mRNA_E-fasciculatus_F_contig14858.3461.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14858.3461.1
Unique NamemRNA_E-fasciculatus_F_contig14858.3461.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: D7FN92_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN92_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 4.360e-57
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE
Sbjct: 1170 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 1269
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.520e-56
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIA DHPFNPHVYLKSALTAE
Sbjct: 1300 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAGDHPFNPHVYLKSALTAE 1399
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A835ZBG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG5_9STRA)

HSP 1 Score: 167 bits (423), Expect = 6.490e-48
Identity = 82/100 (82.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            DL  V DS+KYC FLLDAEVTDSAL ALSKEILSDKG LPVGEIGKLLQE TANA LSQTLKDQFGGLKKFLEK+P +F+I++DHPFNPHVYLKSA++ E
Sbjct:  103 DLDKVWDSIKYCSFLLDAEVTDSALFALSKEILSDKGPLPVGEIGKLLQEFTANAGLSQTLKDQFGGLKKFLEKFPEDFLISSDHPFNPHVYLKSAMSEE 202
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A7S3Y5A1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5A1_HETAK)

HSP 1 Score: 142 bits (357), Expect = 2.480e-41
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:   22 SVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            S++YC FLL AEVT SAL AL+ E+L ++G LPVGEIGKLLQEATANA+LS TLKDQFGGLKKFLEKYP +F+I+ DHPFNPHVYLK  L+ E
Sbjct:   23 SLRYCAFLLAAEVTASALRALAAEVLGNRGPLPVGEIGKLLQEATANAALSATLKDQFGGLKKFLEKYPDDFLISTDHPFNPHVYLKHNLSEE 115
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A7S1CD26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD26_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.130e-33
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSAL 291
            D  +V  SV+YC  LLDAEVT  ALLAL+ EIL  +G LPVGEIGKLLQEAT+N +LS  LK++FGGLKKFLE +P  FV+   H FNP VYL+++L
Sbjct:    5 DAAAVEASVEYCGLLLDAEVTAPALLALTSEILWRRGRLPVGEIGKLLQEATSNPALSGALKERFGGLKKFLESFPDHFVLGRSHRFNPLVYLRASL 101
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A067CJD5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CJD5_SAPPC)

HSP 1 Score: 114 bits (285), Expect = 2.520e-29
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            D  ++R  V  C FLL+  VT  A+   +  IL++KG LP+GEIGK LQ+ATAN++LS  LK+QFGGLKKFLE+YP +F+I+ DHPFNP VY++S L  E
Sbjct:   82 DEDALRCHVLMCDFLLNGHVTPHAVFTKTVAILNEKGPLPIGEIGKCLQDATANSTLSVALKEQFGGLKKFLEQYPADFLISDDHPFNPKVYVQSHLLDE 181
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A1V9YRJ5_9STRA (Radical SAM core domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRJ5_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.610e-29
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            D +S+R  V  C FLL   VT  A+ + + +IL++KG LP+GEIGK LQ+ATANA+LS  LK+QFGGLKKFLE+YP +F+I+ DHPFNP VY++S L  E
Sbjct:  858 DEESLRCQVLMCDFLLQGHVTPHAVFSKTVDILNEKGPLPIGEIGKCLQDATANATLSVALKEQFGGLKKFLEQYPNDFIISDDHPFNPKVYVQSHLLDE 957
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A1V9YQK8_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YQK8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.310e-28
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            D  ++R  V  C FLL   VT  A+   + +IL++KG LP+GEIGK LQ+ATAN +LS TLK+QFGGLKKFLE+YP +F+I+ DHP+NP VY++S L  E
Sbjct:  827 DEDALRGQVLVCDFLLQGHVTPHAVFTKTVDILNEKGPLPIGEIGKCLQDATANTALSVTLKEQFGGLKKFLEQYPCDFIISDDHPYNPKVYVQSHLLDE 926
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: A0A7S2RYJ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYJ2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.390e-28
Identity = 49/68 (72.06%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   94 ILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTA 297
            ILSDKG+LPVGEIGKLLQE T N++LS  LKD+FGGLKKFLEKY  +F++++DHPFNPHVYL+S ++A
Sbjct:    1 ILSDKGALPVGEIGKLLQETTENSNLSAILKDKFGGLKKFLEKYSEDFLVSSDHPFNPHVYLRSGISA 68
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BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Match: T0RWT5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RWT5_SAPDV)

