mRNA_E-fasciculatus_F_contig14839.3450.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14839.3450.1
Unique NamemRNA_E-fasciculatus_F_contig14839.3450.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14839.3450.1 vs. uniprot
Match: D7FN35_ECTSI (Chorein N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN35_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.850e-113
Identity = 186/200 (93.00%), Postives = 193/200 (96.50%), Query Frame = 1 
Query:    7 QARQVLWWELRVGNVALRDLCSSWGDGAKTGGGGAAAPAVAKTLMSGSASGVDGREWVSGGDPTGAASRCFLVLRIVHDPNRAACGLFNSSAAAMAQLRAHVVVGCVTGKIPPQVLAVFNAAARDIVINEKKTNAGMTPKHPRVSASDGDSDSAARQLRVALGSVHRALLGKRSVMFRPKKRKGPSAAVRALSMARGATR 606
            +ARQVLWWELRVGNVALRDLCSSWGDGAK GG GAAAP VAKTLMSGSASGVDGR+WVS GDPTGAASRCFLV+R+VHDPNRAACGLF+SSAAAMAQLRAHVVVGCVTGKIPPQVLA+FNAAARDIVINEKKTNAGMTP+HPR SAS GDSDSAARQLRV LGSVHRALLGKRSVMFRPKKRKGPSAAVRALSMARGATR
Sbjct:  879 EARQVLWWELRVGNVALRDLCSSWGDGAKNGGPGAAAPPVAKTLMSGSASGVDGRDWVSAGDPTGAASRCFLVVRVVHDPNRAACGLFSSSAAAMAQLRAHVVVGCVTGKIPPQVLAIFNAAARDIVINEKKTNAGMTPQHPRASASGGDSDSAARQLRVVLGSVHRALLGKRSVMFRPKKRKGPSAAVRALSMARGATR 1078
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BLAST of mRNA_E-fasciculatus_F_contig14839.3450.1 vs. uniprot
Match: A0A6H5KF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF13_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 3.100e-110
Identity = 175/197 (88.83%), Postives = 184/197 (93.40%), Query Frame = 1 
Query:   16 QVLWWELRVGNVALRDLCSSWGDGAKTGGGGAAAPAVAKTLMSGSASGVDGREWVSGGDPTGAASRCFLVLRIVHDPNRAACGLFNSSAAAMAQLRAHVVVGCVTGKIPPQVLAVFNAAARDIVINEKKTNAGMTPKHPRVSASDGDSDSAARQLRVALGSVHRALLGKRSVMFRPKKRKGPSAAVRALSMARGATR 606
            +VLWWELRVGNV LRDLCSSWGDGAK GG GAAAP  AKTLMSGSASGVDGR+WVS GDPTGAASRCFLV+R+VHDPNRAACGLF+SSAA MAQLRAHVVVGCVTGKIPPQVLA+FNAAAR+IVINEKKTNAGMTP+HP  S S GDSDSAARQLRV L SVHRALLG+RSVMFRPKKRKGPSAAVRALSMARGATR
Sbjct:  276 EVLWWELRVGNVTLRDLCSSWGDGAKNGGTGAAAPPAAKTLMSGSASGVDGRDWVSAGDPTGAASRCFLVVRMVHDPNRAACGLFSSSAAPMAQLRAHVVVGCVTGKIPPQVLAIFNAAAREIVINEKKTNAGMTPQHPGASDSGGDSDSAARQLRVVLESVHRALLGQRSVMFRPKKRKGPSAAVRALSMARGATR 472
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14839.3450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN35_ECTSI1.850e-11393.00Chorein N-terminal domain-containing protein n=1 T... [more]
A0A6H5KF13_9PHAE3.100e-11088.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14839contigE-fasciculatus_F_contig14839:41..1820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size606
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14839.3450.1prot_E-fasciculatus_F_contig14839.3450.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14839 41..1820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927965.583001-CDS-E-fasciculatus_F_contig14839:40..2521622927965.583001-CDS-E-fasciculatus_F_contig14839:40..252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14839 41..252 +
