mRNA_E-fasciculatus_F_contig14717.3379.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14717.3379.1
Unique NamemRNA_E-fasciculatus_F_contig14717.3379.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: W7TJY5_9STRA (Phospholipid-translocating P-type atpase domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJY5_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.480e-37
Identity = 59/88 (67.05%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:   10 KFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            K   +C++ V CR+SPDQKR +VHL+K+N P  R L++GDGANDVPMIQ AHVGVGI+G EG+QAVNASDY+++QFRFL+ LLL HGR
Sbjct:  129 KLTRICKSVVACRVSPDQKRSIVHLVKNNEPACRALSIGDGANDVPMIQEAHVGVGIAGMEGMQAVNASDYAISQFRFLRSLLLAHGR 216
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: A0A6A4E1R7_9STRA (Phospholipid-transporting ATPase n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E1R7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 8.560e-36
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            L  K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR
Sbjct:  936 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEVRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGR 1026
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: A0A3M6VIT6_9STRA (Phospholipid-transporting ATPase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIT6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.170e-35
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            LF K A  C A + CR+SP QK QLV L++DNNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQF+FL +LLL HGR
Sbjct:  770 LFLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPKIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFKFLSRLLLVHGR 860
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: W2HMC0_PHYPR (Phospholipid-transporting ATPase n=14 Tax=Phytophthora TaxID=4783 RepID=W2HMC0_PHYPR)

HSP 1 Score: 137 bits (345), Expect = 1.170e-35
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            L  K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR
Sbjct:  925 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEMRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGR 1015
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: H3GP37_PHYRM (Phospholipid-transporting ATPase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP37_PHYRM)

HSP 1 Score: 137 bits (345), Expect = 1.170e-35
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            L  K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR
Sbjct:  924 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGR 1014
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: M4BJ26_HYAAE (Phospholipid-transporting ATPase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJ26_HYAAE)

HSP 1 Score: 136 bits (343), Expect = 2.150e-35
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            LF K A  C A + CR+SP QK QLV L+++NNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR
Sbjct:  455 LFLKVAEKCVAVIACRVSPAQKAQLVRLVRENNPGMRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLARLLLVHGR 545
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: A0A2P4Y8V4_9STRA (Phospholipid-transporting ATPase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8V4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.440e-35
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            L  K A  C A + CR+SP QK QLV L++DNNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR
Sbjct:  261 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPKIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGR 351
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: A0A225W7A7_9STRA (Phospholipid-transporting ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W7A7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.960e-35
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            L  K A  C A + CR+SP QK QLV L++DNNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR
Sbjct:  904 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPKIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGR 994
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.980e-35
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    4 FFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            F + A  C+A V CR+SPDQKR +V L+++  P+ARTLA+GDGANDV MIQAAH+GVGISGQEG+QAVNASD+++AQFRFLQKL+L HGR
Sbjct:  990 FAELAMECEAVVCCRVSPDQKRAVVALVRERRPEARTLAIGDGANDVAMIQAAHIGVGISGQEGMQAVNASDFAIAQFRFLQKLMLFHGR 1079
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BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Match: D0NQA7_PHYIT (Phospholipid-transporting ATPase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NQA7_PHYIT)

HSP 1 Score: 135 bits (341), Expect = 4.050e-35
Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR 273
            L  K A  C A + CR+SP QK QLV L+++NNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR
Sbjct:  806 LLLKVAEKCVAVIACRVSPAQKAQLVRLVRENNPEMRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGR 896
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14717.3379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJY5_9STRA2.480e-3767.05Phospholipid-translocating P-type atpase domain co... [more]
A0A6A4E1R7_9STRA8.560e-3670.33Phospholipid-transporting ATPase n=7 Tax=Phytophth... [more]
A0A3M6VIT6_9STRA1.170e-3570.33Phospholipid-transporting ATPase n=2 Tax=Peronospo... [more]
W2HMC0_PHYPR1.170e-3570.33Phospholipid-transporting ATPase n=14 Tax=Phytopht... [more]
H3GP37_PHYRM1.170e-3570.33Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
M4BJ26_HYAAE2.150e-3570.33Phospholipid-transporting ATPase n=1 Tax=Hyalopero... [more]
A0A2P4Y8V4_9STRA2.440e-3570.33Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
A0A225W7A7_9STRA2.960e-3570.33Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
A0A6H5KPG5_9PHAE2.980e-3570.00P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
D0NQA7_PHYIT4.050e-3569.23Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14717contigE-fasciculatus_F_contig14717:151..1267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue7e-30
Seed eggNOG ortholog67593.Physo129570
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.Phospholipid-translocating ATPase N-terminal
EggNOG OGs3QE12@4776,COG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927956.8621998-CDS-E-fasciculatus_F_contig14717:150..3251622927956.8621998-CDS-E-fasciculatus_F_contig14717:150..325Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14717 151..325 +
1695995766.4499054-CDS-E-fasciculatus_F_contig14717:150..3251695995766.4499054-CDS-E-fasciculatus_F_contig14717:150..325Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14717 151..325 +
1622927956.8753693-CDS-E-fasciculatus_F_contig14717:1166..12671622927956.8753693-CDS-E-fasciculatus_F_contig14717:1166..1267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14717 1167..1267 +
1695995766.4636831-CDS-E-fasciculatus_F_contig14717:1166..12671695995766.4636831-CDS-E-fasciculatus_F_contig14717:1166..1267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14717 1167..1267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14717.3379.1prot_E-fasciculatus_F_contig14717.3379.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14717 151..1267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14717.3379.1

