mRNA_E-fasciculatus_F_contig14874.3471.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14874.3471.1
Unique NamemRNA_E-fasciculatus_F_contig14874.3471.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14874.3471.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.180e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:  271 IEGNEQLVLSGNSHYGGQATFETSGSSNQAWEAAEEAIEMHTAAHLGAAGEVRLQQ 438
            IEGNEQLVLS NSHYGGQATFETSGSSNQAWEAAEEAIE+HTAAHLGAAGEVRLQQ
Sbjct:  229 IEGNEQLVLSRNSHYGGQATFETSGSSNQAWEAAEEAIELHTAAHLGAAGEVRLQQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14874.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ86_ECTSI2.180e-2496.43Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14874contigE-fasciculatus_F_contig14874:1474..3172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size441
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14874.3471.1prot_E-fasciculatus_F_contig14874.3471.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14874 1474..3172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927968.5533109-CDS-E-fasciculatus_F_contig14874:1473..15901622927968.5533109-CDS-E-fasciculatus_F_contig14874:1473..1590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14874 1474..1590 -
1695995771.6589713-CDS-E-fasciculatus_F_contig14874:1473..15901695995771.6589713-CDS-E-fasciculatus_F_contig14874:1473..1590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14874 1474..1590 -
1622927968.5650644-CDS-E-fasciculatus_F_contig14874:2113..21881622927968.5650644-CDS-E-fasciculatus_F_contig14874:2113..2188Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14874 2114..2188 -
1695995771.6741807-CDS-E-fasciculatus_F_contig14874:2113..21881695995771.6741807-CDS-E-fasciculatus_F_contig14874:2113..2188Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14874 2114..2188 -
1622927968.5757804-CDS-E-fasciculatus_F_contig14874:2923..31721622927968.5757804-CDS-E-fasciculatus_F_contig14874:2923..3172Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14874 2924..3172 -
1695995771.6865816-CDS-E-fasciculatus_F_contig14874:2923..31721695995771.6865816-CDS-E-fasciculatus_F_contig14874:2923..3172Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14874 2924..3172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14874.3471.1

>prot_E-fasciculatus_F_contig14874.3471.1 ID=prot_E-fasciculatus_F_contig14874.3471.1|Name=mRNA_E-fasciculatus_F_contig14874.3471.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=147bp
SGAIPESLGQLHSLEELFLHGNRLTGEIPPSLGNLKSLRKLFLNSNDLVG
TVPPELGRLSSLDTLNLSWNNLHGEVPASVKNLNNLQLLSIEGNEQLVLS
GNSHYGGQATFETSGSSNQAWEAAEEAIEMHTAAHLGAAGEVRLQQ*
back to top

