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Homology
BLAST of mRNA_E-fasciculatus_F_contig1507.3593.1 vs. uniprot
Match: D7FLR7_ECTSI (Histone hairpin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR7_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 9.120e-22 Identity = 67/99 (67.68%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 25 GEQTAAREILLDMSPNNMSGHVDVDGDQCGEGARRQDDFPHGARGNSGSSGSAGKQQELAPSYGSGSRGSRQGSRDRQQRRVPSEGETRGRKGGWRKNG 321
GEQT REILLDMSPNNMSG +D Q G ARRQDDFPHG GN S AGK QE APSYGS RG+RQGSRDRQQR VPS+ +TR R+GG NG
Sbjct: 12 GEQTE-REILLDMSPNNMSGQIDSG--QGGVCARRQDDFPHGESGNFAS---AGKFQEAAPSYGS--RGNRQGSRDRQQRHVPSDRDTRERRGGRGNNG 102
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 102.4 |
| Seed ortholog evalue | 1.3e-19 |
| Seed eggNOG ortholog | 2880.D7FLR7 |
| Preferred name | SLBP |
| KEGG ko | ko:K18710,ko:K22380 |
| GOs | GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006323,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008334,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0012501,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022402,GO:0030261,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033036,GO:0033260,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035613,GO:0036002,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044786,GO:0045184,GO:0046483,GO:0046907,GO:0048285,GO:0048856,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051276,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071103,GO:0071166,GO:0071204,GO:0071207,GO:0071208,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0098813,GO:0140014,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903047,GO:1990904 |
| EggNOG free text desc. | histone pre-mRNA stem-loop binding |
| EggNOG OGs | KOG3934@1,KOG3934@2759 |
| EC | 2.3.2.27 |
| COG Functional cat. | DKL |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03019,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 324 |
| Cds size | 321 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1507.3593.1 >prot_E-fasciculatus_F_contig1507.3593.1 ID=prot_E-fasciculatus_F_contig1507.3593.1|Name=mRNA_E-fasciculatus_F_contig1507.3593.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
CLLFSVALGEQTAAREILLDMSPNNMSGHVDVDGDQCGEGARRQDDFPHG
ARGNSGSSGSAGKQQELAPSYGSGSRGSRQGSRDRQQRRVPSEGETRGRK
GGWRKNG back to topmRNA from alignment at E-fasciculatus_F_contig1507:131..2929- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1507.3593.1 ID=mRNA_E-fasciculatus_F_contig1507.3593.1|Name=mRNA_E-fasciculatus_F_contig1507.3593.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2799bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1507:131..2929- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCTGTTGTTCAGTGTTGCACTTGGAGAGCAGACGGCAGCGAGAGAGAT
TCTGCTGGACATGAGTCCGAACAACATGTGAGTCTTTCCTATCCCCGCCC
TTCGCCCGACTCGCACCACCTCGTGTGGAGTTCCGGAGAGCTGCGTTTTT
GGGACAAGAGAGAGAGGTGGTTCGTTTGGTGGTCCCTCTCCCCCTCACCA
TCTCACCATCTGCTGCATTCGAATCTCTCAACTTTCAGCACACACACGCA
CACCAGAGAAGCGCAGTTGGTTGAACACAGACGGAAAGGGAGACTGTGGG
CTATAGGAAAAGCACGACGCTGCATACCGGACTGGGCGCCGCTGTGTCTG
TCTCTCTTCGACCGTCGTTTTCTCCACCGCTCTTTGCTCTTTGCCCGACA
GGCTGCTGCACGAAACAAACCGATGCCTAACCCAAACGGCGGCTTCACAG
CAGTGTGGTGCGCGTGACTCGCAACCCCGCTTGTATGAACACGGGGCCAA
TAGCGCGTAGCAGCAGCGGCAGGAGAGCCACCGCGGCAATACTCGCACCG
AAGACACACCAAGCCCGGTTGCGAACCGCGACGATAAATCGCCTACATGT
