prot_E-fasciculatus_F_contig1511.3625.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1511.3625.1
Unique Nameprot_E-fasciculatus_F_contig1511.3625.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length112
Homology
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.610e-72
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIPDAAEGES 111
            MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIPDA + ES
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIPDAEDEES 111          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.660e-45
Identity = 70/101 (69.31%), Postives = 88/101 (87.13%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALELLKEGLRDLRDLCNILEERVE 100
            M+VNEHRP  AD+KF++ EG++ +SATF+FGDEDHTLGNALRHVLMQ  E DFCGYSVPHPSEPKMNLRLQT  G PA+++LK GL+DL  +C+IL+E+++
Sbjct:    1 MSVNEHRPKPADLKFEILEGATTTSATFVFGDEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD 101          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK)

HSP 1 Score: 139 bits (350), Expect = 2.240e-40
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNIL 95
            MAVNEHR   A+ +F V EGS+  SATF+FG+EDHTLGNALRHVLMQ KE DFCGYSVPHP+EPKMN+RLQT G  AL +L+ GL DL  +C++L
Sbjct:   28 MAVNEHRTMPAEERFAVLEGSTSHSATFVFGNEDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.470e-38
Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALELLKEGLRDLRDLCNILEERVEREIPDAAEGES 111
            M+VNEHRP  A+ KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT+  +PAL++LK+GL ++ ++C++ +  ++R I D  E ++
Sbjct:    1 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYDEQQA 112          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: W7TJI2_9STRA (Dna-directed rna polymerases i and iii subunit rpac2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 7.200e-38
Identity = 63/112 (56.25%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALELLKEGLRDLRDLCNILEERVEREIPDAAEGES 111
            M+VNEHRP  A+ KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT+  +PAL++LK+GL ++ ++C++ +  ++R I D  E ++
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.620e-37
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSS---LSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGR--PALELLKEGLRDLRDLCNILEE 97
            MAVNE R   AD+ F+V E +    + + TF+FGDE HTLGNALRHVLM+ KE  FCGYS+PHPSEPKMN+RLQTT +  PA++LLK GL+DL D+C++++E
Sbjct:    1 MAVNEQRLATADVAFEVLEAADETDVGNRTFVFGDEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDE 102          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A7S2UY40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY40_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.530e-37
Identity = 61/106 (57.55%), Postives = 80/106 (75.47%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALELLKEGLRDLRDLCNILEERVEREIPD 105
            MAVNEH+   ADI+FQ  +GS++ S TF FGDEDHTLGNALRHVLMQ  + + CGYSVPHP+EP M++RLQT  G  A E+LK+GL DL  +C+ L ++ ++ + D
Sbjct:    1 MAVNEHKTLPADIRFQKLQGSTIDSCTFSFGDEDHTLGNALRHVLMQQAKTELCGYSVPHPTEPYMHVRLQTIQGSDATEVLKDGLNDLAKICDTLTDKFDKALND 106          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.260e-34
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQV---KEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRP--ALELLKEGLRDLRDLCNILEE 97
            M+VNEHR    ++ FQ+    +     + TFIFG+EDHTLGNALRHVLMQ +E  FCGYS+PHPSEPKMNLRLQT  +   A++LLK GL+DL ++C++++E
Sbjct:    1 MSVNEHRTPQEEVDFQILNSPDDKDPGNRTFIFGNEDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDE 102          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A7S0XDL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.840e-31
Identity = 59/108 (54.63%), Postives = 81/108 (75.00%), Query Frame = 0
Query:    1 MAVNEHR-PTVADIK-FQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGR-PALELLKEGLRDLRDLCNILEERVEREIPD 105
            M+VN+HR P  ++ + F++K G++  SATFIFG+EDHTLGN+LR+VL Q  EVDF GYSVPHP EPK+N+RLQT     A+ +LK+GL+DL +  NIL++   + I D
Sbjct:    1 MSVNDHRIPLASNTELFEIKPGNNNKSATFIFGNEDHTLGNSLRYVLSQRNEVDFVGYSVPHPYEPKLNIRLQTKENYTAVNVLKDGLKDLEETANILDDVFIQSIKD 108          
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Match: A0A7S2WKX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.130e-30
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = 0
Query:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALELLKEGLRDLRDLCNILEERVEREIPD 105
            MAVNE     A+ + QVK G S   ATFI GD+DHTLGNALRHVLMQ +  +FCGYS+PHPSEP ++LRLQT  G  A E LK GL++L   C+ +E   +R   D
Sbjct:    1 MAVNEVTAKTAEHRLQVKLGESEDCATFILGDQDHTLGNALRHVLMQTRGTEFCGYSIPHPSEPYVHLRLQTQDGTSAAEKLKAGLKELSVSCDHIEAAFDRAFDD 106          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1511.3625.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ6_ECTSI2.610e-7297.30RNA_pol_L_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YNA2_9STRA1.660e-4569.31RNA polymerase Rpb3/Rpb11 dimerization domain-cont... [more]
A0A7S4DHT9_HETAK2.240e-4068.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D350_9STRA3.470e-3856.25RNA_pol_L_2 domain-containing protein n=1 Tax=Nann... [more]
W7TJI2_9STRA7.200e-3856.25Dna-directed rna polymerases i and iii subunit rpa... [more]
A0A7R9U1D2_9STRA1.620e-3760.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2UY40_9STRA8.530e-3757.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TTH9_9STRA1.260e-3456.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0XDL5_9STRA3.840e-3154.63Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2WKX3_9STRA1.130e-3055.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 16..105
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 16..105
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 10..105
e-value: 2.8E-33
score: 115.4
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 20..104
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 26..98
e-value: 3.5E-31
score: 106.8
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 30..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1511contigE-fasciculatus_F_contig1511:11816..14477 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1511.3625.1mRNA_E-fasciculatus_F_contig1511.3625.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1511 11816..15369 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1511.3625.1 ID=prot_E-fasciculatus_F_contig1511.3625.1|Name=mRNA_E-fasciculatus_F_contig1511.3625.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKE
VDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVE
REIPDAAEGES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR009025RBP11-like_dimer
IPR036603RBP11-like