HSP 1 Score: 114 bits (286), Expect = 1.460e-27
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQEATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE 300
            D  ++R  V  C FLL   VT  A+   +  IL++KG LP+GEIGK LQ+ATAN++LS  LK+QFGGLKKFLE+YP +F+I+ DHPFNP VY++S L  E
Sbjct:  834 DEDALRCHVLMCDFLLQGHVTPHAVFTKTVAILNEKGPLPIGEIGKCLQDATANSTLSVALKEQFGGLKKFLEQYPADFIISDDHPFNPKVYVQSHLLDE 933
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14858.3461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FN92_ECTSI4.360e-57100.00Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
A0A6H5KVP2_9PHAE1.520e-5699.00PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835ZBG5_9STRA6.490e-4882.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y5A1_HETAK2.480e-4174.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1CD26_9STRA5.130e-3362.89Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A067CJD5_SAPPC2.520e-2956.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9YRJ5_9STRA2.610e-2958.00Radical SAM core domain-containing protein n=1 Tax... [more]
A0A1V9YQK8_9STRA4.310e-2856.00Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
A0A7S2RYJ2_9STRA4.390e-2872.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
T0RWT5_SAPDV1.460e-2756.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14858contigE-fasciculatus_F_contig14858:224..1008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.1
Seed ortholog evalue9.5e-49
Seed eggNOG ortholog2880.D7FN92
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14858.3461.1prot_E-fasciculatus_F_contig14858.3461.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14858 224..1008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927967.2194088-CDS-E-fasciculatus_F_contig14858:223..3311622927967.2194088-CDS-E-fasciculatus_F_contig14858:223..331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14858 224..331 +
1695995771.0371215-CDS-E-fasciculatus_F_contig14858:223..3311695995771.0371215-CDS-E-fasciculatus_F_contig14858:223..331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14858 224..331 +
1622927967.24098-CDS-E-fasciculatus_F_contig14858:601..7151622927967.24098-CDS-E-fasciculatus_F_contig14858:601..715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14858 602..715 +
1695995771.0550835-CDS-E-fasciculatus_F_contig14858:601..7151695995771.0550835-CDS-E-fasciculatus_F_contig14858:601..715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14858 602..715 +
1622927967.2559063-CDS-E-fasciculatus_F_contig14858:930..10081622927967.2559063-CDS-E-fasciculatus_F_contig14858:930..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14858 931..1008 +
1695995771.06855-CDS-E-fasciculatus_F_contig14858:930..10081695995771.06855-CDS-E-fasciculatus_F_contig14858:930..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14858 931..1008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14858.3461.1

>prot_E-fasciculatus_F_contig14858.3461.1 ID=prot_E-fasciculatus_F_contig14858.3461.1|Name=mRNA_E-fasciculatus_F_contig14858.3461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
DLQSVRDSVKYCCFLLDAEVTDSALLALSKEILSDKGSLPVGEIGKLLQE
ATANASLSQTLKDQFGGLKKFLEKYPGEFVIAADHPFNPHVYLKSALTAE
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mRNA from alignment at E-fasciculatus_F_contig14858:224..1008+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14858.3461.1 ID=mRNA_E-fasciculatus_F_contig14858.3461.1|Name=mRNA_E-fasciculatus_F_contig14858.3461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=785bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14858:224..1008+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCTCCAGAGCGTGCGTGACTCTGTGAAGTACTGCTGCTTCCTTCTCGA
TGCGGAGGTGACCGACAGCGCGCTGCTAGCCCTGTCGAAGGAGATCCTCT
CCGACAAGGTACGAAGGCAGAGATTGCAAATAGAGAGGGAGAGAGAGAGA
GAGAAATGCACCAGCCAGCGCTCGAATGTTTTCGTTTTTCGTATCATGTC
GTGGGAATTATCCTTCTTTTGAACGAAACGCGCAAATAGACCTATTTACG
TCTGACACTATTTTTGTCGCCCAACGATTTTTTCCACTACTATAGTGATT
CGTTCGTCGGTTGGTGTACTTATTTATTTTTTTGCGTTGGTCTGCATGTC
GTGCCGAAACGTCACATTCTTTCCCCAGGGCTCCTTGCCGGTGGGTGAGA
TCGGCAAGCTCCTGCAGGAAGCCACGGCCAACGCCTCCCTCAGCCAGACC
CTCAAGGACCAGTTCGGAGGCCTCAAGAAGTTCCTCGAGAAGGTATGTAC
CGTAGGCTCAACGAACAGCGGTCAGGGTCACCACTAACTTGAGGCTGGTA
TGGGGCAGGTTTGAGCAAAGTTTTTATTTTATTTTATTTAGCGCGCGATT
GATCACGCTACACGCCCTTCTATTTTGTCAGCATCGCATAGTCAGGATGC
ACTCGCGACCAACGCCCCATCCCGCCACCCTCTCCCGCGTGCCATTCTTG
CCAACAGTACCCGGGCGAGTTCGTGATAGCTGCAGACCATCCCTTCAACC
CGCACGTGTACCTCAAGTCCGCGCTCACCGCCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14858:224..1008+

>mRNA_E-fasciculatus_F_contig14858.3461.1 ID=mRNA_E-fasciculatus_F_contig14858.3461.1|Name=mRNA_E-fasciculatus_F_contig14858.3461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14858:224..1008+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCTCCAGAGCGTGCGTGACTCTGTGAAGTACTGCTGCTTCCTTCTCGA
TGCGGAGGTGACCGACAGCGCGCTGCTAGCCCTGTCGAAGGAGATCCTCT
CCGACAAGGACCTCCAGAGCGTGCGTGACTCTGTGAAGTACTGCTGCTTC
CTTCTCGATGCGGAGGTGACCGACAGCGCGCTGCTAGCCCTGTCGAAGGA
GATCCTCTCCGACAAGGGCTCCTTGCCGGTGGGTGAGATCGGCAAGCTCC
TGCAGGAAGCCACGGCCAACGCCTCCCTCAGCCAGACCCTCAAGGACCAG
TTCGGAGGCCTCAAGAAGTTCCTCGAGAAGGGCTCCTTGCCGGTGGGTGA
GATCGGCAAGCTCCTGCAGGAAGCCACGGCCAACGCCTCCCTCAGCCAGA
CCCTCAAGGACCAGTTCGGAGGCCTCAAGAAGTTCCTCGAGAAGTACCCG
GGCGAGTTCGTGATAGCTGCAGACCATCCCTTCAACCCGCACGTGTACCT
CAAGTCCGCGCTCACCGCCGAGTACCCGGGCGAGTTCGTGATAGCTGCAG
ACCATCCCTTCAACCCGCACGTGTACCTCAAGTCCGCGCTCACCGCCGAG
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