mRNA_E-fasciculatus_F_contig15100.3618.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15100.3618.1
Unique NamemRNA_E-fasciculatus_F_contig15100.3618.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15100.3618.1 vs. uniprot
Match: A0A6H5L288_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 4.680e-70
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 MCKGAEKTALVAAVAAMAWGGWMAGQHPHKLGWGVIMAVIGGIIGNWFSALNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISG 333
            MCKGAEKTALVAAVAAMAWG WMAGQHPHKLGWG+IMAV+GGIIGNWFS LNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISG
Sbjct:  143 MCKGAEKTALVAAVAAMAWGSWMAGQHPHKLGWGIIMAVMGGIIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISG 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15100.3618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L288_9PHAE4.680e-7096.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15100contigE-fasciculatus_F_contig15100:950..2946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006830.1
Exons3
Model size348
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15100.3618.1prot_E-fasciculatus_F_contig15100.3618.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15100 950..2946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.3602664-CDS-E-fasciculatus_F_contig15100:949..11181622927991.3602664-CDS-E-fasciculatus_F_contig15100:949..1118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15100 950..1118 -
1695995780.6514182-CDS-E-fasciculatus_F_contig15100:949..11181695995780.6514182-CDS-E-fasciculatus_F_contig15100:949..1118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15100 950..1118 -
1622927991.3718562-CDS-E-fasciculatus_F_contig15100:1870..19281622927991.3718562-CDS-E-fasciculatus_F_contig15100:1870..1928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15100 1871..1928 -
1695995780.6622741-CDS-E-fasciculatus_F_contig15100:1870..19281695995780.6622741-CDS-E-fasciculatus_F_contig15100:1870..1928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15100 1871..1928 -
1622927991.3848128-CDS-E-fasciculatus_F_contig15100:2825..29461622927991.3848128-CDS-E-fasciculatus_F_contig15100:2825..2946Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15100 2826..2946 -
1695995780.6724808-CDS-E-fasciculatus_F_contig15100:2825..29461695995780.6724808-CDS-E-fasciculatus_F_contig15100:2825..2946Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15100 2826..2946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15100.3618.1

>prot_E-fasciculatus_F_contig15100.3618.1 ID=prot_E-fasciculatus_F_contig15100.3618.1|Name=mRNA_E-fasciculatus_F_contig15100.3618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
MCKGAEKTALVAAVAAMAWGGWMAGQHPHKLGWGVIMAVIGGIIGNWFSA
LNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVA
LVAQGFGTISGEMERV
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mRNA from alignment at E-fasciculatus_F_contig15100:950..2946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15100.3618.1 ID=mRNA_E-fasciculatus_F_contig15100.3618.1|Name=mRNA_E-fasciculatus_F_contig15100.3618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1997bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15100:950..2946- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCAAGGGGGCGGAGAAGACGGCGCTGGTGGCGGCGGTGGCGGCCAT
