mRNA_E-fasciculatus_F_contig15076.3599.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15076.3599.1
Unique NamemRNA_E-fasciculatus_F_contig15076.3599.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15076.3599.1 vs. uniprot
Match: D8LKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 7.710e-16
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   22 RTWLSRHRRSPATRTNRFLRRGGALEERTPSAGAGGALRALLAAGRTEGQEE----------VGVCAGSAPDDRAGGPGAGKPE 243
            R W++   R P T+ NR+L RGGAL ERTPSAG G ALRALLAAGRTE               GVCAGSAPDD+AG PG GKPE
Sbjct:  418 RKWVAT--RLPGTQANRYLHRGGALAERTPSAGEG-ALRALLAAGRTEXXXXXXXXXXXXXXAGVCAGSAPDDQAGDPGGGKPE 498
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15076.3599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH2_ECTSI7.710e-1660.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15076contigE-fasciculatus_F_contig15076:1260..2730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size278
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15076.3599.1prot_E-fasciculatus_F_contig15076.3599.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15076 1260..2730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927986.8191082-CDS-E-fasciculatus_F_contig15076:1259..13701622927986.8191082-CDS-E-fasciculatus_F_contig15076:1259..1370Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15076 1260..1370 -
1695995779.2790947-CDS-E-fasciculatus_F_contig15076:1259..13701695995779.2790947-CDS-E-fasciculatus_F_contig15076:1259..1370Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15076 1260..1370 -
1622927986.8359418-CDS-E-fasciculatus_F_contig15076:1953..20741622927986.8359418-CDS-E-fasciculatus_F_contig15076:1953..2074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15076 1954..2074 -
1695995779.2912252-CDS-E-fasciculatus_F_contig15076:1953..20741695995779.2912252-CDS-E-fasciculatus_F_contig15076:1953..2074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15076 1954..2074 -
1622927986.8465014-CDS-E-fasciculatus_F_contig15076:2686..27301622927986.8465014-CDS-E-fasciculatus_F_contig15076:2686..2730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15076 2687..2730 -
1695995779.3028522-CDS-E-fasciculatus_F_contig15076:2686..27301695995779.3028522-CDS-E-fasciculatus_F_contig15076:2686..2730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15076 2687..2730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15076.3599.1

>prot_E-fasciculatus_F_contig15076.3599.1 ID=prot_E-fasciculatus_F_contig15076.3599.1|Name=mRNA_E-fasciculatus_F_contig15076.3599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
MGEGGGARTWLSRHRRSPATRTNRFLRRGGALEERTPSAGAGGALRALLA
AGRTEGQEEVGVCAGSAPDDRAGGPGAGKPEEGRLAERLACR
