mRNA_E-fasciculatus_F_contig15084.3607.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15084.3607.1
Unique NamemRNA_E-fasciculatus_F_contig15084.3607.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15084.3607.1 vs. uniprot
Match: D7G7P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 1.490e-98
Identity = 155/174 (89.08%), Postives = 166/174 (95.40%), Query Frame = 1 
Query:    1 MQVSNAGDLNGDYASSLSADGSVTTYVSTGINAATIASSDAPAQCADSTASDCTVNRWQLTPSDAESTLPTYVVYDEALHPSTIDEVWLRLDNCGSGGCQSSPAELTILCGDGTTAAGSGTPAPVSVTASDCVIIEVAGTSGAASDGFYYDDGSDLGDGVTQFGGYDDVNGELT 522
            MQVSNAGDLNGDYASSL+ DGSVT YVSTG+ AAT+ASSDAPAQCADS+ASDCTVNRWQ+TPSDA+STLPTYVVYDEALHPSTI+EVWLRLDNCG+GGCQSSPAELTI+CGDGTTAAGSGTPAPVSVTASDC  IEVAGTSGA SDGFYYDDGS+LGDGVTQ+ GYD VNGELT
Sbjct:    1 MQVSNAGDLNGDYASSLNGDGSVT-YVSTGVIAATLASSDAPAQCADSSASDCTVNRWQITPSDADSTLPTYVVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTIVCGDGTTAAGSGTPAPVSVTASDCEAIEVAGTSGAESDGFYYDDGSELGDGVTQYVGYDVVNGELT 173
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BLAST of mRNA_E-fasciculatus_F_contig15084.3607.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 3.770e-88
Identity = 146/173 (84.39%), Postives = 158/173 (91.33%), Query Frame = 1 
Query:    1 MQVSNAGDLNGDYASSLSADGSVTTYVSTGINAATIASSDAPAQCADSTASDCTVNRWQLTPSDAESTLPTYVVYDEALHPSTIDEVWLRLDNCGSGGCQSSPAELTILCGDGTTAAGSGTPAPVSVTASDCVIIEVAGTSGAASDGFYYDDGSDLGDGVTQFGGYDDVNGEL 519
            + VSNAGDLNGDYASSL+ DGSV  YVSTG+ AATI+SS APAQCADSTASDC VNRWQ+ P DA+STLPTY VYDEALHPSTI+EVWLRLDNCG+GGCQSSPAELTILCGDGTTA+GSGTPAP SVTASDC +IEVAGTSGA SDGFYYDDGS+LGD VTQ+GGYD VNGEL
Sbjct:  278 VTVSNAGDLNGDYASSLNGDGSVM-YVSTGVIAATISSSAAPAQCADSTASDCNVNRWQIAPLDADSTLPTYWVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTILCGDGTTASGSGTPAPASVTASDCGVIEVAGTSGAESDGFYYDDGSELGDDVTQYGGYDVVNGEL 449
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15084.3607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7P1_ECTSI1.490e-9889.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTK7_9PHAE3.770e-8884.39F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15084contigE-fasciculatus_F_contig15084:91..2044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_010400.1
Exons3
Model size522
Cds size522
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15084.3607.1prot_E-fasciculatus_F_contig15084.3607.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15084 91..2044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927987.4115756-CDS-E-fasciculatus_F_contig15084:90..3431622927987.4115756-CDS-E-fasciculatus_F_contig15084:90..343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15084 91..343 -
1695995779.527654-CDS-E-fasciculatus_F_contig15084:90..3431695995779.527654-CDS-E-fasciculatus_F_contig15084:90..343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15084 91..343 -
1622927987.4266174-CDS-E-fasciculatus_F_contig15084:944..11181622927987.4266174-CDS-E-fasciculatus_F_contig15084:944..1118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15084 945..1118 -
1695995779.5380526-CDS-E-fasciculatus_F_contig15084:944..11181695995779.5380526-CDS-E-fasciculatus_F_contig15084:944..1118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15084 945..1118 -
1622927987.4376519-CDS-E-fasciculatus_F_contig15084:1949..20441622927987.4376519-CDS-E-fasciculatus_F_contig15084:1949..2044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15084 1950..2044 -
1695995779.548004-CDS-E-fasciculatus_F_contig15084:1949..20441695995779.548004-CDS-E-fasciculatus_F_contig15084:1949..2044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15084 1950..2044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15084.3607.1

>prot_E-fasciculatus_F_contig15084.3607.1 ID=prot_E-fasciculatus_F_contig15084.3607.1|Name=mRNA_E-fasciculatus_F_contig15084.3607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp
MQVSNAGDLNGDYASSLSADGSVTTYVSTGINAATIASSDAPAQCADSTA
SDCTVNRWQLTPSDAESTLPTYVVYDEALHPSTIDEVWLRLDNCGSGGCQ
SSPAELTILCGDGTTAAGSGTPAPVSVTASDCVIIEVAGTSGAASDGFYY
DDGSDLGDGVTQFGGYDDVNGELT
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mRNA from alignment at E-fasciculatus_F_contig15084:91..2044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15084.3607.1 ID=mRNA_E-fasciculatus_F_contig15084.3607.1|Name=mRNA_E-fasciculatus_F_contig15084.3607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15084:91..2044- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGTGAGCAATGCCGGCGACCTGAACGGGGACTACGCCTCGTCGCT
CAGTGCTGACGGCAGCGTGACGACGTATGTCTCAACGGGAATCAAGTGAG
CTATGCATAGCTGCGGGTTGAGGGTAGTAGCCAAAGGTCGCGTCATTGAC
TGCGTACCTATGAGCCTATGGCGCGAAAGAAGTGTTCTGTAAGCACGGAG
CTGTAAGAACGAGAGCTGTACCTATGGCGCGGAAGAAGTACTGCTGAATG
TTGCATAGAGCTTGAAAGGTGGGAGCGTGAACCAGTACTAGCAGGAGCTA
TCACTGTCTTCCTTATCGTCGCCATGCCCTTTGCGCACGTGATTTGCGTC
TTGCGGGCCGGCCTTGCCTGTAGTGGTGTCCAGGTTTCATGTCCTCGAAA
TCAGGCGGCTTGATTTGCGGGTACCTTGTAGTATTGCTCTCTCTTCTTCG
CCATCTGTTGTGAGCAAGCGCATGTACTCACACCGTGCAGCAGTGCCTCG
TCCGGCGGCGGAGTTATGGCTTTCTCGTTGAACACCTGCTTGTTTTGTCG
TTGTTGACGCCCTGTATGATTCATGAGCCTGTCCGTGCTTTCTGCAATCA
CCGTCGTAGTCGTGTTTGTAGCATTGAGACGGGACGGTTATGTCAGCCCT
CCCTCCCTCCCTCTAGGGCTTTCACCTTGTGTCTCCATTTTCACAAAAGG
TGATACGCCTCAGGAGTTGTCGTTGTGAGCGCTGTTGTCGAGGCTTGACA
AGACTATGGCGGCGTGGTACCGATCATCTCTCACAATGCTGATGCTCCCT
