mRNA_E-fasciculatus_F_contig15040.3575.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15040.3575.1
Unique NamemRNA_E-fasciculatus_F_contig15040.3575.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.180e-52
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 267
            LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH
Sbjct:  451 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 539
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S0SGT6_9CHLO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGT6_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 2.560e-44
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPY 291
            LGY+PVEVDPEDM+ +A E+P  MAAYSVSDAV+TYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCEALLMVEA+RGNIVCPNK     +  Y
Sbjct:   43 LGYNPVEVDPEDMLPFAQEQPHTMAAYSVSDAVSTYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEALLMVEAFRGNIVCPNKTASPGEKHY 139
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A0A9JF46_ARUDO (DNA polymerase epsilon catalytic subunit n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JF46_ARUDO)

HSP 1 Score: 154 bits (389), Expect = 2.120e-43
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFTTAIVACHT 324
            LGYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+A++ +I+CPNKH  +ADL  F+   ++   T
Sbjct:  135 LGYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFKAHIICPNKH--QADLEKFYNNRLLESET 240
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S2FZE0_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.850e-43
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            LGYDPVEVDPEDMVR+A E+P  MA+YSVSDAVATYYLY  YVH F+F+L TIIPMGP+DVL KGSGTLCEALLM+EA R N++CPNK V
Sbjct:  133 LGYDPVEVDPEDMVRFAKEQPEHMASYSVSDAVATYYLYSLYVHDFIFALTTIIPMGPEDVLNKGSGTLCEALLMIEACRCNVICPNKQV 222
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S2UHD4_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHD4_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.860e-43
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            LGYDPVEVDPEDM+RYA ERP  MA+YSVSDAVATYYLY+ YVHMF+FSL TIIPMGP+DVLRKGSGTLCEALLMV+A   +I+CPNK +
Sbjct:  233 LGYDPVEVDPEDMLRYAKERPVHMASYSVSDAVATYYLYEKYVHMFIFSLATIIPMGPEDVLRKGSGTLCEALLMVQACTKDIICPNKQL 322
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: B8BW81_THAPS (DNA polymerase epsilon catalytic subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW81_THAPS)

HSP 1 Score: 159 bits (401), Expect = 6.400e-43
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            LGYDPVEVDPEDMVRYA +RP+ MA+YSVSDAVATYYLY  YVHMF+FSLCTIIPMGP+DVLRKGSGTLCEALLMVEA   +I+CPNK V
Sbjct:  340 LGYDPVEVDPEDMVRYARDRPSHMASYSVSDAVATYYLYDKYVHMFIFSLCTIIPMGPEDVLRKGSGTLCEALLMVEACTKSIICPNKQV 429
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A5B7C0C4_DAVIN (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7C0C4_DAVIN)

HSP 1 Score: 156 bits (394), Expect = 1.190e-42
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFTTAIVACHT 324
            LGYDP+EV+PEDMVR+A ERP  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+AY+ N++CPNKH  ++D   F+T  ++   T
Sbjct:  405 LGYDPLEVNPEDMVRFAKERPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKH--QSDPEKFYTNQLLESET 510
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A1R3JS58_COCAP (DNA polymerase epsilon catalytic subunit n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JS58_COCAP)

HSP 1 Score: 150 bits (378), Expect = 1.580e-42
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFF 297
            LGYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+AY+ N++CP+KH    +  Y F
Sbjct:  204 LGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMWPDEVLRKGSGTLCEMLLMVQAYKANVICPSKHQSDPEKFYKF 302
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A452YAV3_AEGTS (DNA polymerase epsilon catalytic subunit n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YAV3_AEGTS)

HSP 1 Score: 157 bits (396), Expect = 1.950e-42
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFTTAIVACHT 324
            LGYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+A++ NI+CPNKH  +ADL  F+   +V   T
Sbjct:  395 LGYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFQANIICPNKH--QADLEKFYNNRLVESET 500
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BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S4W861_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W861_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.070e-42
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            LGYDPVEVDPEDMVR+A E+P  MA YSVSDAVAT+YLY+ YVHMF+FSL TIIPM P+DVLRKGSGTLCE LLMV+A +  I+CPNK V
Sbjct:   40 LGYDPVEVDPEDMVRFAMEKPAYMAQYSVSDAVATFYLYEKYVHMFIFSLATIIPMNPEDVLRKGSGTLCETLLMVQATQKAIICPNKQV 129
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQC0_ECTSI3.180e-52100.00DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A7S0SGT6_9CHLO2.560e-4475.26DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A0A9JF46_ARUDO2.120e-4367.59DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
A0A7S2FZE0_9STRA2.850e-4377.78DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S2UHD4_9STRA4.860e-4380.00DNA polymerase epsilon catalytic subunit (Fragment... [more]
B8BW81_THAPS6.400e-4383.33DNA polymerase epsilon catalytic subunit n=1 Tax=T... [more]
A0A5B7C0C4_DAVIN1.190e-4268.52DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A1R3JS58_COCAP1.580e-4270.71DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
A0A452YAV3_AEGTS1.950e-4269.44DNA polymerase epsilon catalytic subunit n=3 Tax=A... [more]
A0A7S4W861_9STRA2.070e-4276.67DNA polymerase epsilon catalytic subunit (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15040contigE-fasciculatus_F_contig15040:2282..3124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.4e-45
Seed eggNOG ortholog2880.D8LQC0
Preferred namePOLE1
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA replication proofreading
EggNOG OGsCOG0417@1,KOG1798@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.3579726-CDS-E-fasciculatus_F_contig15040:2281..24131622927984.3579726-CDS-E-fasciculatus_F_contig15040:2281..2413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15040 2282..2413 -
1695995778.232321-CDS-E-fasciculatus_F_contig15040:2281..24131695995778.232321-CDS-E-fasciculatus_F_contig15040:2281..2413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15040 2282..2413 -
1622927984.372721-CDS-E-fasciculatus_F_contig15040:2932..31241622927984.372721-CDS-E-fasciculatus_F_contig15040:2932..3124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15040 2933..3124 -
1695995778.2437587-CDS-E-fasciculatus_F_contig15040:2932..31241695995778.2437587-CDS-E-fasciculatus_F_contig15040:2932..3124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15040 2933..3124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15040.3575.1prot_E-fasciculatus_F_contig15040.3575.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15040 2282..3124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15040.3575.1