1695995770.4479399-CDS-E-fasciculatus_F_contig14839:40..2521695995770.4479399-CDS-E-fasciculatus_F_contig14839:40..252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14839 41..252 +
1622927965.5939603-CDS-E-fasciculatus_F_contig14839:1000..11241622927965.5939603-CDS-E-fasciculatus_F_contig14839:1000..1124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14839 1001..1124 +
1695995770.4866376-CDS-E-fasciculatus_F_contig14839:1000..11241695995770.4866376-CDS-E-fasciculatus_F_contig14839:1000..1124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14839 1001..1124 +
1622927965.6070828-CDS-E-fasciculatus_F_contig14839:1550..18201622927965.6070828-CDS-E-fasciculatus_F_contig14839:1550..1820Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14839 1551..1820 +
1695995770.4999032-CDS-E-fasciculatus_F_contig14839:1550..18201695995770.4999032-CDS-E-fasciculatus_F_contig14839:1550..1820Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14839 1551..1820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14839.3450.1

>prot_E-fasciculatus_F_contig14839.3450.1 ID=prot_E-fasciculatus_F_contig14839.3450.1|Name=mRNA_E-fasciculatus_F_contig14839.3450.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp
MRQARQVLWWELRVGNVALRDLCSSWGDGAKTGGGGAAAPAVAKTLMSGS
ASGVDGREWVSGGDPTGAASRCFLVLRIVHDPNRAACGLFNSSAAAMAQL
RAHVVVGCVTGKIPPQVLAVFNAAARDIVINEKKTNAGMTPKHPRVSASD
GDSDSAARQLRVALGSVHRALLGKRSVMFRPKKRKGPSAAVRALSMARGA
TR
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mRNA from alignment at E-fasciculatus_F_contig14839:41..1820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14839.3450.1 ID=mRNA_E-fasciculatus_F_contig14839.3450.1|Name=mRNA_E-fasciculatus_F_contig14839.3450.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14839:41..1820+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGCAGGCGCGGCAGGTGCTCTGGTGGGAGCTCCGCGTGGGCAACGT
GGCCCTTCGCGACCTCTGTAGCTCCTGGGGGGACGGTGCCAAGACTGGGG
GGGGGGGTGCGGCAGCGCCAGCTGTCGCGAAAACCCTCATGTCTGGATCC
GCCTCGGGAGTGGATGGGCGGGAATGGGTGTCGGGCGGTGATCCCACGGG
TGCTGCCTCAAGGTGATTTTTTCTTTTTCCGGGGCGGTACGTTTTTCTGA
TGGTTTGGATGGAATATACATACCCTTGCGCTGTGGGTCGGGTCGTTTGC
TAATTCATTTGAGAAAGAACGAGGTGGCTTCTTTTTGAGGTACTTGGGTT
TCCAGTTTTCAGTGGCACTGTTGGGGGGGCGAGAGCGAGAGCGTGAGTNN
NNNNNNNNAGCTATAGTGGCAGGTCTTGATTAGGTGTAGGCCTCCGCAGT
GCCGTTTGAATGGTACATATACCCGGCATGGTATCGACATGAGTGTCCAC
TCCTGTAACTAGAATAGAACCTTACTTCCTGTTCTGAGGAGTGCCGGTGG
ACTGAGCGTCCTCTTTTGTTTGCGTTCCTTCATCTACGTTTCTCACAAGC
GGATGTATTCTGTACGATGGGGTACTCACACCCCATGTTGTTGGTACTAG
GTTCTGTACGCGAGCTGTGCCACACACACATGTATGTTTGGGTGCCCTAC
