mRNA_E-fasciculatus_F_contig14886.3477.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14886.3477.1
Unique NamemRNA_E-fasciculatus_F_contig14886.3477.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-18
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
            PQVIITDADAAMTSSVAELMPHTKHLY SWHISKNLKRKCG
Sbjct:  930 PQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCG 970          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.950e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 PQVIITDADAAMTSSVAELMP--HTKHLYCSWHISKNLKRKC 120
            P+VIITD+DAAM  S+  + P  HT HL CSWHI KN+K+KC
Sbjct:  143 PKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKC 184          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5KXU9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.520e-9
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
            +VI+TDAD AMTS+VA +   T+HL+C WH++KNL +KC 
Sbjct:   10 KVILTDADVAMTSAVASVWKGTQHLFCLWHVNKNLVKKCA 49          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.300e-8
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
            P+VI+TDAD AMTS+V  +   T+HL+C WH++KNL +KC 
Sbjct:  371 PKVILTDADVAMTSAVPSVWKGTQHLFCLWHVNKNLVKKCA 411          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.770e-8
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
            +VI+TDAD AMTS+VA +   T+HL+C WH++KNL +KC 
Sbjct:   10 KVILTDADVAMTSAVASVWKGTQHLFCLWHVNKNLVKKCA 49          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5KC96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC96_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.500e-8
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
            +VI+TDAD AMTS+VA     T+HL+C WH++KNL +KC 
Sbjct:   10 KVILTDADVAMTSAVASDWKGTQHLFCLWHVNKNLVKKCA 49          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.590e-7
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 PQVIITDADAAMTSSVAELMPHTK-HLYCSWHISKNLKRKCG 123
            P+VIITDADA MT +V   +P T  HLYC WH+ KN+++ C 
Sbjct:  200 PEVIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCA 241          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.570e-7
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
            QVI+TDAD AMT+++A   P T HL+C WH+ KN+ + C 
Sbjct:   51 QVILTDADLAMTAAIASCWPGTLHLHCLWHVFKNVFKNCS 90          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: UPI0007EFBC1D (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFBC1D)

HSP 1 Score: 52.8 bits (125), Expect = 7.030e-7
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRK 117
            PQ IITD D A+ +++AE++P+T HLYC+WHIS     K
Sbjct:  185 PQTIITDQDIAIGNAIAEVLPNTSHLYCTWHISTKFGEK 223          
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: UPI0007EF571E (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF571E)

HSP 1 Score: 52.8 bits (125), Expect = 7.620e-7
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRK 117
            PQ IITD D A+ +++AE++P+T HLYC+WHIS     K
Sbjct:    6 PQTIITDQDIAIGNAIAEVLPNTSHLYCTWHISTKFGEK 44          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE1.200e-1897.56SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI6.950e-961.90Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5KXU9_9PHAE9.520e-957.50MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KG54_9PHAE1.300e-856.10SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JP13_9PHAE1.770e-857.50SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KC96_9PHAE8.500e-857.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ0_9PHAE1.590e-754.76SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE5.570e-752.50SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI0007EFBC1D7.030e-753.85protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Daucu... [more]
UPI0007EF571E7.620e-753.85protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Daucu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14886contigE-fasciculatus_F_contig14886:40..162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927969.4306757-CDS-E-fasciculatus_F_contig14886:39..1621622927969.4306757-CDS-E-fasciculatus_F_contig14886:39..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14886 40..162 +
1695995771.98454-CDS-E-fasciculatus_F_contig14886:39..1621695995771.98454-CDS-E-fasciculatus_F_contig14886:39..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14886 40..162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14886.3477.1prot_E-fasciculatus_F_contig14886.3477.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14886 40..162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14886.3477.1

>prot_E-fasciculatus_F_contig14886.3477.1 ID=prot_E-fasciculatus_F_contig14886.3477.1|Name=mRNA_E-fasciculatus_F_contig14886.3477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=41bp
PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG
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mRNA from alignment at E-fasciculatus_F_contig14886:40..162+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14886.3477.1 ID=mRNA_E-fasciculatus_F_contig14886.3477.1|Name=mRNA_E-fasciculatus_F_contig14886.3477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14886:40..162+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACAGGTCATCATTACAGACGCCGACGCTGCCATGACGAGTTCGGTTGC CGAACTTATGCCCCACACCAAGCATCTGTACTGCTCGTGGCATATCTCCA AGAATTTGAAGAGAAAGTGCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14886:40..162+

>mRNA_E-fasciculatus_F_contig14886.3477.1 ID=mRNA_E-fasciculatus_F_contig14886.3477.1|Name=mRNA_E-fasciculatus_F_contig14886.3477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14886:40..162+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACAGGTCATCATTACAGACGCCGACGCTGCCATGACGAGTTCGGTTGC
CGAACTTATGCCCCACACCAAGCATCTGTACTGCTCGTGGCATATCTCCA
AGAATTTGAAGAGAAAGTGCGGGCCACAGGTCATCATTACAGACGCCGAC
GCTGCCATGACGAGTTCGGTTGCCGAACTTATGCCCCACACCAAGCATCT
GTACTGCTCGTGGCATATCTCCAAGAATTTGAAGAGAAAGTGCGGG
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