>prot_E-fasciculatus_F_contig15040.3575.1 ID=prot_E-fasciculatus_F_contig15040.3575.1|Name=mRNA_E-fasciculatus_F_contig15040.3575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSL
CTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFT
TAIVACHT
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mRNA from alignment at E-fasciculatus_F_contig15040:2282..3124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15040.3575.1 ID=mRNA_E-fasciculatus_F_contig15040.3575.1|Name=mRNA_E-fasciculatus_F_contig15040.3575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=843bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15040:2282..3124- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAGGGTACGACCCCGTGGAGGTGGACCCGGAGGACATGGTGAGGTACGC
GTCGGAGAGGCCCACGGAGATGGCGGCCTACTCCGTCTCCGACGCCGTGG
CCACCTACTACCTCTACCAGACCTACGTGCACATGTTCGTCTTCAGCCTG
TGCACCATCATCCCGATGGGGCCGGACGATGTGTTGCGGAAGGTACAAAA
AAGTCGCGTTTTATTGTGGTTTTGGGAAGACGGGTAGGTGGGTGCGGGAG
AGGTTTGCCACAGCCCTGTTGTTGGTGGTGGTGGAAGCGGCTGTGGCGAT
GGTGGTTATTGTTATGGGGCGCCTCGTCATGCCGTTGGTTCTTCCGTTTC
TTCTCAAACATAAGGAATAACTCCCCGTCATGCTGAAATTACTCGGTTGT
TGGTGTCGTTGTTGGCGGTGGCCGTGACCTGCTCCGGCGGTGGTGATGAT
AGTAGTATTGATGTTGTGGAGCGCTTGTACAGTCCTGTCGTTTCCACAGT
CGTACAGGAGAGGTGGCCAAACAGAGTTGTATCAACACCGCATTCCGAGT
ACAGACAGTCCAAACATGGAAGGATTCCCGGCACGCTGAAATGTGTCCCT
TTCATCACTTGCCGACTTCCCCTCTTTTCACGGCGTATTTAACCCCCACA
CCCCCGCCGGCCTCCCTTGGTCCTCGTAATCAATCGCAACCACCGTCATG
TACGCGTGCAGGGATCCGGAACACTCTGCGAGGCGCTTTTGATGGTGGAG
GCTTACCGAGGAAACATCGTGTGTCCGAACAAGCACGTGAGGAGGGCTGA
CTTGCCGTATTTTTTCACCACCGCCATTGTTGCATGTCATACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15040:2282..3124-

>mRNA_E-fasciculatus_F_contig15040.3575.1 ID=mRNA_E-fasciculatus_F_contig15040.3575.1|Name=mRNA_E-fasciculatus_F_contig15040.3575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15040:2282..3124- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAGGGTACGACCCCGTGGAGGTGGACCCGGAGGACATGGTGAGGTACGC
GTCGGAGAGGCCCACGGAGATGGCGGCCTACTCCGTCTCCGACGCCGTGG
CCACCTACTACCTCTACCAGACCTACGTGCACATGTTCGTCTTCAGCCTG
TGCACCATCATCCCGATGGGGCCGGACGATGTGTTGCGGAAGCTAGGGTA
CGACCCCGTGGAGGTGGACCCGGAGGACATGGTGAGGTACGCGTCGGAGA
GGCCCACGGAGATGGCGGCCTACTCCGTCTCCGACGCCGTGGCCACCTAC
TACCTCTACCAGACCTACGTGCACATGTTCGTCTTCAGCCTGTGCACCAT
CATCCCGATGGGGCCGGACGATGTGTTGCGGAAGGGATCCGGAACACTCT
GCGAGGCGCTTTTGATGGTGGAGGCTTACCGAGGAAACATCGTGTGTCCG
AACAAGCACGTGAGGAGGGCTGACTTGCCGTATTTTTTCACCACCGCCAT
TGTTGCATGTCATACAGGATCCGGAACACTCTGCGAGGCGCTTTTGATGG
TGGAGGCTTACCGAGGAAACATCGTGTGTCCGAACAAGCACGTGAGGAGG
GCTGACTTGCCGTATTTTTTCACCACCGCCATTGTTGCATGTCATACA
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