GACGTGTGTACCGTGCCTAGGTTCTGCAGGTGTGTTCCGCAACGTTCTCG
AGCAACCACCGACGCAGAGCTTCAATAAAGAAATAACAAAAACGAAAGAA
AACGACGTCGGCTCCTACCTACCCCTTGTGACGCCCATGTCTATTTCTTT
TCGTGCGAATATCACGAATGAACCCAGGTGTCTAATATTTTGTTTGAATA
TCACAGATCGAACCTAGGTGGTTTTAATTTTGTTTGTTTGAATATCATGG
ATGAACTCAGGTGTTTCCTCGTGCTGAGGATCGTGCACGACCCAAACCGT
GCGGCGTGCGGGCTGTTCAACAGCTCCGCGGCGGCCATGGCCCAGCTGCG
GGCCCACGTTGTGGTCGGATGCGTTACGGGCAAGGTGCGATTTTGTTTTT
TCCGGTTCTGGTTTTCTTGGTTGGAAATTCGTGCGTGGTCGGTTGTAATG
CAGGAAAAATGCCATTTCAACGAGGAATCCGCCCAATTGGACAACGGCAA
ACAACGTCTATATATCTGGTTGGTGGGTAGCGAAGTCATGTCCGCAAAGG
TGAGAACGAACGACTCTCTCTCAAGAATTCTTCCTTTCATGAGAATTTTG
TTTTGTTGCATGGCTTCGTTTTATTTACGCATTTGCGGTCGCTGGTAGTC
AGCATACAGGAGGCGCTGCCACCCTCAAGACCCGCGGGTTTCCTAAATCC
TCGCAGCTCATCTTCCCTGCGAGGAAACAAGCCAACAGAGGATGTGAAGG
TTTAGAGAGTGGGGTACAACGACATTCATACCCCGCCCCCTCCTAAATGA
CATTTCGCAGATCCCTCCCCAAGTACTCGCGGTGTTCAACGCCGCCGCGC
GCGACATCGTCATCAACGAGAAAAAGACGAACGCGGGGATGACTCCTAAA
CATCCCCGGGTTTCCGCTAGCGACGGCGACAGCGACTCCGCCGCCCGGCA
GCTCCGCGTGGCCTTGGGATCGGTGCACCGGGCGCTGCTGGGGAAGCGGT
CCGTCATGTTCAGGCCCAAGAAAAGGAAGGGTCCCAGCGCTGCGGTCCGC
GCCCTGTCGATGGCCAGGGGAGCCACAAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14839:41..1820+

>mRNA_E-fasciculatus_F_contig14839.3450.1 ID=mRNA_E-fasciculatus_F_contig14839.3450.1|Name=mRNA_E-fasciculatus_F_contig14839.3450.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14839:41..1820+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGCAGGCGCGGCAGGTGCTCTGGTGGGAGCTCCGCGTGGGCAACGT
GGCCCTTCGCGACCTCTGTAGCTCCTGGGGGGACGGTGCCAAGACTGGGG
GGGGGGGTGCGGCAGCGCCAGCTGTCGCGAAAACCCTCATGTCTGGATCC
GCCTCGGGAGTGGATGGGCGGGAATGGGTGTCGGGCGGTGATCCCACGGG
TGCTGCCTCAAGATGCGGCAGGCGCGGCAGGTGCTCTGGTGGGAGCTCCG
CGTGGGCAACGTGGCCCTTCGCGACCTCTGTAGCTCCTGGGGGGACGGTG
CCAAGACTGGGGGGGGGGGTGCGGCAGCGCCAGCTGTCGCGAAAACCCTC
ATGTCTGGATCCGCCTCGGGAGTGGATGGGCGGGAATGGGTGTCGGGCGG
TGATCCCACGGGTGCTGCCTCAAGGTGTTTCCTCGTGCTGAGGATCGTGC
ACGACCCAAACCGTGCGGCGTGCGGGCTGTTCAACAGCTCCGCGGCGGCC
ATGGCCCAGCTGCGGGCCCACGTTGTGGTCGGATGCGTTACGGGCAAGGT
GTTTCCTCGTGCTGAGGATCGTGCACGACCCAAACCGTGCGGCGTGCGGG
CTGTTCAACAGCTCCGCGGCGGCCATGGCCCAGCTGCGGGCCCACGTTGT
GGTCGGATGCGTTACGGGCAAGATCCCTCCCCAAGTACTCGCGGTGTTCA
ACGCCGCCGCGCGCGACATCGTCATCAACGAGAAAAAGACGAACGCGGGG
ATGACTCCTAAACATCCCCGGGTTTCCGCTAGCGACGGCGACAGCGACTC
CGCCGCCCGGCAGCTCCGCGTGGCCTTGGGATCGGTGCACCGGGCGCTGC
TGGGGAAGCGGTCCGTCATGTTCAGGCCCAAGAAAAGGAAGGGTCCCAGC
GCTGCGGTCCGCGCCCTGTCGATGGCCAGGGGAGCCACAAGGATCCCTCC
CCAAGTACTCGCGGTGTTCAACGCCGCCGCGCGCGACATCGTCATCAACG
AGAAAAAGACGAACGCGGGGATGACTCCTAAACATCCCCGGGTTTCCGCT
AGCGACGGCGACAGCGACTCCGCCGCCCGGCAGCTCCGCGTGGCCTTGGG
ATCGGTGCACCGGGCGCTGCTGGGGAAGCGGTCCGTCATGTTCAGGCCCA
AGAAAAGGAAGGGTCCCAGCGCTGCGGTCCGCGCCCTGTCGATGGCCAGG
GGAGCCACAAGG
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