mRNA_E-fasciculatus_F_contig15065.3590.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15065.3590.1
Unique NamemRNA_E-fasciculatus_F_contig15065.3590.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15065.3590.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 6.930e-19
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:  112 PGGWGAAVTNGDTTKLAELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAP-ASPLASPATTSGGFL 309
            P  WG AV +GD TKLAELVL+WSG KPE ALSV+R+CVS++E+EVA S P +SPL +  TT GG +
Sbjct:   12 PDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTTLGGSV 78
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BLAST of mRNA_E-fasciculatus_F_contig15065.3590.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.810e-17
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:  112 PGGWGAAVTNGDTTKLAELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAP-ASPLASPATTSG 300
            P  WG AV  GD TKLAELVLVWSGS+PE ALS+LR CV L+EEE AFS P +SPL SP+ T G
Sbjct:   67 PDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLG 130
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BLAST of mRNA_E-fasciculatus_F_contig15065.3590.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.760e-10
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  124 GAAVTNGDTTKLAELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAP-ASPLASPATTSG 300
            G+AV +G  TKLAELVLVWS SKPE ALS+ R CVSL+E+E A SA  +SPL   +T  G
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPG 130
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BLAST of mRNA_E-fasciculatus_F_contig15065.3590.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.810e-10
Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:  151 TKLAELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAPASP 273
            T+LA+LVLVWSGS+PE ALS+L++CVSL+E+E AFSAPA P
Sbjct:   57 TRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFP 97
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15065.3590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH80_ECTSI6.930e-1962.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE5.810e-1768.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI1.760e-1061.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI5.810e-1073.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15065contigE-fasciculatus_F_contig15065:180..877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927986.0018497-CDS-E-fasciculatus_F_contig15065:179..2941622927986.0018497-CDS-E-fasciculatus_F_contig15065:179..294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15065 180..294 +
1695995778.979881-CDS-E-fasciculatus_F_contig15065:179..2941695995778.979881-CDS-E-fasciculatus_F_contig15065:179..294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15065 180..294 +
1622927986.0144684-CDS-E-fasciculatus_F_contig15065:677..8771622927986.0144684-CDS-E-fasciculatus_F_contig15065:677..877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15065 678..877 +
1695995778.9966092-CDS-E-fasciculatus_F_contig15065:677..8771695995778.9966092-CDS-E-fasciculatus_F_contig15065:677..877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15065 678..877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15065.3590.1prot_E-fasciculatus_F_contig15065.3590.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15065 180..877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15065.3590.1

>prot_E-fasciculatus_F_contig15065.3590.1 ID=prot_E-fasciculatus_F_contig15065.3590.1|Name=mRNA_E-fasciculatus_F_contig15065.3590.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
SKPERALSILKDCVSVLEREVVVSVPASSPLQSPPTTPGGWGAAVTNGDT
TKLAELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAPASPLASPATTSG
GFLE*
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mRNA from alignment at E-fasciculatus_F_contig15065:180..877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15065.3590.1 ID=mRNA_E-fasciculatus_F_contig15065.3590.1|Name=mRNA_E-fasciculatus_F_contig15065.3590.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=698bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15065:180..877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAAAGCCCGAGCGGGCTCTGTCGATTCTAAAAGACTGCGTTTCTGTGCT
GGAGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTTCTCCCCTTCAATCGC
CCCCGACTACGCCTGGTGGGTTCCCTTTCGTCGTTTAGAGTTCTTGAAAT
GGCCTGCACCCTGACCGACTTGAGGTGATGCCACGGGTCTTGCATGGTGG
CTGAGAACTGCTTTGTGTTTTTTCCTAGCAGTGAGGCGTGCAGAGGGGTG
CTCAGAGCGTAGCGCCGGTCTTGTGATATGATACCATCTCGTCACGTATC
CATGTGCGTTTTGTAGATTCCGTCCGATAGTTGAATAACACGACTGAGTC
CAAATTGTGTAATGAACCATGGACCTTTACGAGGAAACAAGTTGGTTTGA
ATCTCTTTCGAGGGAAGTCGCAGTAATCGAAAGTAGGCTTCGACGGATCC
AAAACCACCACGTAGCTTTGACAACACCATATACTTATGATTCTGCAGGT
GGATGGGGCGCGGCCGTGACTAACGGCGACACTACTAAGCTAGCCGAGCT
GGTGCTGGTTTGGAGCGGTTCAAAGCCCGAGCATGCTCTGTCCGTTCTGA
GGAACTGCGTTTCTTTGATGGAGGAGGAGGTTGCGTTTTCAGCTCCGGCT
TCTCCCCTTGCTTCGCCCGCGACTACTTCTGGTGGGTTCCTTGAGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15065:180..877+

>mRNA_E-fasciculatus_F_contig15065.3590.1 ID=mRNA_E-fasciculatus_F_contig15065.3590.1|Name=mRNA_E-fasciculatus_F_contig15065.3590.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15065:180..877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAAAGCCCGAGCGGGCTCTGTCGATTCTAAAAGACTGCGTTTCTGTGCT
GGAGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTTCTCCCCTTCAATCGC
CCCCGACTACGCCTGTCAAAGCCCGAGCGGGCTCTGTCGATTCTAAAAGA
CTGCGTTTCTGTGCTGGAGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTT
CTCCCCTTCAATCGCCCCCGACTACGCCTGGTGGATGGGGCGCGGCCGTG
ACTAACGGCGACACTACTAAGCTAGCCGAGCTGGTGCTGGTTTGGAGCGG
TTCAAAGCCCGAGCATGCTCTGTCCGTTCTGAGGAACTGCGTTTCTTTGA
TGGAGGAGGAGGTTGCGTTTTCAGCTCCGGCTTCTCCCCTTGCTTCGCCC
GCGACTACTTCTGGTGGGTTCCTTGAGTAAGTGGATGGGGCGCGGCCGTG
ACTAACGGCGACACTACTAAGCTAGCCGAGCTGGTGCTGGTTTGGAGCGG
TTCAAAGCCCGAGCATGCTCTGTCCGTTCTGAGGAACTGCGTTTCTTTGA
TGGAGGAGGAGGTTGCGTTTTCAGCTCCGGCTTCTCCCCTTGCTTCGCCC
GCGACTACTTCTGGTGGGTTCCTTGAGTAA
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