mRNA_E-fasciculatus_F_contig14948.3511.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14948.3511.1
Unique NamemRNA_E-fasciculatus_F_contig14948.3511.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14948.3511.1 vs. uniprot
Match: D7FU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU46_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 8.700e-115
Identity = 231/284 (81.34%), Postives = 238/284 (83.80%), Query Frame = 1 
Query:    1 FQIPLQFLFPVHNSLKHAALAWRTRAKKERDRQGLFAADEEAFAHGMVVVHVSVSRARGLGPIAAXXXXXXXXXGAPQSAPQLLGSGGTDAGXXXXXSNNSGQSSPVGQASSGAGRXXXXXXXXXXXXXXXLGGLGIEGAKVSSSMRAFGGKMRGMGVKAVAMARIASQASPAAHLRLGAVSSEEKVLRQANFFVKVVYGPPSLSAISTSDEDNSPSSGGDGSGGGLAAAGEAERVVGVTNTEYGSVEPVWGTNANLNACPYNAPRDKHQVSGATRLDVVSDIT 852
            F+IPLQFLFPVHNSLKHAALAWR RA+KER RQGLF+ADEEAFAHGMVVVHVSVSRARGLGPIAAXXXXXXXXX APQSA QLLG G     XXXXXSNN GQ+SPVGQASSG G                L GLGIEGAKVSSSMRAFGG+M+GMGVKAVAMARIASQASPAAHLRLGAVSSEEK+LRQANFFVKVVYGPP LSA STSD          GSGG LA  GE ERVVGVTNTEYGSVEPVWG NANLNACPYNAPRDKHQVSGATRLDVVSDIT
Sbjct:  388 FKIPLQFLFPVHNSLKHAALAWRARARKERHRQGLFSADEEAFAHGMVVVHVSVSRARGLGPIAAXXXXXXXXXXAPQSA-QLLG-GXXXXXXXXXXSNNPGQASPVGQASSGTG-GGREGLPAAGGGRGGLVGLGIEGAKVSSSMRAFGGRMKGMGVKAVAMARIASQASPAAHLRLGAVSSEEKILRQANFFVKVVYGPP-LSANSTSDXXXXXXXXXXGSGG-LARPGEPERVVGVTNTEYGSVEPVWGANANLNACPYNAPRDKHQVSGATRLDVVSDIT 666
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BLAST of mRNA_E-fasciculatus_F_contig14948.3511.1 vs. uniprot
Match: A0A6H5K1V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V3_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.420e-63
Identity = 148/188 (78.72%), Postives = 158/188 (84.04%), Query Frame = 1 
Query:    7 IPLQFLFPVHNSLKHAALAWRTRAKKERDRQGLFAADEEAFAHGMVVVHVSVSRARGLGPIAAXXXXXXXXXGAPQSAPQLLGSGGTDAGXXXXXSNNSGQSSPVGQASSGAGRXXXXXXXXXXXXXXXLGGLGIEGAKVSSSMRAFGGKMRGMGVKAVAMARIASQASPAAHLRLGAVSSEEKVLRQ 570
            IPLQFLFPVHNS+KHAALAWR RA+KER+RQGLF+ DEEAFAHGMVVVHVSVSRARGLGPIA XXXXXXXXXGAPQSA QL+G GG DAG     SNN GQSS V +AS GA R         XXXXXX     IEGAKVSSSM+AFGG+M+GMGVKAVAMARIASQASPAAHLRLGAVSSEEK+LRQ
Sbjct:  354 IPLQFLFPVHNSVKHAALAWRARARKERNRQGLFSTDEEAFAHGMVVVHVSVSRARGLGPIAXXXXXXXXXXGAPQSA-QLVG-GGADAGGRAT-SNNQGQSSLVRKASFGA-RGGRGGLPATXXXXXXXXXXXIEGAKVSSSMKAFGGRMKGMGVKAVAMARIASQASPAAHLRLGAVSSEEKILRQ 537
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14948.3511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU46_ECTSI8.700e-11581.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1V3_9PHAE1.420e-6378.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14948contigE-fasciculatus_F_contig14948:7..3052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size852
