mRNA_E-fasciculatus_F_contig1504.3573.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1504.3573.1
Unique NamemRNA_E-fasciculatus_F_contig1504.3573.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1504.3573.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 4.410e-7
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    1 MIVKYEGAIRNGTMEGQGRAEYDDGE 78
            MIVKYEGAI +GTMEGQGRAEYDDGE
Sbjct:    1 MIVKYEGAIYHGTMEGQGRAEYDDGE 26
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1504.3573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0U8_ECTSI4.410e-792.31Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1504contigE-fasciculatus_F_contig1504:9809..9916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.2277563-CDS-E-fasciculatus_F_contig1504:9808..99161622927984.2277563-CDS-E-fasciculatus_F_contig1504:9808..9916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1504 9809..9916 -
1695995778.1830063-CDS-E-fasciculatus_F_contig1504:9808..99161695995778.1830063-CDS-E-fasciculatus_F_contig1504:9808..9916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1504 9809..9916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1504.3573.1prot_E-fasciculatus_F_contig1504.3573.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1504 9809..9916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1504.3573.1

>prot_E-fasciculatus_F_contig1504.3573.1 ID=prot_E-fasciculatus_F_contig1504.3573.1|Name=mRNA_E-fasciculatus_F_contig1504.3573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=36bp
MIVKYEGAIRNGTMEGQGRAEYDDGEASILTALLE*
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mRNA from alignment at E-fasciculatus_F_contig1504:9809..9916-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1504.3573.1 ID=mRNA_E-fasciculatus_F_contig1504.3573.1|Name=mRNA_E-fasciculatus_F_contig1504.3573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=108bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1504:9809..9916- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGTCAAGTACGAAGGAGCCATCCGCAACGGCACCATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTATTCTAACCGCTCTTC
TGGAATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1504:9809..9916-

>mRNA_E-fasciculatus_F_contig1504.3573.1 ID=mRNA_E-fasciculatus_F_contig1504.3573.1|Name=mRNA_E-fasciculatus_F_contig1504.3573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1504:9809..9916- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGTCAAGTACGAAGGAGCCATCCGCAACGGCACCATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTATTCTAACCGCTCTTC
TGGAATGAATGATCGTCAAGTACGAAGGAGCCATCCGCAACGGCACCATG
GAAGGCCAAGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTATTCTAAC
CGCTCTTCTGGAATGA
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