CCATCCCTCCCGTTCCTGCTACTGGCTGATGCACCCTACCCTTGCTCGAT
CGGTACGAATACCGCCAACTCTCTTTTTTCCACGGCGAAAAAACACGCCA
CGCCACCGCCGACCTTCATGCACCAGCGCCGCGACGATAGCTTCTTCGGA
CGCCCCGGCACAATGCGCCGACAGCACCGCTTCAGACTGCACCGTGAACA
GGTGGCAGCTCACGCCGTCGGATGCTGAGTCGACGCTACCCACCTACGTG
GTGTACGATGAAGCGCTTCATCCCTCGACTATCGACGAGGTTTGGCTAAG
GTGCGCCCCCCCCCGCCGCCGCTGGTTGATGTCCCGGAGTTGGTCTTAGC
AAACATGCACGTAACACTTGTATGCGGTCTCTCTCTCTCTCTCTCTCCTC
TCTCGCCTACTTGTTACTGCCTGTCAACACGACGAAGAAGGACGGGCTCA
GACACCATACCATACCATACCATACCATACCATACCATCGCTGTGCACCC
TTGTTGGTCTATCCGTCGACTTCCGCTCGAAACCAACGGTACCTTTGCGG
CAGTTCAGCAGCACTTGGGGGTGGCACGACGGCGGTATCTCGATGCTTTG
GCCCGAAACCTTCCTCGTACCGTACCGTGCAGAATAACGCCCCTCTCTCC
ACGGACCAGGAACTCGTACATACCCGGTGCTGTAGACGCTCGGATTAGAC
GGACAAACGAAACGCCACACCTCGCATTGGGGTATTTTTCCGCACAACAA
AAATAGGCATCTTTTTTTTTCTTCTAGGCTGAGACTCTCGTCTGGTACTT
GTCCAGGCGCGTCCATATGCTGCATATCGACGCTGCCGCATCACTCAAGA
ACACAACCCCCGCACACACACACACACACACACACCCACACACACACGCA
GGCTTGACAACTGCGGCAGCGGCGGGTGCCAGAGCAGCCCCGCGGAGCTC
ACCATCCTGTGCGGCGACGGCACGACTGCGGCGGGGTCGGGGACTCCGGC
GCCGGTGTCGGTCACCGCCTCCGACTGCGTAATTATCGAGGTCGCGGGGA
CCTCGGGGGCGGCGAGCGACGGGTTCTACTACGACGACGGCAGTGACCTC
GGGGACGGCGTGACGCAGTTCGGGGGCTATGACGACGTCAATGGCGAGCT
GACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15084:91..2044-

>mRNA_E-fasciculatus_F_contig15084.3607.1 ID=mRNA_E-fasciculatus_F_contig15084.3607.1|Name=mRNA_E-fasciculatus_F_contig15084.3607.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15084:91..2044- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGTGAGCAATGCCGGCGACCTGAACGGGGACTACGCCTCGTCGCT
CAGTGCTGACGGCAGCGTGACGACGTATGTCTCAACGGGAATCAAATGCA
GGTGAGCAATGCCGGCGACCTGAACGGGGACTACGCCTCGTCGCTCAGTG
CTGACGGCAGCGTGACGACGTATGTCTCAACGGGAATCAACGCCGCGACG
ATAGCTTCTTCGGACGCCCCGGCACAATGCGCCGACAGCACCGCTTCAGA
CTGCACCGTGAACAGGTGGCAGCTCACGCCGTCGGATGCTGAGTCGACGC
TACCCACCTACGTGGTGTACGATGAAGCGCTTCATCCCTCGACTATCGAC
GAGGTTTGGCTAAGCGCCGCGACGATAGCTTCTTCGGACGCCCCGGCACA
ATGCGCCGACAGCACCGCTTCAGACTGCACCGTGAACAGGTGGCAGCTCA
CGCCGTCGGATGCTGAGTCGACGCTACCCACCTACGTGGTGTACGATGAA
GCGCTTCATCCCTCGACTATCGACGAGGTTTGGCTAAGGCTTGACAACTG
CGGCAGCGGCGGGTGCCAGAGCAGCCCCGCGGAGCTCACCATCCTGTGCG
GCGACGGCACGACTGCGGCGGGGTCGGGGACTCCGGCGCCGGTGTCGGTC
ACCGCCTCCGACTGCGTAATTATCGAGGTCGCGGGGACCTCGGGGGCGGC
GAGCGACGGGTTCTACTACGACGACGGCAGTGACCTCGGGGACGGCGTGA
CGCAGTTCGGGGGCTATGACGACGTCAATGGCGAGCTGACGGCTTGACAA
CTGCGGCAGCGGCGGGTGCCAGAGCAGCCCCGCGGAGCTCACCATCCTGT
GCGGCGACGGCACGACTGCGGCGGGGTCGGGGACTCCGGCGCCGGTGTCG
GTCACCGCCTCCGACTGCGTAATTATCGAGGTCGCGGGGACCTCGGGGGC
GGCGAGCGACGGGTTCTACTACGACGACGGCAGTGACCTCGGGGACGGCG
TGACGCAGTTCGGGGGCTATGACGACGTCAATGGCGAGCTGACG
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