Cds size852
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14948.3511.1prot_E-fasciculatus_F_contig14948.3511.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14948 7..3052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927974.4507213-CDS-E-fasciculatus_F_contig14948:6..5761622927974.4507213-CDS-E-fasciculatus_F_contig14948:6..576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14948 7..576 +
1695995774.3100572-CDS-E-fasciculatus_F_contig14948:6..5761695995774.3100572-CDS-E-fasciculatus_F_contig14948:6..576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14948 7..576 +
1622927974.4783683-CDS-E-fasciculatus_F_contig14948:2551..27911622927974.4783683-CDS-E-fasciculatus_F_contig14948:2551..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14948 2552..2791 +
1695995774.327442-CDS-E-fasciculatus_F_contig14948:2551..27911695995774.327442-CDS-E-fasciculatus_F_contig14948:2551..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14948 2552..2791 +
1622927974.4988556-CDS-E-fasciculatus_F_contig14948:3010..30521622927974.4988556-CDS-E-fasciculatus_F_contig14948:3010..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14948 3011..3052 +
1695995774.3395321-CDS-E-fasciculatus_F_contig14948:3010..30521695995774.3395321-CDS-E-fasciculatus_F_contig14948:3010..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14948 3011..3052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14948.3511.1

>prot_E-fasciculatus_F_contig14948.3511.1 ID=prot_E-fasciculatus_F_contig14948.3511.1|Name=mRNA_E-fasciculatus_F_contig14948.3511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=284bp
FQIPLQFLFPVHNSLKHAALAWRTRAKKERDRQGLFAADEEAFAHGMVVV
HVSVSRARGLGPIAAAAAAAAATAGAPQSAPQLLGSGGTDAGGGGATSNN
SGQSSPVGQASSGAGRGGREGVPPAGGGRGGLGGLGIEGAKVSSSMRAFG
GKMRGMGVKAVAMARIASQASPAAHLRLGAVSSEEKVLRQANFFVKVVYG
PPSLSAISTSDEDNSPSSGGDGSGGGLAAAGEAERVVGVTNTEYGSVEPV
WGTNANLNACPYNAPRDKHQVSGATRLDVVSDIT
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mRNA from alignment at E-fasciculatus_F_contig14948:7..3052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14948.3511.1 ID=mRNA_E-fasciculatus_F_contig14948.3511.1|Name=mRNA_E-fasciculatus_F_contig14948.3511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3046bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14948:7..3052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCAGATCCCGCTGCAGTTCCTGTTCCCGGTGCACAACTCCCTCAAGCA
CGCCGCCCTGGCGTGGCGCACCAGGGCAAAGAAGGAGCGGGACCGGCAGG
GTCTCTTCGCGGCAGACGAGGAGGCGTTCGCCCACGGCATGGTCGTGGTC
CACGTGAGCGTCTCCAGGGCCAGGGGGCTGGGTCCCATCGCGGCCGCGGC
CGCGGCCGCGGCGGCCACCGCTGGGGCCCCACAGAGTGCGCCGCAGCTGC
TAGGGAGTGGGGGGACCGATGCTGGTGGCGGTGGCGCAACGTCTAACAAC
TCAGGGCAGTCGTCTCCCGTAGGGCAGGCGTCTTCCGGGGCTGGGAGAGG
AGGGAGAGAGGGGGTACCGCCGGCTGGCGGGGGTAGGGGGGGCCTGGGGG
GCCTGGGCATCGAGGGGGCCAAGGTGTCGTCGTCGATGAGGGCGTTCGGG
GGAAAGATGAGGGGGATGGGGGTCAAGGCGGTGGCGATGGCGAGGATCGC
GTCGCAGGCGAGCCCGGCGGCGCACCTAAGGCTCGGCGCTGTCTCCTCTG
AGGAGAAGGTTCTTCGACAGGTATGGGTGCGTGCGTGCGTGCGTGCGTGC
GTGCGCCGTGTTTGTGAGTCTACGCATGTGGTGTGAGTCTACATGTGTGG
TGTAAGTCTACGTATGTGGTGTGAGTCTATGTATGTGTTTTGTCTGGTTG
GCGTCGCCCGCGATAAGCGGCTGACCCAGAAGATTCTCCGACAGGTGTCC
GTGCATGCGTGTGTGTATGTGTGTGTGTTTTTTTTATTATTATTATCATT
AGCATCGACCACGCTAACCGGCTGACCAATGAAAATACCCCAGTGTGTCA
GCGGGTAACGTCAAGATCCCTGGAAGGGGGCCAGTGTGTGTGTGTGTGTG
TGTGTGTGTTCTTAATTAGCCTCGACCGCGCTATATAACCGGCTAGCCAA
TGAAACTACGTCTGACAGTCTCAGTGCGGTTGAAAACACGAAATACTTCC
AAAGACAATGAACTGCTACATACCCCGTGATGGGGCGTGATGTTGTATGT
GTGTGTGTGTGTTGTCTTCATGAACATCGACCACGCTGACCGGCTGACCA
ATGAAAAGACGTCAGTCTTGTATCGGAATAAAATACAATGAATATAACCT
TATAATCAAAGGGTAAGGGTTCTCTGCAGACAGATAGGCGTGAGTTGACG
CCAAGCGGCTTGCTTCGGCAGGTGTGCGTACGTGCATGCGCATGCGTGTG
AGTAGTCTACCGTAGGTGACATGACGTGGGATACCACACCCCCTGTTGTA
GACATGGACCCATTCCCAAAGCTCGATTACTCGACAGCAGAAAATAGGTA
TAGTAGTGAATAGTGTTGCTGTGATGCCGAAAAAGAAAAACGCGGCGTTC
GAACCGTCGCATCATCATCATCATCATCATCATCATCATCGAGAGAGAGA
GAGGTTTCCGAAAACAAACGTGGTGGTTTGGTTGTGTGCACCGCCTTCGT
CGTGGAGTAATCGATGATAGCTTTGAGAATCGGTCCGGGGGGTGTGGTTT
CTTGCGCCACCTACGTTATGTGGTATTTCTCTAGTTTGGCGTCGACCGCT
TTAAGCGGCTGGCCCATGAGAAGATGTCAGCCTCAAAGACGGAGAACGCT
TATTTTATAGGCCGTATTCTTGGACTTAGTGAGGAGGTGGTCATGTGTGT
GCATGTAATACTTTTTTTTAATCGCTCGCGCTATCCGCCTGTATTTGTTC
GAGAGATGTCGGTCCTGGCACGACAATACAACAAGAAGAAGGCGAAGGAG
CCTCGGTAAAGCGTTGGACACCTACTACTACTGTAGGTTCAAGAATCTTC
GCCATAAAGAGTAAATCATGAGTGCGTATGTGTGTAATGTTTTGTGTGTT
TTTTTCGAAGCTATTCTCAGCGGAACGATAGCGATAACGAAAAAGTGTGC
CTTTGTGAGCTGTATTTTGGAGGTAGACGTTTTCAGACCTGGCCAACCTT
TCGGTTCTCAGGACCAACACCACTCGTAACAAGGCCCCCACTTGGGCTTA
AAGCTTTAGCTTTCCCCACAACAGACTATTGTACCACAGCAAGCCAGTGT
CGTTTTCAGTTTTGTTTGTGCCCGGTGAAGTAAGTGCTTTACAATGTATG
TGCTGGATTCTCGTTCGAGACTCTTGTTGCACCTGTGGTTGCTGCTGCGA
CGGTAGATGGTCGTGTCCTGTGTGCTGGATGCAAGACTCTTGTTGCACCT
GTGAGTGCTGCTGCGACGGTTAATGATCATACCTTGTCGACGGTTTCATT
TCAAGGTCGGTGGATGAGGCAATGGTGAGAGGAATGTGCCTCCTGACTGC
CATGTGCTACTGCCAATGAGTTGTTTTCCGTACCATGACTTTCATCCGTA
CCATGACTCTCACAGCTGTCGACGGGGCCTACTGTAGCTTTGTCATCGAA
CGCTGCCGGGCGACGACAACAACAACAACAACAACATCACCATCTGTATC
CGACTTGTTGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAGGCCAA
CTTCTTCGTGAAGGTAGTCTACGGGCCCCCCTCCCTGTCTGCGATTAGCA
CCTCCGACGAAGACAACTCCCCCAGTAGCGGTGGCGATGGTAGCGGTGGT
GGTCTTGCCGCGGCCGGCGAAGCGGAGAGAGTGGTTGGTGTCACCAATAC
GGAGTACGGCAGCGTGGAGCCGGTGTGGGGGACGAATGCCAACCTTAACG
CCTGTCCGTACAACGCCCCGAGGGACAAGCATCAGGTAAGGGGAGGGGGG
GGAGGTCAATTCCGCGGGCGACTCACGTGAGCGGTTCGTAGTAGTTGGTC
CGTTTTTTATCGCACAGAAGGCTGGTCCGTATGTTGTTGTTTGCTGGTGC
TGGAGATGGTGCTGCTCTTTGTCGACGCCTGCGGTGTGAACTAATTGTTT
CCCTGGCCCCCTCTCTGTCTTTTCTCAACGGCGTGCTATTCTATGTTCGT
GCAGGTGTCCGGAGCTACGCGGTTAGATGTCGTCAGCGACATTACT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14948:7..3052+

>mRNA_E-fasciculatus_F_contig14948.3511.1 ID=mRNA_E-fasciculatus_F_contig14948.3511.1|Name=mRNA_E-fasciculatus_F_contig14948.3511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14948:7..3052+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCAGATCCCGCTGCAGTTCCTGTTCCCGGTGCACAACTCCCTCAAGCA
CGCCGCCCTGGCGTGGCGCACCAGGGCAAAGAAGGAGCGGGACCGGCAGG
GTCTCTTCGCGGCAGACGAGGAGGCGTTCGCCCACGGCATGGTCGTGGTC
CACGTGAGCGTCTCCAGGGCCAGGGGGCTGGGTCCCATCGCGGCCGCGGC
CGCGGCCGCGGCGGCCACCGCTGGGGCCCCACAGAGTGCGCCGCAGCTGC
TAGGGAGTGGGGGGACCGATGCTGGTGGCGGTGGCGCAACGTCTAACAAC
TCAGGGCAGTCGTCTCCCGTAGGGCAGGCGTCTTCCGGGGCTGGGAGAGG
AGGGAGAGAGGGGGTACCGCCGGCTGGCGGGGGTAGGGGGGGCCTGGGGG
GCCTGGGCATCGAGGGGGCCAAGGTGTCGTCGTCGATGAGGGCGTTCGGG
GGAAAGATGAGGGGGATGGGGGTCAAGGCGGTGGCGATGGCGAGGATCGC
GTCGCAGGCGAGCCCGGCGGCGCACCTAAGGCTCGGCGCTGTCTCCTCTG
AGGAGAAGGTTCTTCGACAGTTCCAGATCCCGCTGCAGTTCCTGTTCCCG
GTGCACAACTCCCTCAAGCACGCCGCCCTGGCGTGGCGCACCAGGGCAAA
GAAGGAGCGGGACCGGCAGGGTCTCTTCGCGGCAGACGAGGAGGCGTTCG
CCCACGGCATGGTCGTGGTCCACGTGAGCGTCTCCAGGGCCAGGGGGCTG
GGTCCCATCGCGGCCGCGGCCGCGGCCGCGGCGGCCACCGCTGGGGCCCC
ACAGAGTGCGCCGCAGCTGCTAGGGAGTGGGGGGACCGATGCTGGTGGCG
GTGGCGCAACGTCTAACAACTCAGGGCAGTCGTCTCCCGTAGGGCAGGCG
TCTTCCGGGGCTGGGAGAGGAGGGAGAGAGGGGGTACCGCCGGCTGGCGG
GGGTAGGGGGGGCCTGGGGGGCCTGGGCATCGAGGGGGCCAAGGTGTCGT
CGTCGATGAGGGCGTTCGGGGGAAAGATGAGGGGGATGGGGGTCAAGGCG
GTGGCGATGGCGAGGATCGCGTCGCAGGCGAGCCCGGCGGCGCACCTAAG
GCTCGGCGCTGTCTCCTCTGAGGAGAAGGTTCTTCGACAGGCCAACTTCT
TCGTGAAGGTAGTCTACGGGCCCCCCTCCCTGTCTGCGATTAGCACCTCC
GACGAAGACAACTCCCCCAGTAGCGGTGGCGATGGTAGCGGTGGTGGTCT
TGCCGCGGCCGGCGAAGCGGAGAGAGTGGTTGGTGTCACCAATACGGAGT
ACGGCAGCGTGGAGCCGGTGTGGGGGACGAATGCCAACCTTAACGCCTGT
CCGTACAACGCCCCGAGGGACAAGCATCAGGCCAACTTCTTCGTGAAGGT
AGTCTACGGGCCCCCCTCCCTGTCTGCGATTAGCACCTCCGACGAAGACA
ACTCCCCCAGTAGCGGTGGCGATGGTAGCGGTGGTGGTCTTGCCGCGGCC
GGCGAAGCGGAGAGAGTGGTTGGTGTCACCAATACGGAGTACGGCAGCGT
GGAGCCGGTGTGGGGGACGAATGCCAACCTTAACGCCTGTCCGTACAACG
CCCCGAGGGACAAGCATCAGGTGTCCGGAGCTACGCGGTTAGATGTCGTC
AGCGACATTACTGTGTCCGGAGCTACGCGGTTAGATGTCGTCAGCGACAT
TACT
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