ4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.030e-8
Identity = 45/163 (27.61%), Postives = 73/163 (44.79%), Query Frame = 1 
Query:   46 SQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETF-----------------------RDKSTAGPRGKEVTKDAFDTGMQELV------RLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGG 447
            S+VLFTFPL     L+V++ED  +V+ +V    L +   ++I  +                        R+K+    +  +V +  F   +  LV      + +   + +  +    L N F ++D  Q  RV +  L  GLS LC G KS+KLAF++ LF G
Sbjct: 1202 SEVLFTFPLANHQSLVVLREDAAYVRTVVTQLGLLSFSCEEIWSSLYKYVRNNPPYWQNSSSTSTAASQRNKTNGSGKCTDVDQATFVEAVDSLVNPSRGKKKKQQSQRDESISRVTLKNFFSSFDLEQVDRVAVNQLMGGLSLLCGGKKSTKLAFSFGLFDG 1364
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Match: A0A7S1ZFP8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZFP8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.090e-8
Identity = 45/163 (27.61%), Postives = 73/163 (44.79%), Query Frame = 1 
Query:   46 SQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLAALLPQDILETF-----------------------RDKSTAGPRGKEVTKDAFDTGMQELV------RLQSMLEDERDLLSFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGG 447
            S+VLFTFPL     L+V++ED  +V+ +V    L +   ++I  +                        R+K+    +  +V +  F   +  LV      + +   + +  +    L N F ++D  Q  RV +  L  GLS LC G KS+KLAF++ LF G
Sbjct: 1199 SEVLFTFPLANHQSLVVLREDAAYVRTVVTQLGLLSFSCEEIWSSLYKYVRNNPPFWQNSSSTSTAASQRNKTNGSGKCTDVDQATFVEAVDSLVNPSRGKKKKQQSQRDESISRVTLKNFFSSFDLEQVDRVAVNQLMGGLSLLCGGKKSTKLAFSFGLFDG 1361
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15121.3633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FUX5_ECTSI1.430e-9994.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYX4_9PHAE8.860e-9892.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DHJ8_HETAK1.230e-1551.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1G6W4_9STRA3.100e-1332.17Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3UWA7_HETAK2.510e-1134.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2K2V1_9STRA5.030e-1033.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1VNM3_9STRA3.880e-928.13Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S3L262_9STRA2.150e-831.25Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6V2DIZ4_9STRA4.030e-827.61Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1ZFP8_9STRA4.090e-827.61Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15121contigE-fasciculatus_F_contig15121:2..2604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.0
Seed ortholog evalue1.7e-85
Seed eggNOG ortholog2880.D7FUX5
EggNOG OGs2CU92@1,2RK0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size531
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15121.3633.1prot_E-fasciculatus_F_contig15121.3633.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15121 2..2604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.6957018-CDS-E-fasciculatus_F_contig15121:1..1361622927993.6957018-CDS-E-fasciculatus_F_contig15121:1..136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 2..136 +
1695995781.2308025-CDS-E-fasciculatus_F_contig15121:1..1361695995781.2308025-CDS-E-fasciculatus_F_contig15121:1..136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 2..136 +