mRNA from alignment at E-fasciculatus_F_contig14874:1474..3172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14874.3471.1 ID=mRNA_E-fasciculatus_F_contig14874.3471.1|Name=mRNA_E-fasciculatus_F_contig14874.3471.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1699bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14874:1474..3172- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGGCGCAATCCCCGAGTCGCTTGGCCAGTTGCATAGCCTTGAAGAGCT
CTTCCTGCACGGCAACCGCCTCACGGGCGAGATCCCGCCGTCCCTCGGGA
ACCTCAAGAGCCTGCGGAAGCTGTTCCTGAACTCGAACGACCTCGTCGGC
ACCGTGCCGCCGGAGCTGGGCAGGCTCTCGTCGCTCGACACGCTCAACCT
GAGCTGGAATAACCTGCACGGGGAGGTGCCCGCCAGCGTCAAGAACCTGG
TGAGCAAGGGGCCGGAAGAATCGACATTGGAAAGGGAAACCGGGTAGTCT
TTGTCTTTGTCTGTATTCTTTGGTCCATCTCTGTATGTGGGTTTTAGACA
CGGTTGTGCTTATGAGTATGGCGCGCATACGGCCTAGCGTCGTGTCCCCG
GGATTTTTGCTTGCCGAGATGCCTTCGTGGCCGTCTCGCACGCTAGTAGG
CTCACATGCAACATGTACACGCCCTGTGTCCATCGTAAAGCAGAAGGCGC
CATCGCTTAAGAACCTCATGTCGTGCACGAGGCTCGTTTTTTCTTTCCTC
GGCGACTACAAAATGTAGAATTGTTTACCTATACTCGTGGAAAAGCTCTC
AACATTCTACTTTTATTTAGCCTGAATTCCTCAAATCCTCAAATCCTTCC
GAGGGGCTCATGTGGCCATGCGTTCAGAACTGCGTGGGGACATGGCATGC
ACACCAGCGGGCTTTCTCCCCCCACACGCAGAGGAGGTTCAACCCGCATG
TGCCCGGGGGCGCGTGCCACCTCATATGTAACTCCGTGTTCGAAGCGCTA
TTGGGATTGTTTCTCACTATCCTGCTCTGGAGCGCCTGTTGCGTCTGCGC
CGCGGGTGCCCATATGCGAAGCCATATGCGTGGGGCCCGCCCACCCGCCT
GTGTGTGGTGTTATCGACCGACTGACCGGCCGTCGTTGTTGTTGCTGTCG
ACGCGTTGCTCCGCCCTGGTCGATCCTCTTGCAGAACAACCTGCAGCTGC
TGTCCATCGAGGGAAACGAGCAGCTCGTGCTGTCGGGGAATTCGCACTAC
GGCGGACAGGTGACATCGCGGAGGTTCTCCTTTTGGCTTCTGTTTTGGTT
CGCTTTTTTGCTTACAGGTTTTATGTTCCCGTTCGTGTCGCTAGCTCGTG
CCCTTCGAGAGTGCGCACTTTGGCGGCACAAGAATAGACGCAAAGACCCG
GATATCCACCCGCGCCTCTAGCTCACCCAGAGGCGCGAGATTTGACTCCA
CGAGGTCAATTGTCAACACTGAAGACATGATACATATTGTGCTCCCTGGT
GCAGGCAGGTTACAGCTTCCACGTAGTCAGCTTCTGCAAGATTTCCCTCC
GGGGTGGAGTTAAAGAGAGCACTGCGGCAGGGGTGATACAAGAACATGAA
AAAAGCAAACGGAAGAAGAACAGATATTTTATCTACGTAGGACTGTTAGA
AAAAACCGACAGCCCGAAGACGAATGATCAGTACGAACATAGTATTTTTT
GAGTGAGAAAATATTTACAAAACGGTGCACTGTTTGACAACGACTGCTGT
ACAAAACATGTGCCGCCCGCCCTTGTTTTCAGGCGACGTTCGAGACGAGC
GGGTCGTCGAACCAAGCCTGGGAGGCCGCCGAGGAGGCGATAGAGATGCA
CACCGCCGCGCACTTGGGGGCCGCCGGCGAGGTACGGCTCCAGCAATAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14874:1474..3172-

>mRNA_E-fasciculatus_F_contig14874.3471.1 ID=mRNA_E-fasciculatus_F_contig14874.3471.1|Name=mRNA_E-fasciculatus_F_contig14874.3471.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=882bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14874:1474..3172- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGGCGCAATCCCCGAGTCGCTTGGCCAGTTGCATAGCCTTGAAGAGCT
CTTCCTGCACGGCAACCGCCTCACGGGCGAGATCCCGCCGTCCCTCGGGA
ACCTCAAGAGCCTGCGGAAGCTGTTCCTGAACTCGAACGACCTCGTCGGC
ACCGTGCCGCCGGAGCTGGGCAGGCTCTCGTCGCTCGACACGCTCAACCT
GAGCTGGAATAACCTGCACGGGGAGGTGCCCGCCAGCGTCAAGAACCTGT
CAGGCGCAATCCCCGAGTCGCTTGGCCAGTTGCATAGCCTTGAAGAGCTC
TTCCTGCACGGCAACCGCCTCACGGGCGAGATCCCGCCGTCCCTCGGGAA
CCTCAAGAGCCTGCGGAAGCTGTTCCTGAACTCGAACGACCTCGTCGGCA
CCGTGCCGCCGGAGCTGGGCAGGCTCTCGTCGCTCGACACGCTCAACCTG
AGCTGGAATAACCTGCACGGGGAGGTGCCCGCCAGCGTCAAGAACCTGAA
CAACCTGCAGCTGCTGTCCATCGAGGGAAACGAGCAGCTCGTGCTGTCGG
GGAATTCGCACTACGGCGGACAGAACAACCTGCAGCTGCTGTCCATCGAG
GGAAACGAGCAGCTCGTGCTGTCGGGGAATTCGCACTACGGCGGACAGGC
GACGTTCGAGACGAGCGGGTCGTCGAACCAAGCCTGGGAGGCCGCCGAGG
AGGCGATAGAGATGCACACCGCCGCGCACTTGGGGGCCGCCGGCGAGGTA
CGGCTCCAGCAATAAGCGACGTTCGAGACGAGCGGGTCGTCGAACCAAGC
CTGGGAGGCCGCCGAGGAGGCGATAGAGATGCACACCGCCGCGCACTTGG
GGGCCGCCGGCGAGGTACGGCTCCAGCAATAA
back to top