>prot_E-fasciculatus_F_contig14717.3379.1 ID=prot_E-fasciculatus_F_contig14717.3379.1|Name=mRNA_E-fasciculatus_F_contig14717.3379.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
LFFKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPM
IQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGR*
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mRNA from alignment at E-fasciculatus_F_contig14717:151..1267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14717.3379.1 ID=mRNA_E-fasciculatus_F_contig14717.3379.1|Name=mRNA_E-fasciculatus_F_contig14717.3379.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1117bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14717:151..1267+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTTTTTCAAGTTCGCGAGCGTGTGTCAGGCGTTCGTCGGCTGCCGCAT
GTCTCCGGACCAGAAGCGACAGCTGGTGCACCTCATCAAGGACAACAACC
CGGACGCCCGGACGCTTGCTGTCGGCGATGGGGCCAACGACGTGCCCATG
ATCCAGGCAGCGCACGTCGGAGTCGGTAAGAGTTGAATCCTTGTCGTCTT
CGTGACGAACAGCAATCTTCCGTGTGTCTGCGGAGTCGGTAAGGGTTCAA
TCCTCTTCGCTTTCGTGACGAACAGCAATCTTTTGTGTCTCCACGGAGTC
GGCAAAAGTTCAATTCTTGTTCTCCAGTTGTTCCTAGTCTCGGCGCACCT
GGCCTCAAGGCTGTTTACGAAAAAGGATAATAGCATAGAGGTGTTTGACT
CGGATTCCGGCGTTTCTGCGCCATAGAGGTGTTGGGCTCGGATCCCGGCG
ATTCTGCGCCAGGAAAGAAAGCGCACGCGACCACGAAACCTACACTGACG
ATGATGGCCAATAGAGTTCGCGGCCAAGAGAGCCGCGGGATCTTCTTCTT
CTTCTCGAACTCTATTGGCCATCATCGTGGGCTTCGTGGTCGCCTGCGCC
TTCTCGCGGTGCTCGGAATCGTCGCAATCCGAGTCCTCCAACACCTCTGC
GATTCTCTTTTCTTGGTGTACAATTAAATTAGCCTTGGAACGGGCGGATG
CATCGAAAACACTGATGTCGGTGTATACCTGAAATGCCGAAACCTGCTGT
CTGCGGGGAAAACGGCAGTACATAGCACACAGCGGGTTTAACCTGATTTA
CATACATGGTACACAGCGGGTTCCTGATGTACATACAGCAGTATCATTGT
TGCATTATGATTTAGGAGTACGATAGAGTCCAAAGGGATATGAGGGTGAA
CTTTATTTGTTGTGTTTGTTTGGGGAGGGCATACGTGCGTGTGTTTTACG
GTGCCTTTTAGGCCACGTGTTTTTAATGTTGTACCATCACTTCGTCTTGT
GTGCTTGGTGGTGCAGGCATCAGCGGCCAGGAGGGGCTGCAAGCGGTGAA
CGCGAGCGATTACTCCCTCGCGCAGTTCCGGTTCCTGCAGAAGCTTCTCC
TCTGCCATGGAAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14717:151..1267+

>mRNA_E-fasciculatus_F_contig14717.3379.1 ID=mRNA_E-fasciculatus_F_contig14717.3379.1|Name=mRNA_E-fasciculatus_F_contig14717.3379.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14717:151..1267+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTTTTTCAAGTTCGCGAGCGTGTGTCAGGCGTTCGTCGGCTGCCGCAT
GTCTCCGGACCAGAAGCGACAGCTGGTGCACCTCATCAAGGACAACAACC
CGGACGCCCGGACGCTTGCTGTCGGCGATGGGGCCAACGACGTGCCCATG
ATCCAGGCAGCGCACGTCGGAGTCGCTGTTTTTCAAGTTCGCGAGCGTGT
GTCAGGCGTTCGTCGGCTGCCGCATGTCTCCGGACCAGAAGCGACAGCTG
GTGCACCTCATCAAGGACAACAACCCGGACGCCCGGACGCTTGCTGTCGG
CGATGGGGCCAACGACGTGCCCATGATCCAGGCAGCGCACGTCGGAGTCG
GCATCAGCGGCCAGGAGGGGCTGCAAGCGGTGAACGCGAGCGATTACTCC
CTCGCGCAGTTCCGGTTCCTGCAGAAGCTTCTCCTCTGCCATGGAAGGTG
AGCATCAGCGGCCAGGAGGGGCTGCAAGCGGTGAACGCGAGCGATTACTC
CCTCGCGCAGTTCCGGTTCCTGCAGAAGCTTCTCCTCTGCCATGGAAGGT
GA
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