mRNA_E-fasciculatus_F_contig15071.3595.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15071.3595.1 vs. uniprot
Match: A0A6H5KCA9_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA9_9PHAE) HSP 1 Score: 617 bits (1591), Expect = 4.430e-206 Identity = 455/645 (70.54%), Postives = 481/645 (74.57%), Query Frame = 1
Query: 1 LPPPWHMQTLEKQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTWGYNCAMEACARSGDWGSAVELMDEMRTHGLSHDAFXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESVEGASGNGDGDIGGGVAAVTHSGKSPLSPTAVHCNALLQSYSRGKRMDKALRLLDEMLAVAPVALSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGAESTRLDPVEXXXXXXXXXXXXXXXXXXXXXXXXTEYRRTQGPAESHSRPQPPIDEGXXXXXXXXXXXXXXXXXXXAKTKTYPT-------GKEQPTTDVSV-EGSGDDR---DRSPLLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGTDPFASGGGGGNGDTPLLPPNVHCLTAAITACGRANRLELAIAVLRNAAVSEDAYLDEQMRL-RRQQEDHAREQQSSTASPAAAWEWEVVAGMAEALPTPGRRRXXQNQPPGEDTSPVVDGDTSSTAILRARREEAGAEVAAVGGRSSVGEAATLNGGRLTGGEDAEVTIDGDKSATA---AAWEGRVGETSTAEGRLPAGASLQPAFNAAINACVKAGSHGEARVLIRDMGERGLRPGREAFNSLLVACSSSYE 1890
+PP + QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTT DWGSAVELMDEMRTHGLSHDAF XXXXXXXXXXXXXXXXXXXXX QMADAY ES+E A+G+GD GG VAA HSGKSPL PTAVHCNALLQ+YSRGKR+DKALRLLDEMLAVAPV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX I A T DPVE XXXXXX T YRRTQG AE H RPQPP+ EG XXXXXXXXXX GKE+ T D EGS D+ D S LLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGT P A GGGGG+GDTPLLPPNVHCLTAAITACGRANRLELA+AVLR AAV EDA+LDEQ+RL RR QED A E+ SSTASPAAAWE XX+NQPPGEDTSPV D TSST I + R A A +AA GGRS V E A NGG+L GG+DAE TIDG KSA A AAW+ R ETSTAEG LPA +SLQPAFNAAINACVK+GSHGEAR+L+RDMGERGLRPGREAFNSLLV CS+SYE
Sbjct: 43 IPPSGKSYSSALQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTHGLSHDAFTXXXXXXXXXXXXXXXXXXXXXXQMADAYIESLEVANGSGDDGTGGDVAACAHSGKSPLFPTAVHCNALLQAYSRGKRVDKALRLLDEMLAVAPVP-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIAAGLTEFDPVEDEEAFSSGXXXXXXS---------TSYRRTQGLAEIHYRPQPPLGEGESSPAARSEXXXXXXXXXXXXXXXXXXXXXIAKIGKEESTADGGGGEGSRDNDEGDDWSALLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGTAPIA-GGGGGSGDTPLLPPNVHCLTAAITACGRANRLELAMAVLREAAVLEDAWLDEQVRLSRRLQEDDAHEK-SSTASPAAAWEXXXXXXXXXXXXXXXXXXXXRNQPPGEDTSPVADSGTSSTTISKERGVGADAGIAASGGRSLVNETAMFNGGKLAGGKDAEATIDGVKSAAAGAAAAWDRR--ETSTAEGPLPARSSLQPAFNAAINACVKSGSHGEARLLMRDMGERGLRPGREAFNSLLVVCSTSYE 673
BLAST of mRNA_E-fasciculatus_F_contig15071.3595.1 vs. uniprot
Match: D7FK86_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK86_ECTSI) HSP 1 Score: 468 bits (1205), Expect = 2.770e-150 Identity = 374/649 (57.63%), Postives = 390/649 (60.09%), Query Frame = 1
Query: 1 LPPPWHMQTLEKQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTWGYNCAMEACARSGDWGSAVELMDEMRTHGLSHDAFXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESVEGASGNGDGDIGGGVAAVTHSGK-SPLSPTAVHCNALLQSYSRGKRMDKALRLLDEMLAVAPVALSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGAESTRLDPVEXXXXXXXXXXXXXXXXXXXXXXXXTEYRRTQGPAESHSRPQPPIDEGXXXXXXXXXXXXXXXXXXXAKTKTYPTGKEQPTTDVSVEGSGDDRDRSPLLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGTDPFASGGGGG---------------NGDTPLLPPNVHCLTAAITACGRANRLELAIAVLRNAAVSEDAYLDEQMRLRRQQEDHAREQQSSTASPAAAWEWEVVAGMAEALPTPGRRRXXQNQPPGEDTSPVVDGDTSSTAILRARREEAGAEVAAVGGRSSVGEAATLNGGRLTGGEDAEVTIDGDKSATA---AAWEGRVGETSTAEGRLPAGASLQPAFNAAINACVKAGSHGEARVLIRDMGERGLRPGREAFNSLLVACSSSYE 1890
+PP + QACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTT DWGSAVELMDEMRT GLSHDA XXXXXXXXXXXXXXXXXXXXXXEQMADAYTES+EGA+G+GD D GGGV A HSGK S LSPTAVHCNALLQ+YSRGKR+DKALRLLDEMLAVAP SSAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R S LLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAV LLKVMGEERIGGT P A +GDTPLLPPNVHCLTAAITACGRANRLELAIAVLR AAV EDA+LDEQ R EA A +AA GGRSSV E A N G+L GGEDAE TIDGDKSATA AAW+G ETSTAEG L A +SLQPAFNAAINACVKAGSHGEAR+L+RDMGERGLRPGREAFNSLLVACS+SYE
Sbjct: 43 IPPSGKSYSSALQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTRGLSHDAXXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESLEGANGSGDDDAGGGVFA--HSGKKSSLSPTAVHCNALLQAYSRGKRVDKALRLLDEMLAVAPALPSSATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---------------------------------------------------------------------------------------------------SALLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVCLLKVMGEERIGGTAPIAGXXXXXXXXXXXXXXXXXXXXSGDTPLLPPNVHCLTAAITACGRANRLELAIAVLREAAVLEDAWLDEQ----------------------------------------------------------------------GRGVEADAGIAASGGRSSVNETAKFNSGKLAGGEDAEATIDGDKSATAGAVAAWDGS--ETSTAEGPLRARSSLQPAFNAAINACVKAGSHGEARLLMRDMGERGLRPGREAFNSLLVACSTSYE 518 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15071.3595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15071.3595.1 >prot_E-fasciculatus_F_contig15071.3595.1 ID=prot_E-fasciculatus_F_contig15071.3595.1|Name=mRNA_E-fasciculatus_F_contig15071.3595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=624bp MQTLEKQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTWGYNCAMEback to top mRNA from alignment at E-fasciculatus_F_contig15071:411..3090- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15071.3595.1 ID=mRNA_E-fasciculatus_F_contig15071.3595.1|Name=mRNA_E-fasciculatus_F_contig15071.3595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2680bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15071:411..3090- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15071:411..3090- >mRNA_E-fasciculatus_F_contig15071.3595.1 ID=mRNA_E-fasciculatus_F_contig15071.3595.1|Name=mRNA_E-fasciculatus_F_contig15071.3595.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15071:411..3090- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |