mRNA_E-fasciculatus_F_contig14924.3502.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14924.3502.1
Unique NamemRNA_E-fasciculatus_F_contig14924.3502.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14924.3502.1 vs. uniprot
Match: D8LN42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN42_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.160e-23
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:  181 REQQQRSEVGAGRALFGGFVPRRHAPAASLYDFGGKGGGAGSELGGGEXXXXXXGFAGVSSLPSIYSQ 384
            R + QRSEVGAGRALFGGFVPRRHAPAASLYDFGGKG GAGSE GGGE      GFAGVSSLPSIY+Q
Sbjct:  283 RLEHQRSEVGAGRALFGGFVPRRHAPAASLYDFGGKGQGAGSEQGGGETGRDG-GFAGVSSLPSIYNQ 349
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BLAST of mRNA_E-fasciculatus_F_contig14924.3502.1 vs. uniprot
Match: A0A6H5JSW4_9PHAE (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.090e-21
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  193 QRSEVGAGRALFGGFVPRRHAPAASLYDFGGKGGGAGSELGGGEXXXXXXGFAGVSSLPSIYSQ 384
            +RSEVGAGRALFGGFVPRRHAPAASLYDFGGKG GAGSE GGGE      GFAGVSSLPSIY+Q
Sbjct: 1196 RRSEVGAGRALFGGFVPRRHAPAASLYDFGGKGQGAGSEQGGGETGGDG-GFAGVSSLPSIYNQ 1258
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14924.3502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN42_ECTSI3.160e-2382.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSW4_9PHAE1.090e-2184.38DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14924contigE-fasciculatus_F_contig14924:441..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue9.1e-20
Seed eggNOG ortholog2880.D8LN42
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927972.8766265-CDS-E-fasciculatus_F_contig14924:440..8241622927972.8766265-CDS-E-fasciculatus_F_contig14924:440..824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14924 441..824 +
1695995773.6174052-CDS-E-fasciculatus_F_contig14924:440..8241695995773.6174052-CDS-E-fasciculatus_F_contig14924:440..824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14924 441..824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14924.3502.1prot_E-fasciculatus_F_contig14924.3502.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14924 441..824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14924.3502.1

>prot_E-fasciculatus_F_contig14924.3502.1 ID=prot_E-fasciculatus_F_contig14924.3502.1|Name=mRNA_E-fasciculatus_F_contig14924.3502.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp
PGGGPAGEASTTSTGATEPSPPASTAAAAEVAARRKEKKERNKRKSSNSG
GSTASSACPNREQQQRSEVGAGRALFGGFVPRRHAPAASLYDFGGKGGGA
GSELGGGETGGDGGGFAGVSSLPSIYSQ
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mRNA from alignment at E-fasciculatus_F_contig14924:441..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14924.3502.1 ID=mRNA_E-fasciculatus_F_contig14924.3502.1|Name=mRNA_E-fasciculatus_F_contig14924.3502.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=385bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14924:441..825+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGGCGGGGGCCCCGCAGGAGAGGCCAGCACCACGAGCACCGGAGCGAC
GGAACCCTCACCGCCAGCATCTACAGCAGCGGCGGCAGAGGTGGCGGCGA
GGAGAAAGGAGAAGAAGGAGAGGAACAAGAGAAAAAGCAGCAATTCCGGC
GGTTCCACGGCGTCGTCTGCGTGCCCCAACCGCGAGCAACAGCAGAGGTC
CGAGGTCGGAGCGGGGCGAGCGCTCTTCGGGGGATTCGTGCCTCGGAGGC
ACGCGCCAGCAGCTTCCCTGTACGACTTCGGTGGCAAGGGCGGCGGCGCT
GGGAGCGAACTGGGAGGCGGCGAAACGGGGGGAGACGGAGGAGGTTTCGC
GGGGGTGTCGTCTCTCCCGAGCATCTACAGCCAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14924:441..825+

>mRNA_E-fasciculatus_F_contig14924.3502.1 ID=mRNA_E-fasciculatus_F_contig14924.3502.1|Name=mRNA_E-fasciculatus_F_contig14924.3502.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14924:441..825+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGGCGGGGGCCCCGCAGGAGAGGCCAGCACCACGAGCACCGGAGCGAC
GGAACCCTCACCGCCAGCATCTACAGCAGCGGCGGCAGAGGTGGCGGCGA
GGAGAAAGGAGAAGAAGGAGAGGAACAAGAGAAAAAGCAGCAATTCCGGC
GGTTCCACGGCGTCGTCTGCGTGCCCCAACCGCGAGCAACAGCAGAGGTC
CGAGGTCGGAGCGGGGCGAGCGCTCTTCGGGGGATTCGTGCCTCGGAGGC
ACGCGCCAGCAGCTTCCCTGTACGACTTCGGTGGCAAGGGCGGCGGCGCT
GGGAGCGAACTGGGAGGCGGCGAAACGGGGGGAGACGGAGGAGGTTTCGC
GGGGGTGTCGTCTCTCCCGAGCATCTACAGCCAGCCGGGCGGGGGCCCCG
CAGGAGAGGCCAGCACCACGAGCACCGGAGCGACGGAACCCTCACCGCCA
GCATCTACAGCAGCGGCGGCAGAGGTGGCGGCGAGGAGAAAGGAGAAGAA
GGAGAGGAACAAGAGAAAAAGCAGCAATTCCGGCGGTTCCACGGCGTCGT
CTGCGTGCCCCAACCGCGAGCAACAGCAGAGGTCCGAGGTCGGAGCGGGG
CGAGCGCTCTTCGGGGGATTCGTGCCTCGGAGGCACGCGCCAGCAGCTTC
CCTGTACGACTTCGGTGGCAAGGGCGGCGGCGCTGGGAGCGAACTGGGAG
GCGGCGAAACGGGGGGAGACGGAGGAGGTTTCGCGGGGGTGTCGTCTCTC
CCGAGCATCTACAGCCAG
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