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mRNA from alignment at E-fasciculatus_F_contig15076:1260..2730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15076.3599.1 ID=mRNA_E-fasciculatus_F_contig15076.3599.1|Name=mRNA_E-fasciculatus_F_contig15076.3599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1471bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15076:1260..2730- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGAGGGGGGGGGGGCACGCACGTGGCTCTCACGGCACAGGTGGGT
CTCTCTGCAATGTGGTTCTGTTATTAATGTACGTATGTCTTGAGCGCTTG
AATCATGAAATCTGCCAGACTTTGGTATCTACGGCATTGTCAGTTTTTTG
TGTATTTTTTTGGGGGTGTAAGCTGTGTTTGCGAGTTTGGTGTGGCCCTT
GGCTCGCGTTTGGTAAGAGGAGCGGTTTCATGTGCAAGGTGGCTGACGGA
CTGAAACTGGTTGCTCCGTGCATACGCCGAGCTTGCCACGAATGGCTTCG
TTTTTCTCCGACTCCGCCGAAAGCTAGCTTCCAAACGCAAGCATCGCGCT
CTGCCACTCCGACAAAGAAGACGATTGAGCAGTGTACACACCAATAAGCC
ATTTCACATCTTGTCTCCAAGCGTTAGCGTTCGTAGCGCTATGTTATTTA
GCTGTGCGACGGACAACGATCTCTCTATCGCGTAATGGATAACCCCCTGT
CCCCGTGTGACGAGAATGCCTTCGTCGGGACTACAACCCCTGATCATTTT
TTCGTTTGCTCTTCTAGCACCCTGCCGACCGCCAACGCTGCCGTCCTAAG
CTCGCTTTTTATGGCACGCACCGTCTGTTCGTTTCGTTTGTTGCTGTTGC
TGCCAGGCGCTCGCCCGCAACTCGAACGAATCGCTTCCTCCGACGGGGAG
GGGCTTTGGAAGAGCGAACACCTTCGGCGGGGGCGGGGGGAGCGTTACGG
GCTCTGTTAGCGGCGGGCAGAACGGAGGTGAGACTGCTTGCTGCCCTGGC
ATGTGACATCGTGCGCGGCTGCGACGGAGTTGTGTCGGCAGCGGTGAGCG
ACGAGGGTGGCCGTGTTTTGCCGTGGAAGGGGTGGGCGAGGTGTTCTCGT
GTAAGCGCATGCCGAAGTAGTTCGACCATGGGCCATGGCCGTGGGTGGTG
GTGATGGCGCTCCCCGCTCGAAACGTCGCCACGCCACCGCGTTTCGGGAC
GCGTGTTGACGGCAGGCCAGCGTAGCGGTTCATGGCGTCTCTCCTCCTCT
CCGGTCAATGGCTTTCGCGAGTGTTGGTTTGGACGGGGATGGCATGTGCT
CTGGATCCCTCTCTTTGTCGTACATGCCTTCCCTTCCCCAAGTGTTCTCT
ACTGCCGGGCGCGGAGTTGCCTCGTTGCCCTGCCCTCGCTGGGTGGACGA
CAAGACAAGCACACGAAAGAAAGAAGGATGTTGGACAGAGGCCAGAACGG
TTCTCCAAGCACGGGCAACAACAACAACATCAACAACAGCAGTAACAGCA
TCTCAAAGGTACGCCCGCGCTCCGACCCCTGCGTGTAACTTTATCCCTCT
CTGACCGCAGGGGCAGGAGGAGGTGGGAGTCTGCGCGGGTTCGGCCCCCG
ACGATCGAGCAGGCGGTCCGGGGGCTGGGAAGCCGGAGGAGGGGCGCCTA
GCCGAGCGTCTAGCGTGTCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15076:1260..2730-

>mRNA_E-fasciculatus_F_contig15076.3599.1 ID=mRNA_E-fasciculatus_F_contig15076.3599.1|Name=mRNA_E-fasciculatus_F_contig15076.3599.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15076:1260..2730- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGAGGGGGGGGGGGCACGCACGTGGCTCTCACGGCACAGATGGGG
GAGGGGGGGGGGGCACGCACGTGGCTCTCACGGCACAGGCGCTCGCCCGC
AACTCGAACGAATCGCTTCCTCCGACGGGGAGGGGCTTTGGAAGAGCGAA
CACCTTCGGCGGGGGCGGGGGGAGCGTTACGGGCTCTGTTAGCGGCGGGC
AGAACGGAGGCGCTCGCCCGCAACTCGAACGAATCGCTTCCTCCGACGGG
GAGGGGCTTTGGAAGAGCGAACACCTTCGGCGGGGGCGGGGGGAGCGTTA
CGGGCTCTGTTAGCGGCGGGCAGAACGGAGGGGCAGGAGGAGGTGGGAGT
CTGCGCGGGTTCGGCCCCCGACGATCGAGCAGGCGGTCCGGGGGCTGGGA
AGCCGGAGGAGGGGCGCCTAGCCGAGCGTCTAGCGTGTCGGGGGCAGGAG
GAGGTGGGAGTCTGCGCGGGTTCGGCCCCCGACGATCGAGCAGGCGGTCC
GGGGGCTGGGAAGCCGGAGGAGGGGCGCCTAGCCGAGCGTCTAGCGTGTC
GG
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