mRNA_E-fasciculatus_F_contig14886.3477.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.200e-18 Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1
Query: 1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
PQVIITDADAAMTSSVAELMPHTKHLY SWHISKNLKRKCG
Sbjct: 930 PQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCG 970
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 6.950e-9 Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 1 PQVIITDADAAMTSSVAELMP--HTKHLYCSWHISKNLKRKC 120
P+VIITD+DAAM S+ + P HT HL CSWHI KN+K+KC
Sbjct: 143 PKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKC 184
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5KXU9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU9_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 9.520e-9 Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
+VI+TDAD AMTS+VA + T+HL+C WH++KNL +KC
Sbjct: 10 KVILTDADVAMTSAVASVWKGTQHLFCLWHVNKNLVKKCA 49
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.300e-8 Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
P+VI+TDAD AMTS+V + T+HL+C WH++KNL +KC
Sbjct: 371 PKVILTDADVAMTSAVPSVWKGTQHLFCLWHVNKNLVKKCA 411
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.770e-8 Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
+VI+TDAD AMTS+VA + T+HL+C WH++KNL +KC
Sbjct: 10 KVILTDADVAMTSAVASVWKGTQHLFCLWHVNKNLVKKCA 49
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5KC96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC96_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 8.500e-8 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
+VI+TDAD AMTS+VA T+HL+C WH++KNL +KC
Sbjct: 10 KVILTDADVAMTSAVASDWKGTQHLFCLWHVNKNLVKKCA 49
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 1.590e-7 Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 1 PQVIITDADAAMTSSVAELMPHTK-HLYCSWHISKNLKRKCG 123
P+VIITDADA MT +V +P T HLYC WH+ KN+++ C
Sbjct: 200 PEVIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCA 241
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 5.570e-7 Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 4 QVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCG 123
QVI+TDAD AMT+++A P T HL+C WH+ KN+ + C
Sbjct: 51 QVILTDADLAMTAAIASCWPGTLHLHCLWHVFKNVFKNCS 90
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: UPI0007EFBC1D (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFBC1D) HSP 1 Score: 52.8 bits (125), Expect = 7.030e-7 Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRK 117
PQ IITD D A+ +++AE++P+T HLYC+WHIS K
Sbjct: 185 PQTIITDQDIAIGNAIAEVLPNTSHLYCTWHISTKFGEK 223
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Match: UPI0007EF571E (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF571E) HSP 1 Score: 52.8 bits (125), Expect = 7.620e-7 Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 1 PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRK 117
PQ IITD D A+ +++AE++P+T HLYC+WHIS K
Sbjct: 6 PQTIITDQDIAIGNAIAEVLPNTSHLYCTWHISTKFGEK 44 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14886.3477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14886.3477.1 >prot_E-fasciculatus_F_contig14886.3477.1 ID=prot_E-fasciculatus_F_contig14886.3477.1|Name=mRNA_E-fasciculatus_F_contig14886.3477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=41bp PQVIITDADAAMTSSVAELMPHTKHLYCSWHISKNLKRKCGback to top mRNA from alignment at E-fasciculatus_F_contig14886:40..162+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14886.3477.1 ID=mRNA_E-fasciculatus_F_contig14886.3477.1|Name=mRNA_E-fasciculatus_F_contig14886.3477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14886:40..162+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14886:40..162+ >mRNA_E-fasciculatus_F_contig14886.3477.1 ID=mRNA_E-fasciculatus_F_contig14886.3477.1|Name=mRNA_E-fasciculatus_F_contig14886.3477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14886:40..162+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |