prot_E-fasciculatus_F_contig15071.3595.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15071.3595.1
Unique Nameprot_E-fasciculatus_F_contig15071.3595.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length624
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15071.3595.1 vs. uniprot
Match: A0A6H5KCA9_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA9_9PHAE)

HSP 1 Score: 615 bits (1586), Expect = 2.000e-205
Identity = 453/633 (71.56%), Postives = 477/633 (75.36%), Query Frame = 0 
Query:    7 QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTWGYNCAMEACARSGDWGSAVELMDEMRTHGLSHDAFXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESVEGASGNGDGDIGGGVAAVTHSGKSPLSPTAVHCNALLQSYSRGKRMDKALRLLDEMLAVAPVALSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGAESTRLDPVEXXXXXXXXXXXXXXXXXXXXXXXXTEYRRTQGPAESHSRPQPPIDEGXXXXXXXXXXXXXXXXXXXAKTKTYPT-------GKEQPTTDVSV-EGSGDDR---DRSPLLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGTDPFASGGGGGNGDTPLLPPNVHCLTAAITACGRANRLELAIAVLRNAAVSEDAYLDEQMRL-RRQQEDHAREQQSSTASPAAAWEWEVVAGMAEALPTPGRRRXXQNQPPGEDTSPVVDGDTSSTAILRARREEAGAEVAAVGGRSSVGEAATLNGGRLTGGEDAEVTIDGDKSATA---AAWEGRVGETSTAEGRLPAGASLQPAFNAAINACVKAGSHGEARVLIRDMGERGLRPGREAFNSLLVACSSSYE 624
            QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTT              DWGSAVELMDEMRTHGLSHDAF XXXXXXXXXXXXXXXXXXXXX QMADAY ES+E A+G+GD   GG VAA  HSGKSPL PTAVHCNALLQ+YSRGKR+DKALRLLDEMLAVAPV      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  I A  T  DPVE        XXXXXX          T YRRTQG AE H RPQPP+ EG         XXXXXXXXXX               GKE+ T D    EGS D+    D S LLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGT P A GGGGG+GDTPLLPPNVHCLTAAITACGRANRLELA+AVLR AAV EDA+LDEQ+RL RR QED A E+ SSTASPAAAWE                  XX+NQPPGEDTSPV D  TSST I + R   A A +AA GGRS V E A  NGG+L GG+DAE TIDG KSA A   AAW+ R  ETSTAEG LPA +SLQPAFNAAINACVK+GSHGEAR+L+RDMGERGLRPGREAFNSLLV CS+SYE
Sbjct:   55 QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTHGLSHDAFTXXXXXXXXXXXXXXXXXXXXXXQMADAYIESLEVANGSGDDGTGGDVAACAHSGKSPLFPTAVHCNALLQAYSRGKRVDKALRLLDEMLAVAPVP-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIAAGLTEFDPVEDEEAFSSGXXXXXXS---------TSYRRTQGLAEIHYRPQPPLGEGESSPAARSEXXXXXXXXXXXXXXXXXXXXXIAKIGKEESTADGGGGEGSRDNDEGDDWSALLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGTAPIA-GGGGGSGDTPLLPPNVHCLTAAITACGRANRLELAMAVLREAAVLEDAWLDEQVRLSRRLQEDDAHEK-SSTASPAAAWEXXXXXXXXXXXXXXXXXXXXRNQPPGEDTSPVADSGTSSTTISKERGVGADAGIAASGGRSLVNETAMFNGGKLAGGKDAEATIDGVKSAAAGAAAAWDRR--ETSTAEGPLPARSSLQPAFNAAINACVKSGSHGEARLLMRDMGERGLRPGREAFNSLLVVCSTSYE 673
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15071.3595.1 vs. uniprot
Match: D7FK86_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK86_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 1.250e-149
Identity = 372/637 (58.40%), Postives = 386/637 (60.60%), Query Frame = 0 
Query:    7 QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTWGYNCAMEACARSGDWGSAVELMDEMRTHGLSHDAFXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESVEGASGNGDGDIGGGVAAVTHSGK-SPLSPTAVHCNALLQSYSRGKRMDKALRLLDEMLAVAPVALSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGAESTRLDPVEXXXXXXXXXXXXXXXXXXXXXXXXTEYRRTQGPAESHSRPQPPIDEGXXXXXXXXXXXXXXXXXXXAKTKTYPTGKEQPTTDVSVEGSGDDRDRSPLLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGTDPFASGGGGG---------------NGDTPLLPPNVHCLTAAITACGRANRLELAIAVLRNAAVSEDAYLDEQMRLRRQQEDHAREQQSSTASPAAAWEWEVVAGMAEALPTPGRRRXXQNQPPGEDTSPVVDGDTSSTAILRARREEAGAEVAAVGGRSSVGEAATLNGGRLTGGEDAEVTIDGDKSATA---AAWEGRVGETSTAEGRLPAGASLQPAFNAAINACVKAGSHGEARVLIRDMGERGLRPGREAFNSLLVACSSSYE 624
            QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTT              DWGSAVELMDEMRT GLSHDA XXXXXXXXXXXXXXXXXXXXXXEQMADAYTES+EGA+G+GD D GGGV A  HSGK S LSPTAVHCNALLQ+YSRGKR+DKALRLLDEMLAVAP   SSAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      R                                                                                                   S LLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAV LLKVMGEERIGGT P A                     +GDTPLLPPNVHCLTAAITACGRANRLELAIAVLR AAV EDA+LDEQ                                                                       R  EA A +AA GGRSSV E A  N G+L GGEDAE TIDGDKSATA   AAW+G   ETSTAEG L A +SLQPAFNAAINACVKAGSHGEAR+L+RDMGERGLRPGREAFNSLLVACS+SYE
Sbjct:   55 QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTRGLSHDAXXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESLEGANGSGDDDAGGGVFA--HSGKKSSLSPTAVHCNALLQAYSRGKRVDKALRLLDEMLAVAPALPSSATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---------------------------------------------------------------------------------------------------SALLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVCLLKVMGEERIGGTAPIAGXXXXXXXXXXXXXXXXXXXXSGDTPLLPPNVHCLTAAITACGRANRLELAIAVLREAAVLEDAWLDEQ----------------------------------------------------------------------GRGVEADAGIAASGGRSSVNETAKFNSGKLAGGEDAEATIDGDKSATAGAVAAWDGS--ETSTAEGPLRARSSLQPAFNAAINACVKAGSHGEARLLMRDMGERGLRPGREAFNSLLVACSTSYE 518
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15071.3595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA9_9PHAE2.000e-20571.56PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7FK86_ECTSI1.250e-14958.40PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 7..125
e-value: 4.3E-22
score: 81.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 574..623
e-value: 3.2E-7
score: 31.8
coord: 326..444
e-value: 2.8E-10
score: 41.8
coord: 128..189
e-value: 3.4E-5
score: 25.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 341..370
e-value: 6.0E-4
score: 19.9
coord: 576..605
e-value: 0.003
score: 17.7
coord: 142..168
e-value: 1.7E-4
score: 21.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 40..87
e-value: 7.0E-8
score: 32.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 45..76
e-value: 7.1E-6
score: 23.9
coord: 144..168
e-value: 2.6E-5
score: 22.1
coord: 78..103
e-value: 6.0E-4
score: 17.8
coord: 576..607
e-value: 6.4E-5
score: 20.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 339..373
score: 8.583
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..106
score: 9.361
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 8.977
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 41..75
score: 9.997
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 394..424
score: 5.481
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 573..607
score: 9.569
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 37..420

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15071contigE-fasciculatus_F_contig15071:411..3072 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15071.3595.1mRNA_E-fasciculatus_F_contig15071.3595.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15071 411..3090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15071.3595.1 ID=prot_E-fasciculatus_F_contig15071.3595.1|Name=mRNA_E-fasciculatus_F_contig15071.3595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=624bp
MQTLEKQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTWGYNCAME
ACARSGDWGSAVELMDEMRTHGLSHDAFTYGAALEACGRTGNWEKAEAIV
EQMADAYTESVEGASGNGDGDIGGGVAAVTHSGKSPLSPTAVHCNALLQS
YSRGKRMDKALRLLDEMLAVAPVALSSATPPPMLSTAAAAATKEKLASSK
VSLEPPPPVLAAAAEAAIGAESTRLDPVEDEEESRRSIGSSSSSSSSSSS
SSSTEYRRTQGPAESHSRPQPPIDEGESSAGANSQASLSSSASGNAKTKT
YPTGKEQPTTDVSVEGSGDDRDRSPLLRWDPRLPLPRPDAVSFGTVIDGC
SRARLADEAVGLLKVMGEERIGGTDPFASGGGGGNGDTPLLPPNVHCLTA
AITACGRANRLELAIAVLRNAAVSEDAYLDEQMRLRRQQEDHAREQQSST
ASPAAAWEWEVVAGMAEALPTPGRRRRQQNQPPGEDTSPVVDGDTSSTAI
LRARREEAGAEVAAVGGRSSVGEAATLNGGRLTGGEDAEVTIDGDKSATA
AAWEGRVGETSTAEGRLPAGASLQPAFNAAINACVKAGSHGEARVLIRDM
GERGLRPGREAFNSLLVACSSSYE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf