mRNA_E-fasciculatus_F_contig14704.3375.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14704.3375.1
Unique NamemRNA_E-fasciculatus_F_contig14704.3375.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: D7FWD0_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD0_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 8.450e-121
Identity = 195/234 (83.33%), Postives = 207/234 (88.46%), Query Frame = 1 
Query:   16 QVVLPFKLLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLKQGIGSGWERHGSGSRVEPKPAPGDRSSQ 717
            +VVLPFKLLVTLVPICGGVALATANDTEVS EGA WALAGLLAAAGYQILVKSTQ+     +LQLLHHQAPQAAVLIL+VAPFFDDTG +VAMMIRT SA EPPLWLHST  +GSGT AG        +FWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGE+SSSARLSGM LALAGIVGYTTLKQG+GSGWE H SGSR EP+P  GD+SS+
Sbjct:  170 KVVLPFKLLVTLVPICGGVALATANDTEVSAEGASWALAGLLAAAGYQILVKSTQD-----NLQLLHHQAPQAAVLILMVAPFFDDTGELVAMMIRTFSAVEPPLWLHSTPANGSGTTAGXXXXXXXGVFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGEQSSSARLSGMALALAGIVGYTTLKQGLGSGWEGHSSGSRDEPRPPMGDKSSK 398
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: C5M0I8_PERM5 (TPT domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5M0I8_PERM5)

HSP 1 Score: 142 bits (358), Expect = 4.670e-37
Identity = 92/203 (45.32%), Postives = 121/203 (59.61%), Query Frame = 1 
Query:   25 LPFKLLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLK 633
            LP   L+ L+PIC GV LATA   +V++ G  + +AG+L+ + YQI VK+ QE+L+ SS QLL +QAP + +++L V P  DD                    +H+ L    GT AG            G+V  SC++AFLVNLS FLVIG+TSPVSY VLGH KLVVIL  G + FGE  +   L G++LA+ GIV YT LK
Sbjct:   21 LPLNQLLALLPICIGVGLATATSVQVNLLGITFGVAGILSTSLYQIWVKTKQEELKCSSQQLLLYQAPLSMIMLLSVVPAVDD--------------------VHTLLEFDWGTYAG------------GLVLASCIMAFLVNLSIFLVIGKTSPVSYNVLGHAKLVVILSSGYLAFGEPYTLPNLIGVSLAVLGIVSYTHLK 191
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A7J6PIF6_PEROL (UBX domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PIF6_PEROL)

HSP 1 Score: 141 bits (356), Expect = 1.830e-33
Identity = 96/203 (47.29%), Postives = 122/203 (60.10%), Query Frame = 1 
Query:   25 LPFKLLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLK 633
            LPF  L+ LVPIC GVALATA   EV++ G  + +AG+L+ + YQI VK+ QE+L+ SS QLL +QAP + +++L V P  DD        I TL   +   W               A  AG      G+V  SC +AFLVNLS FLVIG+TSPVSY VLGH KLVVIL  G + FGE  +   L G++LA+ GI+ YT LK
Sbjct:  128 LPFNQLLALVPICIGVALATATSVEVNLLGVTFGVAGILSTSLYQIWVKTKQEELKCSSQQLLLYQAPLSMIMLLSVVPAVDD--------IPTLINFD---W---------------ATYAG------GLVVASCAMAFLVNLSIFLVIGKTSPVSYNVLGHAKLVVILSSGYLAFGEPYTLPNLIGVSLAVFGIISYTHLK 298
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A7J6L489_PEROL (Mitotic spindle checkpoint protein Bub3 n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6L489_PEROL)