GGCGTGGGGCGGCTGGATGGCAGGCCAGCACCCACACAAGCTCGGCTGGG
GGGTCATCATGGCCGTCATAGGTGAGCGCGCGAAGAAAAAACACGCGCGG
GTGCCACAGATTCATGTTTTTTATCAAGAGGAAAAAACGCCTTTTTCTTG
TTCTTGTCGCGGTAAGGGATCCTCGTATCACCGCTACCTGCCGCTTTCCC
GGTGCATCCTTTGGTGCTGTCTTCCTCAACTGAAGAGTCCCAATCCGGGG
CCATGTGAACTTAGTTCTGCGACTCATGCCTCCATCTTCTAACGAGATAC
AGGCTTTCCTTCTGTGGACTCCGAATCGCCAGTCATGCAGTCATTGATCA
CGAAACTGGTGTGGTATTCATCAGTGTTGCCGATATATTTTGTAGCAGTT
TCTCTGTCAAAGCCCTGTTGATCATGAACGGTAGCCGCCATCAGCCGAAC
GGTTCTGGCGTAGTGCCGCCAGTTGATATCTCATCCAAGTTGGGAGGTTT
CATGCAGTCATTGATGTGGAACGGAAGGCTACCGCACAGCTTTGGGCACA
TGCAGCGTGTGCTCCGACTGACAAATGTGGCAACTTCATACCAATTGTGT
GCTGCGTGTTGGTTAAGGTTTTATGTTTTTCAAGATCGTTTCCAGTCCTT
CTGCATATACTGAAGGAAATCGAACGATTTTAGATTCGATCGCCAAAACA
GCTGTTGGGTCTCGACATTTTTCATTCCTCAAAACGAGGTGGCGCAAACG
TTCCATCGGGACCCCCGAGTTGTTGAGGAGGTGAAAAACACGGGTGTAAT
GCCGGACATCCCCTGCCTAAGATCAAGGAAGATGGGGCGCGAATTCTCCC
ACATCGCCCTCCAGGTAGATTTTCGCCTGACGGAAAAAGCGATGTCGATT
GCCAACTGGTCTGCTTCCCTGTCTGCGTTCCGCCTCTCCGCTGTGTCACT
GCCTTCGTCTTTCTCAAGGTGGAATAATCGGCAACTGGTTCTCGGCCTTA
AACGGAGGGGCCGAAGGACGAATTGTGTGAGTGAGACAACCCGTTCGCAG
ACACATACACACCAATTCGATTCGATTTTCAGGGCGAACCTCACAACGAT
GGCTTCGCACGGGTCGCTCTTCTTTTGGCACCTCAACGCCACCACAACAC
AGCTCGGGCGTGGTACGGAATGCTGTCAATTTTCGAAGGGTAGGCTCTCC
ATCGGATGTTGACCAACTCGCGCACGGTCGTGAAGTGGGCCAAGAAAGAA
GCCACTCTTGACGAGGGAGACGGCACCCACCCTTTCGCCCTCCTCCCTTC
TCATGCACATGCACGCGCGAGAGAAAGAGCGGGTGTCTCTCAAGGGTTGT
GGCGTGCTACAATCGCAATCGCGTGCCCAACGATGCGCTGGGTGTGCAAA
ACCATCATCGAAAATAGACGGGCGATGAGACGGTAGTGCTACCCGTACGT
TGTTTCGTTTTCATAGTCGCTGCTGCGGATGTGGTGTGAGCGCTTTAGGC
TGCGCCTTGACGCCCGGCAATATTCGTTATCCGCAACTGGAGCAGCCCTC
GGAAAACGAAACCGAACACAGAGCAGTGTTTTAGTGCTCTTCTCAGGGGT
CCAATGTTCCGCGACCACGGCTTGGATGTTCCTTTTCTTAGACAAGTGAT
GTGATCAAGAAAGCGACGGCAATGTTGACCATCCGGGTAGACCTGCTCCA
GCGAGCTTATGCAGGCCATTGCCGTCAACAGCAACACGCGTTCACACACA
ACACACCACACGTGTACGTATCATGCAGCTGGGGAGACTGGCGGTGCAAC
GCTCTGTCATTCGCCGGGGTGATCACCGCCGGTCGGTACGCCGCGAGCCT
GGAGCCGGAGGAACGAGAGGCGACGTTAGAGAGCGCGTTCTTCGTTGCTC
TGGTCGCCCAAGGCTTCGGGACAATTTCGGGTGAGATGGAGAGAGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15100:950..2946-

>mRNA_E-fasciculatus_F_contig15100.3618.1 ID=mRNA_E-fasciculatus_F_contig15100.3618.1|Name=mRNA_E-fasciculatus_F_contig15100.3618.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15100:950..2946- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCAAGGGGGCGGAGAAGACGGCGCTGGTGGCGGCGGTGGCGGCCAT
GGCGTGGGGCGGCTGGATGGCAGGCCAGCACCCACACAAGCTCGGCTGGG
GGGTCATCATGGCCGTCATAGATGTGCAAGGGGGCGGAGAAGACGGCGCT
GGTGGCGGCGGTGGCGGCCATGGCGTGGGGCGGCTGGATGGCAGGCCAGC
ACCCACACAAGCTCGGCTGGGGGGTCATCATGGCCGTCATAGGTGGAATA
ATCGGCAACTGGTTCTCGGCCTTAAACGGAGGGGCCGAAGGACGAATTGT
GTGGAATAATCGGCAACTGGTTCTCGGCCTTAAACGGAGGGGCCGAAGGA
CGAATTGTCTGGGGAGACTGGCGGTGCAACGCTCTGTCATTCGCCGGGGT
GATCACCGCCGGTCGGTACGCCGCGAGCCTGGAGCCGGAGGAACGAGAGG
CGACGTTAGAGAGCGCGTTCTTCGTTGCTCTGGTCGCCCAAGGCTTCGGG
ACAATTTCGGGTGAGATGGAGAGAGTGCTGGGGAGACTGGCGGTGCAACG
CTCTGTCATTCGCCGGGGTGATCACCGCCGGTCGGTACGCCGCGAGCCTG
GAGCCGGAGGAACGAGAGGCGACGTTAGAGAGCGCGTTCTTCGTTGCTCT
GGTCGCCCAAGGCTTCGGGACAATTTCGGGTGAGATGGAGAGAGTG
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