1622927993.7144895-CDS-E-fasciculatus_F_contig15121:583..7001622927993.7144895-CDS-E-fasciculatus_F_contig15121:583..700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 584..700 +
1695995781.2417297-CDS-E-fasciculatus_F_contig15121:583..7001695995781.2417297-CDS-E-fasciculatus_F_contig15121:583..700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 584..700 +
1622927993.7270222-CDS-E-fasciculatus_F_contig15121:1119..12321622927993.7270222-CDS-E-fasciculatus_F_contig15121:1119..1232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 1120..1232 +
1695995781.2498379-CDS-E-fasciculatus_F_contig15121:1119..12321695995781.2498379-CDS-E-fasciculatus_F_contig15121:1119..1232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 1120..1232 +
1622927993.7423398-CDS-E-fasciculatus_F_contig15121:1919..20191622927993.7423398-CDS-E-fasciculatus_F_contig15121:1919..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 1920..2019 +
1695995781.2579-CDS-E-fasciculatus_F_contig15121:1919..20191695995781.2579-CDS-E-fasciculatus_F_contig15121:1919..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 1920..2019 +
1622927993.7575717-CDS-E-fasciculatus_F_contig15121:2538..26041622927993.7575717-CDS-E-fasciculatus_F_contig15121:2538..2604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 2539..2604 +
1695995781.266172-CDS-E-fasciculatus_F_contig15121:2538..26041695995781.266172-CDS-E-fasciculatus_F_contig15121:2538..2604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15121 2539..2604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15121.3633.1

>prot_E-fasciculatus_F_contig15121.3633.1 ID=prot_E-fasciculatus_F_contig15121.3633.1|Name=mRNA_E-fasciculatus_F_contig15121.3633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=177bp
GGQGAGEFDGGSNPTSQVLFTFPLVPDVELLVMQEDVDFVQRIVVGTRLA
ALLPQDILETFRDKSTAGPRGKEVTKDAFDTGMQELVRLQSMLEDERDLL
SFALANIFFAYDRTQEGRVLLRDLACGLSFLCCGSKSSKLAFAYSLFGGG
GRSPQEGGAGGRQQHATIRDGTGASAD
back to top

mRNA from alignment at E-fasciculatus_F_contig15121:2..2604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15121.3633.1 ID=mRNA_E-fasciculatus_F_contig15121.3633.1|Name=mRNA_E-fasciculatus_F_contig15121.3633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2603bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15121:2..2604+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCAGGGCGCGGGGGAGTTCGACGGGGGTTCGAACCCTACGAGCCA
GGTGCTGTTCACGTTCCCGCTTGTGCCGGACGTGGAGCTGCTGGTGATGC
AGGAGGACGTGGACTTCGTCCAGAGGATTGTCGTGGTGAGGGGACGAGAG
GACGGGGTAGGGTAGGGTGGGGTAGTGCGTGGTGTTGTGTGTTGTGAGTT
CTCCTGGTGCTGGTCGCTTTCGCGATGATGGGCGTGGGGGATGGATATTA
AAGCGTGTGATGGTTATTTGGAGTAGTCGGGTTGGTTTATGCTGCGTGTG
CTCGTGGTTGTGCGCGTCGCTGGCTGGCTGCGTTGATGACCTCAAGCCCA
CAGCCGAATGTAGTCGAAAGCCTACTACCAGTAGAGTACACCAAGAGGCA
TCTCCTCCGTTGATGGTCTGTCTCATCACACGAAAAGCACCTCGATTCGT
TGTTGTTTTTTTACTCCATCCCTTCTGCGTTTGTCCGGCACGCCTTTATG
GCGTCCTCTTGTGGTACAACACTCTTCCTGTTTTTTTTTTGTTAAGTTCT
TATACTTTTGCTTTGCGCTTGCTGCCATACAGGGGACGCGCCTGGCCGCG
CTTCTACCGCAGGACATCCTGGAGACGTTTCGAGATAAGTCCACTGCCGG
CCCGAGGGGGAAGGAGGTGACAAAGGACGCTTTCGACACGGGGATGCAGG
TCAGCAAAGCGAGCAGAACTAAACATGTGGTAGCGGCTTAACGCTTGTGG
TGACGGTGGTGTTTGTTTTCCTGATCCGACGAGGTGATCCGACAGAAAGA
TAGGAAACGAGCCAAAAACGAGGAGCGCACCTTGGGTGCGTGACAGATGT