HSP 1 Score: 138 bits (348), Expect = 2.110e-32
Identity = 95/203 (46.80%), Postives = 121/203 (59.61%), Query Frame = 1 
Query:   25 LPFKLLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLK 633
            LPF  L+ LVPIC GVALATA   EV++ G  + +AG+L+ + YQI VK+ QE+L+ SS QLL +QAP + +++L V P  DD        I TL   +   W               A  AG      G+V  SC +AFLVNLS FLVIG+TSPVSY VLGH KLVVIL  G + F E  +   L G++LA+ GI+ YT LK
Sbjct:  496 LPFNQLLALVPICIGVALATATSVEVNLLGVTFGVAGILSTSLYQIWVKTKQEELKCSSQQLLLYQAPLSMIMLLSVVPAVDD--------IPTLIDFD---W---------------ATYAG------GLVVASCAMAFLVNLSIFLVIGKTSPVSYNVLGHAKLVVILSSGYLAFREPYTLPNLIGVSLAVFGIISYTHLK 666
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A7J6RJA4_PEROL (TPT domain-containing protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RJA4_PEROL)

HSP 1 Score: 127 bits (320), Expect = 8.170e-32
Identity = 83/192 (43.23%), Postives = 109/192 (56.77%), Query Frame = 1 
Query:   25 LPFKLLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLA 600
            LPF  L+ L PIC GVALATA   EV++ G  + +AG+L+ + YQI VK+ QE+L+ SS QLL +QAP + +++L V P  DD   ++     T +                                 G+V  SC +AFLVNLS FLVIG+TSPVSY VLGH KLVVIL  G + FGE  +   L G++LA
Sbjct:   25 LPFNQLLALAPICVGVALATATSVEVNLLGVTFGVAGILSTSLYQIWVKTKQEELKCSSQQLLLYQAPLSMIMLLSVVPAVDDIPTLIDFNWATYAG--------------------------------GLVVASCAMAFLVNLSIFLVIGKTSPVSYNVLGHAKLVVILSSGYLAFGEPYTLPNLIGVSLA 184
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A7J6M3L0_PERCH (TPT domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6M3L0_PERCH)

HSP 1 Score: 130 bits (327), Expect = 2.350e-31
Identity = 91/203 (44.83%), Postives = 117/203 (57.64%), Query Frame = 1 
Query:   25 LPFKLLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLK 633
            LP   L+ LVPIC GV LATA   EV+  G F+ +AG+L+ + YQI VK+ Q++L+ SS QLL +QAP +A+++++V P  DD        I TL   +   W          T AG    A + M            AFLVNLS FLVIG+TSP+SY VLGH KLVVIL  G + FGE  +   L G+ L + GIV YT LK
Sbjct:  130 LPLIQLLALVPICLGVILATATSVEVNPLGIFFGVAGILSTSLYQIWVKTKQDELKCSSQQLLLYQAPLSALMLMLVVPMADD--------ITTLMRFD---WY---------TYAGCLVIASSGM------------AFLVNLSIFLVIGKTSPISYNVLGHAKLVVILSSGYIAFGEPYTLPNLLGVGLTVFGIVSYTHLK 300
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A6A7FXN2_9CRUS (Solute carrier family 35 member E3 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FXN2_9CRUS)

HSP 1 Score: 127 bits (319), Expect = 4.630e-31
Identity = 84/209 (40.19%), Postives = 115/209 (55.02%), Query Frame = 1 
Query:   37 LLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLKQGIGSGWERH 663
            L + L PIC GV LA  ND +V+  G  +A+ G+L+ + YQI VKS Q+ L V++ QLL +QAP A++++LV  P  D                     +H+     SG   G    A      V  +FLS +LAF VNLS FLVIG++SP+SY VLGH KL VIL  G   FG+  +  +L G+ +A  GI+ Y+  K  I  GWE +
Sbjct:   33 LKLALTPICLGVILALFNDIQVNKMGTIYAICGVLSTSMYQIWVKSKQKDLDVNAFQLLLYQAPLASLMVLVFIPILDQ--------------------MHT-----SGNVIGLRDIAWTFQL-VKWIFLSAILAFCVNLSIFLVIGKSSPISYNVLGHLKLCVILTGGYFLFGDNMNFTKLLGIAIAFVGILMYSYFKFTIKDGWESY 215
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A0G4EQF8_VITBC (TPT domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EQF8_VITBC)

