prot_E-fasciculatus_F_contig150.3546.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig150.3546.1
Unique Nameprot_E-fasciculatus_F_contig150.3546.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length215
Homology
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BLAST of mRNA_E-fasciculatus_F_contig150.3546.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 2.170e-86
Identity = 160/220 (72.73%), Postives = 173/220 (78.64%), Query Frame = 0 
Query:    1 MTTKKACYGPPRLFDSEWRFPETAVEKKSMAVFEDLWAKGLCAASGSNYAADFVVYNGPPTECHSVAAVMISRGASDELSPAEVSGFARVQQAVGKRAVIATAPLATNDTSPVVVGGSTLASATXXXXXVVASRDGERGPTGVEGRATAPRRHAVGKEATLGTVSATALEEPPTPAPXXXXXXXXXXXXXXXXXX------ANDGVRYITLQFHSVSSRV 214
            MTTKK C+ PPR  DS+WRFPETAV  KS AVFEDLWAKGLC ASGSNYAADFVVYNGPPTE HS+AAV++SRGA+DELSPAE+SGFARVQQAVGKRAVIATAPLATNDTSP+VV  +TLASA      VVA R  E  PTGVEGR + PRRH  G+E   GTV  TA E+ PT AP       XXXXXXXXXXX      AN+GVRYITLQFHSVSSRV
Sbjct:  125 MTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSRV 344
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig150.3546.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE2.170e-8672.73tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 29..103
e-value: 3.1E-12
score: 46.4
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 27..115
e-value: 3.4E-13
score: 51.5
NoneNo IPR availablePANTHERPTHR13070TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATEDcoord: 15..105
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 30..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig150contigE-fasciculatus_F_contig150:25457..26559 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig150.3546.1mRNA_E-fasciculatus_F_contig150.3546.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig150 24239..29135 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig150.3546.1 ID=prot_E-fasciculatus_F_contig150.3546.1|Name=mRNA_E-fasciculatus_F_contig150.3546.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
MTTKKACYGPPRLFDSEWRFPETAVEKKSMAVFEDLWAKGLCAASGSNYA
ADFVVYNGPPTECHSVAAVMISRGASDELSPAEVSGFARVQQAVGKRAVI
ATAPLATNDTSPVVVGGSTLASATAAAAAVVASRDGERGPTGVEGRATAP
RRHAVGKEATLGTVSATALEEPPTPAPAAVDAAAAAEAAAAAAAAANDGV
RYITLQFHSVSSRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036167tRNA_intron_Endo_cat-like_sf
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like