GCGTGGCTGATGCGCTGGCCTTTTCCGCCGCGGTGCGCAACGCGAGCTCA
CAGAGATGTTTTGGCTTAACGCCGTTCGTGATGGTGATGGTGTGTGTGTG
GGTGCCGTTGGGTTGTCGATACCGGCCACGTCGAGGGGTCGTTCGTCGTG
TCTCGCTCGTCTACGTTTGTGTGGGTGTGTTCTTTTATTTTTTTTTGTAT
CGACCGCACTATTTAACCAGCTGACATTGTACGTGTGTGTACACGTTTGT
TTGTGTCTGTTCGGGCAGGAACTGGTGCGATTGCAGAGCATGCTCGAGGA
CGAGCGTGACCTGCTGTCGTTCGCGCTGGCGAACATCTTCTTCGCCTACG
ACCGGACGCAGGAGGGCAGGGTCTTACTCAGGTGAGTTAACAAGCAATGC
CTTGTCTTTTTGTGGCGTGTGAGGAGAAAAGGAGAGAGAGGGGACGGGGG
GAGGATGCGCTGTTTTCGATGGAATACGTCGAACACTCCGGGCTCTCTGT
GGTACCGTGGATGCCCTCATGGTTCGCCCCCATGTTTGGTGCTCTTGGAG
GTGCTGGGCAAAGCGGTGTAGGCTGCTGCGTCTACCATGTATGGCGTGAT
GTGCGAGAGTAAAACCCACACACACACTCCCCCACGCGCCAGAGGGGTTT
GGCCTGTCGATCAAAGCAGGGGGGTTTAGTCGAGCAACATGTCTGCTTTG
ACAAGAAAACTAACTCAACCGCTAGCGATGGCAAGCTTGATGGCATGTTC
GATGCCGCTGTCGTCCTCATTCTGAGAGTACGGCATACTCGACAAGTCGA
GTGCAAGTATGTGGCATGTAGTGATGCCGACGGTAGCTTCTCCACTACCT
GCTGCTGTGTGTGGTGTGCGCTTTTTCTCCACGCCGTGCTTGCTGGTTCT
GATTTGGCTCAAGGCTGCACCTTACGAAGACAACAACCTTTTGGGATCTA
CTACCCCCCTTCCCCCAATCGCGTTTTGTGCGTGTCACGCACAACACACG
ACAACAACAACCCGTCCACGACTGATGTCAACAACCGAACGAACGAACGA
ACGAACGAATGACGACAGGGACCTGGCGTGCGGCTTGTCCTTCCTGTGCT
GCGGATCAAAGTCGTCGAAGCTAGCGTTTGCCTACTCGCTCTTCGGGGGC
GGCGGTCGATCACCACAGGTAGCTATGCTACAAGGAGGCTTGTTTTCTTT
CATTATCTACTTGTTCTCGTCGTTGCTGTTGTTTCAAACCAGACAGACAG
ACAGCTAGCCAGCAACCCGCTTCAGGTCTTGTTTCGTCCGTCTGCTGCTG
ACGTGTCTATCAGCCTTGCGTTCTCGTCGTCCTATCCTAGTACTAGTATG
CCAGCCGTGGCGTTTGCGTTTGTCGTGACGATCGCCATCGCCATCGCCAA
TGAAAACCATCGATCGCGGTCTTGCGTGTCCCGTACCACCACGCAGCAGC
GTCTTCCCTTTTCTCCGTGTTCCCGGAGAGTCATCCATTTACTTTTGATG
GTTTCTGGACGTTCGTTGATCACCCCGGTTTCCTCGTGCCCTCTTCCACT
TTCACTCGAACAAGTGCACCATCCCTGTGCGTGCCCTTTGCGCTTGGCTT
TGACTGTTGATCCGCTTTCACCCAACAAACGCACCGATGTAATACGTGCG
CGCTTGCCGTTGGCTGCTGTTGCCCCTACTGCTATAGGAGGGAGGAGCAG
GAGGAAGACAGCAGCACGCCACCATTAGAGACGGGACAGGGGCGTCGGCG
GAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15121:2..2604+

>mRNA_E-fasciculatus_F_contig15121.3633.1 ID=mRNA_E-fasciculatus_F_contig15121.3633.1|Name=mRNA_E-fasciculatus_F_contig15121.3633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15121:2..2604+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCAGGGCGCGGGGGAGTTCGACGGGGGTTCGAACCCTACGAGCCA
GGTGCTGTTCACGTTCCCGCTTGTGCCGGACGTGGAGCTGCTGGTGATGC
AGGAGGACGTGGACTTCGTCCAGAGGATTGTCGTGGGGGGGCAGGGCGCG
GGGGAGTTCGACGGGGGTTCGAACCCTACGAGCCAGGTGCTGTTCACGTT
CCCGCTTGTGCCGGACGTGGAGCTGCTGGTGATGCAGGAGGACGTGGACT
TCGTCCAGAGGATTGTCGTGGGGACGCGCCTGGCCGCGCTTCTACCGCAG
GACATCCTGGAGACGTTTCGAGATAAGTCCACTGCCGGCCCGAGGGGGAA
GGAGGTGACAAAGGACGCTTTCGACACGGGGATGCAGGGGACGCGCCTGG
CCGCGCTTCTACCGCAGGACATCCTGGAGACGTTTCGAGATAAGTCCACT
GCCGGCCCGAGGGGGAAGGAGGTGACAAAGGACGCTTTCGACACGGGGAT
GCAGGAACTGGTGCGATTGCAGAGCATGCTCGAGGACGAGCGTGACCTGC
TGTCGTTCGCGCTGGCGAACATCTTCTTCGCCTACGACCGGACGCAGGAG
GGCAGGGTCTTACTCAGGAACTGGTGCGATTGCAGAGCATGCTCGAGGAC
GAGCGTGACCTGCTGTCGTTCGCGCTGGCGAACATCTTCTTCGCCTACGA
CCGGACGCAGGAGGGCAGGGTCTTACTCAGGGACCTGGCGTGCGGCTTGT
CCTTCCTGTGCTGCGGATCAAAGTCGTCGAAGCTAGCGTTTGCCTACTCG
CTCTTCGGGGGCGGCGGTCGATCACCACAGGGACCTGGCGTGCGGCTTGT
CCTTCCTGTGCTGCGGATCAAAGTCGTCGAAGCTAGCGTTTGCCTACTCG
CTCTTCGGGGGCGGCGGTCGATCACCACAGGAGGGAGGAGCAGGAGGAAG
ACAGCAGCACGCCACCATTAGAGACGGGACAGGGGCGTCGGCGGACGAGG
GAGGAGCAGGAGGAAGACAGCAGCACGCCACCATTAGAGACGGGACAGGG
GCGTCGGCGGAC
back to top