HSP 1 Score: 124 bits (311), Expect = 1.420e-28
Identity = 82/204 (40.20%), Postives = 113/204 (55.39%), Query Frame = 1 
Query:   22 VLPFKLLVTLVPICGGVALATANDTEVSVEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLK 633
            VLPF  +++LVP+C GVALAT    EV+  G  +  AG+++ + YQI VK  QE LQ +S QLL++Q+  + V++  + PF +         + T     P L L    P                 FW+     S  LAFLVNLS FLVIG+TSP+SY VLGH KL  ILL G + FG+ ++   ++G+ + L GI  YT LK
Sbjct:  120 VLPFWQIISLVPVCVGVALATVTSIEVNFWGLVFGGAGIISTSLYQIWVKKEQESLQCTSPQLLYYQSAVSGVMLCCLVPFMEP--------LVTDKDGNPGLLLFDFTPW--------------VTFWI---LTSAALAFLVNLSIFLVIGKTSPISYNVLGHGKLTCILLTGYLVFGQEATWKNITGVIMTLIGIFWYTHLK 298
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A8J2AI62_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2AI62_9DINO)

HSP 1 Score: 123 bits (308), Expect = 5.500e-28
Identity = 83/204 (40.69%), Postives = 117/204 (57.35%), Query Frame = 1 
Query:   25 LPFKLLVTLVPICGGVALATANDTEVS-VEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLK 633
            L F   V+L+PIC GV+LAT +  EV+ + G F+ + G+ + + YQI VKS Q  LQ++  QLLHHQ+  +  ++  +A F+ D   +  +    +S    P+     +   S            + F++  V  SC LA+LVNLSTFLVIG+TSPVSYQVLGH KL VI+L   + FG+  S   + G  +AL GI  YT LK
Sbjct:  217 LTFWQTVSLIPICVGVSLATVSSLEVNGLTGVFFGVMGIFSTSLYQIWVKSKQSDLQLNPFQLLHHQSFLSMWMLAPLA-FYVDRSLLFCLQDYAMSTLGDPVCADKVIRPLS------------DPFFLAGVGTSCCLAYLVNLSTFLVIGKTSPVSYQVLGHSKLFVIMLSAFLMFGDIPSPQNIGGCVMALLGIFWYTYLK 407
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BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Match: A0A8J2AGJ0_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2AGJ0_9DINO)

HSP 1 Score: 122 bits (305), Expect = 2.030e-27
Identity = 85/204 (41.67%), Postives = 116/204 (56.86%), Query Frame = 1 
Query:   25 LPFKLLVTLVPICGGVALATANDTEVS-VEGAFWALAGLLAAAGYQILVKSTQEKLQVSSLQLLHHQAPQAAVLILVVAPFFDDTGGIVAMMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLAFLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGMTLALAGIVGYTTLK 633
            L F   V+L+PIC GVA+AT +  EV+   G F+   G+ + + YQI VKS Q  LQ++  QLLHHQ+   ++L+L    F+ D   +  +    L+    P+     +   S            + ++V  V  SC LA+LVNLSTFLVIG+TSPVSYQVLGH KL V++L   + FG+  S   L G  +ALAGI  YT LK
Sbjct:  242 LTFWQSVSLIPICCGVAMATISSLEVNGFLGLFFGAMGIFSTSLYQIWVKSKQADLQLNPFQLLHHQS-FLSMLMLAPLAFYVDRSFLFCLQDFALAVQPDPVCHVKVIQPLS------------DPWFVSAVGCSCFLAYLVNLSTFLVIGKTSPVSYQVLGHSKLFVVMLSAFLMFGDLPSLQNLLGCGMALAGIFWYTWLK 432
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14704.3375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD0_ECTSI8.450e-12183.33TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
C5M0I8_PERM54.670e-3745.32TPT domain-containing protein n=1 Tax=Perkinsus ma... [more]
A0A7J6PIF6_PEROL1.830e-3347.29UBX domain-containing protein n=1 Tax=Perkinsus ol... [more]
A0A7J6L489_PEROL2.110e-3246.80Mitotic spindle checkpoint protein Bub3 n=4 Tax=Pe... [more]
A0A7J6RJA4_PEROL8.170e-3243.23TPT domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7J6M3L0_PERCH2.350e-3144.83TPT domain-containing protein n=1 Tax=Perkinsus ch... [more]
A0A6A7FXN2_9CRUS4.630e-3140.19Solute carrier family 35 member E3 (Fragment) n=1 ... [more]
A0A0G4EQF8_VITBC1.420e-2840.20TPT domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A8J2AI62_9DINO5.500e-2840.69Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A8J2AGJ0_9DINO2.030e-2741.67Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14704contigE-fasciculatus_F_contig14704:535..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue2.7e-56
Seed eggNOG ortholog2880.D7FWD0
KEGG koko:K11665,ko:K14301,ko:K15285
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000003,GO:0000139,GO:0000278,GO:0000281,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005338,GO:0005457,GO:0005459,GO:0005460,GO:0005464,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009605,GO:0009607,GO:0009624,GO:0009791,GO:0009832,GO:0009833,GO:0009987,GO:0010154,GO:0010191,GO:0010192,GO:0010214,GO:0012505,GO:0015075,GO:0015165,GO:0015291,GO:0015297,GO:0015711,GO:0015780,GO:0015783,GO:0015786,GO:0015790,GO:0015931,GO:0015932,GO:0016020,GO:0022402,GO:0022414,GO:0022804,GO:0022857,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034220,GO:0036080,GO:0042546,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044249,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048354,GO:0048359,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051704,GO:0051707,GO:0055085,GO:0061458,GO:0061640,GO:0071554,GO:0071669,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072334,GO:0090480,GO:0090481,GO:0097708,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903047
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
EC3.6.4.12
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-25_000550.1
Exons3
Model size1107
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14704.3375.1prot_E-fasciculatus_F_contig14704.3375.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14704 1462..2540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927955.5242305-UTR-E-fasciculatus_F_contig14704:534..7261622927955.5242305-UTR-E-fasciculatus_F_contig14704:534..726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14704 535..726 +
1695995765.8004267-UTR-E-fasciculatus_F_contig14704:534..7261695995765.8004267-UTR-E-fasciculatus_F_contig14704:534..726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14704 535..726 +
1622927955.546551-UTR-E-fasciculatus_F_contig14704:1362..14611622927955.546551-UTR-E-fasciculatus_F_contig14704:1362..1461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14704 1363..1461 +
1695995765.812262-UTR-E-fasciculatus_F_contig14704:1362..14611695995765.812262-UTR-E-fasciculatus_F_contig14704:1362..1461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14704 1363..1461 +
1622927955.5958376-UTR-E-fasciculatus_F_contig14704:2540..28641622927955.5958376-UTR-E-fasciculatus_F_contig14704:2540..2864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14704 2541..2864 +
1695995765.8423274-UTR-E-fasciculatus_F_contig14704:2540..28641695995765.8423274-UTR-E-fasciculatus_F_contig14704:2540..2864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14704 2541..2864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927955.5659509-CDS-E-fasciculatus_F_contig14704:1461..16711622927955.5659509-CDS-E-fasciculatus_F_contig14704:1461..1671Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14704 1462..1671 +
1695995765.822548-CDS-E-fasciculatus_F_contig14704:1461..16711695995765.822548-CDS-E-fasciculatus_F_contig14704:1461..1671Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14704 1462..1671 +
1622927955.5807378-CDS-E-fasciculatus_F_contig14704:2258..25401622927955.5807378-CDS-E-fasciculatus_F_contig14704:2258..2540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14704 2259..2540 +
1695995765.8317046-CDS-E-fasciculatus_F_contig14704:2258..25401695995765.8317046-CDS-E-fasciculatus_F_contig14704:2258..2540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14704 2259..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14704.3375.1

>prot_E-fasciculatus_F_contig14704.3375.1 ID=prot_E-fasciculatus_F_contig14704.3375.1|Name=mRNA_E-fasciculatus_F_contig14704.3375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MMIRTLSAAEPPLWLHSTLPSGSGTPAGSAQTAGAEMFWVGMVFLSCLLA
FLVNLSTFLVIGRTSPVSYQVLGHFKLVVILLVGVVGFGERSSSARLSGM
TLALAGIVGYTTLKQGIGSGWERHGSGSRVEPKPAPGDRSSQEIGGGRAG
PAYTMTSREKGRL*
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mRNA from alignment at E-fasciculatus_F_contig14704:535..2864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14704.3375.1 ID=mRNA_E-fasciculatus_F_contig14704.3375.1|Name=mRNA_E-fasciculatus_F_contig14704.3375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14704:535..2864+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCTTGCACGCCGAGCAGGTGGTTTTGCCCTTCAAGCTGCTGGTCACTCT
CGTGCCCATCTGCGGGGGGGTGGCTCTGGCGACAGCCAACGACACGGAGG
TATCCGTGGAGGGGGCGTTTTGGGCATTGGCGGGACTGTTGGCTGCGGCT
GGGTACCAGATCTTGGTCAAGAGCACTCAGGAAAAATTGCAGGTGCCCGT
CTTGTCACACCTCCCCCCCCTGCGACCGCCGCATGAAAGTTATGAGGTGT
GGTGGGCAGGACGCACTAAATGTGGTGCAACCACGATTCTGGAGAAGTTA
GGCAGACGTGTGTGACCCTCCGTGGCCACGGCATTTTACGTTCTGCCATC
CCCGCCGTTTAAAAAACTCGTAGAGCGGCCGGTCAACTGCACGCCTACGT
ACGACACAGTGGCGTTTTGTAGCGACACAGCTGTTTCCGAACCCGTATGC
TTTACGTGGACACCACGTGTACGGCACATCAAAGGCGAGAATATGGTACA
TAACGTGGTCTTTCGTCAAACGCGATAGTTCAGTTCATCATTCGAAGACG
CATTTTTTTCTATCAACCGCCACTCCTGACCAACTTTAGTTTCCTGACCA
TGCCGCAATATGAGCTCATTTGACGCAACCGCAAGGTTAGAAGGGATGTT
TGGAGTATATGCGATATCAACAACGTCTAGAACAGCGTCATAATTGAAAC
GTTGTAAGGTGCACACCACGCGGGGTATGTGTAGGATGGCATCGGGGGCC
TTTCCTCCCTTTTTCGTTTTCTGGGTTTGTCCGACATGAATCAAGCCAGG
GATCTTTCGCTGCACCCGGATATTTCAGGTGTCCTCTCTACAACTTCTTC
ACCACCAAGCGCCACAAGCTGCGGTTTTGATCCTCGTCGTGGCACCGTTT
TTCGATGACACGGGCGGGATCGTTGCGATGATGATTCGAACCCTCTCAGC
AGCAGAACCCCCGCTTTGGCTTCATTCTACCCTTCCGAGCGGGAGCGGGA
CACCGGCAGGGTCGGCACAGACGGCGGGAGCAGAGATGTTTTGGGTGGGG
ATGGTGTTCCTGTCTTGTCTGTTGGCTTTCCTGGTGAACCTGAGCACCTT
CCTCGTCATCGGAAGGACTTCCCCAGTCTCGTACCAGGTGATGGGGGCGA
AGGAGACAAATTCTTTTCCTGGCAGTCCCTTCACGCAGAAATACAAGAAC
ATGACCCCCCTTTGCCCCGAAGAAACTGTCCACTTTTTCTTTCCGGACCT
GCCAATAGTTTATGTTGTTGCTTCGGCGGTACATGATATCGCGTATCCCC
CCCCCCTGGTGATGTGTTAGCCTGGTCCAGTGAAAACCCGGCGTGCTCCG
TCCCGGCTTTGTAGGGATGGAGGTCAACGGTGAAACGACTACGGCAAGCA
CGGCTATGAGTACACCCCCCCCCCCACTTCGACCTTGCGTGGATCGCGTA
GCCCAAAGCTGAGCGATTCTCCTTGTGAGAGGTTTCAGGTTTATCAGTGC
CATAATCCACCACCCCAATACTCGGATCTGGACCACAAATGACGCGATCG
GCCAAGTCGCATCATGCATCGGATCCGTCTCTGTATCAGAATGGTGCGTG
AGACATGTTCTACATGCAGCTGTCGCGCTTGAGAGCAGTTGGGTGTATCT
CACAAGGTGGACTCGGAGTGCGTGGGCTCTGGTGAGGCTGCTTCTCACCC
GCTCACGCCAACCGACCACCGCAGGTTCTCGGCCACTTCAAGCTCGTGGT
TATTCTGCTGGTGGGAGTGGTAGGGTTCGGGGAGCGGTCCAGCTCCGCAC
GGCTCTCCGGCATGACTCTCGCCCTCGCGGGCATCGTAGGTTACACCACG
CTCAAGCAGGGCATCGGCAGCGGCTGGGAAAGACACGGCAGTGGTAGCAG
GGTTGAACCCAAGCCGGCGCCGGGGGATAGATCGAGCCAAGAGATTGGTG
GCGGTCGAGCTGGGCCCGCGTACACGATGACGTCGCGCGAAAAGGGAAGG
CTGTAGGATGGTGTTGGTTCCGTTGTAAACTGTTCGTCGGGGAAAATGTC
AGGGGCCTGGCGTGGGAAAGTTTCCCTGCCTGTCAACCTTTCGTTTTCCG
GTACAAGCGTGTTGATGTACACGTATGCATACACGTACCTCTACCTTGTT
CGAGCCTGTTTATCCGGGTAACAAACGAGGGAGCGTAGCGAGCACACGAG
GCCGGAAGACGATCTATCTGCTGGGTGATCGGTGTGTGTATTGCGGTTAG
TTTAAGCTCGCTTTCGAAACAGTCCCATCTCTTGTGAGCGGCGTACGAAA
GACGTATTGGACAACACTAGTGCAAGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14704:535..2864+

>mRNA_E-fasciculatus_F_contig14704.3375.1 ID=mRNA_E-fasciculatus_F_contig14704.3375.1|Name=mRNA_E-fasciculatus_F_contig14704.3375.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14704:535..2864+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGATTCGAACCCTCTCAGCAGCAGAACCCCCGCTTTGGCTTCATTC
TACCCTTCCGAGCGGGAGCGGGACACCGGCAGGGTCGGCACAGACGGCGG
GAGCAGAGATGTTTTGGGTGGGGATGGTGTTCCTGTCTTGTCTGTTGGCT
TTCCTGGTGAACCTGAGCACCTTCCTCGTCATCGGAAGGACTTCCCCAGT
CTCGTACCAGATGATGATTCGAACCCTCTCAGCAGCAGAACCCCCGCTTT
GGCTTCATTCTACCCTTCCGAGCGGGAGCGGGACACCGGCAGGGTCGGCA
CAGACGGCGGGAGCAGAGATGTTTTGGGTGGGGATGGTGTTCCTGTCTTG
TCTGTTGGCTTTCCTGGTGAACCTGAGCACCTTCCTCGTCATCGGAAGGA
CTTCCCCAGTCTCGTACCAGGTTCTCGGCCACTTCAAGCTCGTGGTTATT
CTGCTGGTGGGAGTGGTAGGGTTCGGGGAGCGGTCCAGCTCCGCACGGCT
CTCCGGCATGACTCTCGCCCTCGCGGGCATCGTAGGTTACACCACGCTCA
AGCAGGGCATCGGCAGCGGCTGGGAAAGACACGGCAGTGGTAGCAGGGTT
GAACCCAAGCCGGCGCCGGGGGATAGATCGAGCCAAGAGATTGGTGGCGG
TCGAGCTGGGCCCGCGTACACGATGACGTCGCGCGAAAAGGGAAGGCTGT
AGGTTCTCGGCCACTTCAAGCTCGTGGTTATTCTGCTGGTGGGAGTGGTA
GGGTTCGGGGAGCGGTCCAGCTCCGCACGGCTCTCCGGCATGACTCTCGC
CCTCGCGGGCATCGTAGGTTACACCACGCTCAAGCAGGGCATCGGCAGCG
GCTGGGAAAGACACGGCAGTGGTAGCAGGGTTGAACCCAAGCCGGCGCCG
GGGGATAGATCGAGCCAAGAGATTGGTGGCGGTCGAGCTGGGCCCGCGTA
CACGATGACGTCGCGCGAAAAGGGAAGGCTGTAG
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