mRNA_E-fasciculatus_F_contig1479.3419.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1479.3419.1
Unique NamemRNA_E-fasciculatus_F_contig1479.3419.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1479.3419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1479contigE-fasciculatus_F_contig1479:425..2011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927961.8345237-CDS-E-fasciculatus_F_contig1479:425..4681622927961.8345237-CDS-E-fasciculatus_F_contig1479:425..468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 426..468 -
1695995768.6926193-CDS-E-fasciculatus_F_contig1479:425..4681695995768.6926193-CDS-E-fasciculatus_F_contig1479:425..468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 426..468 -
1622927961.854051-CDS-E-fasciculatus_F_contig1479:1730..20111622927961.854051-CDS-E-fasciculatus_F_contig1479:1730..2011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 1731..2011 -
1695995768.7022645-CDS-E-fasciculatus_F_contig1479:1730..20111695995768.7022645-CDS-E-fasciculatus_F_contig1479:1730..2011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 1731..2011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1479.3419.1prot_E-fasciculatus_F_contig1479.3419.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1479 426..2011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1479.3419.1

>prot_E-fasciculatus_F_contig1479.3419.1 ID=prot_E-fasciculatus_F_contig1479.3419.1|Name=mRNA_E-fasciculatus_F_contig1479.3419.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
RLCQLSDSCACCVFPAEPDAQWWAGLDKSYPTVAVNGKLQVVGTGSATFA
RRVKSPGPAGGDPGQQSVLGFVAAGIAGCGAKPCRTYWSLRSSSPFMRGT
WRRECPGG
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mRNA from alignment at E-fasciculatus_F_contig1479:425..2011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1479.3419.1 ID=mRNA_E-fasciculatus_F_contig1479.3419.1|Name=mRNA_E-fasciculatus_F_contig1479.3419.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1587bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1479:425..2011- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCTCTGTCAGCTCAGTGACTCTTGTGCCTGCTGTGTCTTTCCAGCAGA
GCCTGATGCCCAATGGTGGGCTGGTCTCGATAAGAGTTATCCAACGGTTG
CCGTGAACGGCAAACTGCAGGTTGTGGGAACGGGCAGTGCAACATTCGCA
AGGAGAGTCAAATCGCCAGGGCCAGCAGGCGGTGATCCAGGGCAACAAAG
CGTTTTGGGGTTCGTGGCAGCAGGAATCGCGGGGTGTGGGGCAAAGCCAT
GTCGAACTTACTGGTCCCTCCGGAGCTCAAGGTATGGGGCGCCTTCGATA
GATACACAGTAGAGATGAAGTCCCATTGCAAGGACGTTTTGTCTATTCTC
GATTGCCGTTCACGCCTGCTGGATCATACCCACGATTATGTCGGTTGGGT
TCGTTACTGAGGGCGCTCTCCAGGACGGGATAAAAATTGCAGGCATACAA
AGAAAGCTGTAGCGCTGCTATGTTGGCTTCGAGACGTTCAGAACTGTGGG
CTCTCGGAAGGTGCCCTGCGCCTCTATGGCCGGCTGTTGTCGGCACAGGA
CCAGATGTTTGCACGCGGCAGTCCCTGGTTGCTGTATACAGGAAATACAC
ACAAACATTTTTTTGAAAATCACCCACACACACGTGGGAAAAAAAGAAAA
AAACAAACGCCGGAGAGGGGAGGACGCAGGATCTGCCGTCCTCGAAACGC
CGTCGTTGTGGTCAGTGCAGGGCGCAGGGTGATGGCCGTGTTTCCTTCTG
GTCACGTCCAACAACAGTAGGGCAGCAGCAGTGCTGAGCACATGGCGAAA
CCACGTTTCGTGGAGCCTAGTCCTACTCCTCCTCATGATAACCAACAAAA
AATTCCGCTACAAGTAGCCTACAAAGAAGGCAGCAGCAGCAGCTATGTAG
CAGTGACTTGCAAACATGGCAATGCACAAGGCGTTTCCAGACACAAAAGA
GAGCTTCCATGTTCCTCAACCAACCAACCAACGGGGGGGTATTCTCGATT
CGCAGCGCTGTTTGGTTGAAAGACGCGGTGCAGGAAGTCGCCCAGATGCA
CCATGGAGGTTAGTTGGGCGTCCGAAGCCAGCCTACTGTCTTTTCGTCTT
TTCGTCCTGTCTCTCGTTGTTGTACAATTTGAAGTCCTATTGGCGTGCTT
GGTTTGATGATTAATTCAAGATAGGTACATGTTAGACTGCACGGACATCA
TGCACTGGTGTAGGTGGTACACCAGTACCTTCTGCTCCCCCTCGGCCCCC
CCGGCACGTGGAGGCGCTCGGGTGCAACCTGAACTCGCCAACACACAAGC
CGTTCTGTTGTACCCTACGCGTGCCTGTCTACCTGCCTGCCCTCATTTTC
GTGCTGCAGGAATGCAGGTCCAGCTTGCTACACATATTGTACCCCATTTT
TTGTGTGGACTAGATATAGAGCTTACGTGAGAAAAAAGAAAAGAAAAACA
TACCCCGCTGCTACAGACGTTTTTCCAAACCACACGCCACAACACCCAAC
CCCATTGTGCGCATGGCACCAATGAACAATATGCCCTCAACAGCCCCTTC
ATGAGGGGTACCTGGCGGAGGGAGTGCCCGGGTGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1479:425..2011-

>mRNA_E-fasciculatus_F_contig1479.3419.1 ID=mRNA_E-fasciculatus_F_contig1479.3419.1|Name=mRNA_E-fasciculatus_F_contig1479.3419.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1479:425..2011- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCTCTGTCAGCTCAGTGACTCTTGTGCCTGCTGTGTCTTTCCAGCAGA
GCCTGATGCCCAATGGTGGGCTGGTCTCGATAAGAGTTATCCAACGGTTG
CCGTGAACGGCAAACTGCAGGTTGTGGGAACGGGCAGTGCAACATTCGCA
AGGAGAGTCAAATCGCCAGGGCCAGCAGGCGGTGATCCAGGGCAACAAAG
CGTTTTGGGGTTCGTGGCAGCAGGAATCGCGGGGTGTGGGGCAAAGCCAT
GTCGAACTTACTGGTCCCTCCGGAGCTCAAGCGGCTCTGTCAGCTCAGTG
ACTCTTGTGCCTGCTGTGTCTTTCCAGCAGAGCCTGATGCCCAATGGTGG
GCTGGTCTCGATAAGAGTTATCCAACGGTTGCCGTGAACGGCAAACTGCA
GGTTGTGGGAACGGGCAGTGCAACATTCGCAAGGAGAGTCAAATCGCCAG
GGCCAGCAGGCGGTGATCCAGGGCAACAAAGCGTTTTGGGGTTCGTGGCA
GCAGGAATCGCGGGGTGTGGGGCAAAGCCATGTCGAACTTACTGGTCCCT
CCGGAGCTCAAGCCCCTTCATGAGGGGTACCTGGCGGAGGGAGTGCCCGG
GTGGGCCCCTTCATGAGGGGTACCTGGCGGAGGGAGTGCCCGGGTGGG
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