TTTGTACAGATGAAGGGAGCGGGAGAAGGAGACAATAAGAGCGAGATTTC
AAATTTTTGAACTCGCGCACGTCTCTCCTGCTGCCGAGAGAACACAATCA
GCGCCGTAATAAGCGAGAAGGCTAGACTAGTACAGCAGTAGAGCTGGTTA
GAGCACTATCGCTGCTCCTACCCGACGCTCCTCTTGGTACCTTGGGTCCA
TGCCCTGCACAGCAGCAGGTTTTGTTCACTCTCCTCTGTTTTGTCCACCA
ATGATGATGATGTTGTCTCCTCCCGTATTTAAGCGCGCTTTTTTGCGCGG
GAGCGGCGGGTGATGATATGAAGGATGAAAAAAATAAATAAAATAAACCG
CACACACCAGGCCACCTCAAAGAAGCCATGTTGCCACGAAACCGTGCGCC
GTCAGTCGAGACTTTGGTGCATCTCATGCGTGCACAACACCACCACAGAG
GGTCCAGCAACCATGGAACAACCATCCCTCGCTTCGATACACCACCTACA
TCATGTATTATAAGCAGCGAAGGCGCCGCCGCTAGAACACACGAACTTGA
ACTTGCGTAATGTGTTGTTTACTCAACCTCCTGCCTTGCTCGCTCTATGT
ATCTATCGTACTTGCTGTACCCCCCCCAGAGGGGGGAAGGCCTGCTGGAT
TGTGATCCTTTCCACAATTTGCTGCGGTGGAGTGTTCACACGTTGAAAAT
ATACCCCCTTCGCGAGAATTTTAGTATTACAGCAGTAACCTACTGTAGTA
TCAACCATAGAGAGGGGGGTTTCGTATCCCTATCCCTACCCCCCCCCCCC
CGCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCACCCCTAATAAAAGCA
AGATTAATGCCCCGGCAAAGACTGCTGATACTTTTAAAATTTTAGTACAG
CCGGCATCTCCACCCCTGCCACACCCCAAACAGTTGATGATTTCCCACGA
ATGTCTCATGACTTCCCACGAATATTTCTGGCTTGACTCGACTCCTCGGT
TTCCTTTTTCTCTCAACGGGGCACGTCGAAACGAAACAGGTGCTACCGAG
AGGTGTAGATGTATAAATTACCATACAAATAGTAGCCTGGTGCCATGACT
AGATGAGGCGACCCAAACAATTCTGCATTTTCAGTTGGTTTCCATTGTAC
TTCTGCCATATCTATCCCCTTATCCTGCTTTTCTCCCTTCTGCTGCTGCG
CAGGAGCGGACATGTTGATGTTGACGGCGACCAGTGCGGGGAGGGAGCAA
GACGCCAAGACGATTTCCCTCACGGGTGAGAGAGAAATGCGTACAATATG
GTGCCGATTTGCACATACGATGGGCGTGGTGGTGGTGTGTAGATCGTGGG
CAAAATATGAACATGATGCATCGGCGTGTGGGCGGTCGCACCATCCTCTT
TGCTTTGCTTCCCTTCCCCAAAGCCAGGATGCCTCTCTCATGTCTTATGC
GTTCAGGCGGCGTGTGTGCATTTGGTACGATACTTGTTTGGGAGGGGGGG
GCGGGGGCAGAGCCTTGCCTCGGTGCGTTGAGGTTAAAATACGTTTTGAG
ATGTGCATGTACAATGTACAAAGCCGGTGCTCGAAAATCAGTTAGGCTCA
ACGTCCTGTGCGTATTGAGATGTATATGTAACTCCGGTGCTTCCATCTCG
AAAATTATAAGTATATTGTGTACAACCCATCCCTCGCGTAGGATCGCCTC
CTGCTGTAGACGCTCCGGAGAAAAGGCTATTTCCCTTCCTGCGTAAGCAC
TCAAGCTAGGGTACTGTATCAACGGTGCGCGTGGTTGACAAACTTTTGTT
CCGTGAGAACACCAGACTATTTAATAGCTGTGGCGCTCTTTGGTGCAGTA
TTGGGGTGGCAAGCCGGTTGAAGCCGACCCTGGAAATATCGCGAGGTGTG
TTGGCGGTCCTATTGTACCCCTTATGCATGGAATTCTGGTTAGGTTTAGG
GTACATAACCCTACCCCCTCGCACGTTTTCCCGACATAATTAGTCCCCCC
ACTCCCCTTTCGCTCTTTCGCGGTAGTGCACGTGGCAACTCTGGATCCTC
TGGATCTGCGGGGAAGCAGCAAGAGCTGGCACCGTCATATGGTAGTGGTA
GTCGTGGCAGTCGGCAAGGGAGTCGGGATCGGCAACAGCGACGTGTTCCG
AGCGAAGGGGAGACAAGGGGAAGGAAGGGGGGCTGGCGCAAGAACGGCG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1507:131..2929- >mRNA_E-fasciculatus_F_contig1507.3593.1 ID=mRNA_E-fasciculatus_F_contig1507.3593.1|Name=mRNA_E-fasciculatus_F_contig1507.3593.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1507:131..2929- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCTGTTGTTCAGTGTTGCACTTGGAGAGCAGACGGCAGCGAGAGAGAT
TCTGCTGGACATGAGTCCGAACAACATTGTCTGTTGTTCAGTGTTGCACT
TGGAGAGCAGACGGCAGCGAGAGAGATTCTGCTGGACATGAGTCCGAACA
ACATGAGCGGACATGTTGATGTTGACGGCGACCAGTGCGGGGAGGGAGCA
AGACGCCAAGACGATTTCCCTCACGGGAGCGGACATGTTGATGTTGACGG
CGACCAGTGCGGGGAGGGAGCAAGACGCCAAGACGATTTCCCTCACGGTG
CACGTGGCAACTCTGGATCCTCTGGATCTGCGGGGAAGCAGCAAGAGCTG
GCACCGTCATATGGTAGTGGTAGTCGTGGCAGTCGGCAAGGGAGTCGGGA
TCGGCAACAGCGACGTGTTCCGAGCGAAGGGGAGACAAGGGGAAGGAAGG
GGGGCTGGCGCAAGAACGGCTGCACGTGGCAACTCTGGATCCTCTGGATC
TGCGGGGAAGCAGCAAGAGCTGGCACCGTCATATGGTAGTGGTAGTCGTG
GCAGTCGGCAAGGGAGTCGGGATCGGCAACAGCGACGTGTTCCGAGCGAA
GGGGAGACAAGGGGAAGGAAGGGGGGCTGGCGCAAGAACGGC back to top
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