mRNA_E-fasciculatus_F_contig14687.3362.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14687.3362.1
Unique NamemRNA_E-fasciculatus_F_contig14687.3362.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.070e-52
Identity = 93/130 (71.54%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:    1 MNNGTPXXXXXXXXXXXKRHPALAPLLPKSLITKKIPAPLPEDVARAKKAALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIWS-QAGDPALCPTCRVPFNKIKKTLTPKDMAKEKLRNERDK 387
            MNNGTP           KRHPALAP+LPKSLITKKIPAP PEDV R KKAA +DAKK E+C +C  ALPDI RG++ACGHTFCFGCIH WS ++GD  LCP+CRVPFNKIKKTL+PKD+ KEKLRNE DK
Sbjct:    1 MNNGTPPGDAPTNN---KRHPALAPVLPKSLITKKIPAPHPEDVERTKKAAADDAKKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLRNEVDK 127
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BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.630e-51
Identity = 93/129 (72.09%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:    1 MNNGTPXXXXXXXXXXXKRHPALAPLLPKSLITKKIPAPLPEDVARAKKAALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIW-SQAGDPALCPTCRVPFNKIKKTLTPKDMAKEKLRNERD 384
            MNNGTP           KRHPALAP LPKSLITKKIPAP PEDV R +KAA +DAKK E+C +CL ALPDI RG++ACGHTFCFGCIH W S  GD ALCP+CR PFNKIKKTL+PKD+ KEKLRNERD
Sbjct:    1 MNNGTPPGDAPNNN---KRHPALAPFLPKSLITKKIPAPHPEDVERTRKAAADDAKKGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNERD 126
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BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.860e-16
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:   52 KRHPALAPLLPKSLITKKIPAPLPED-VARAKKAALED-AKKEE------------------VCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQAGDPALCPTCRVPFNKIKKTLTPKDMAKEK 366
            K  P LAP   +S +T+   APLPE+ +AR +  + E+ A++ E                  +C +C + LPD+ RGVL+CGH FCF CIH W++  + ++CP CRV   +I KTL+P D AK K
Sbjct:   19 KNQPTLAPTPDQSEVTRT--APLPEELIARTEGVSKEEEARRVERAXXXXXXXXXXXXXXXXMCAICCDKLPDLERGVLSCGHVFCFACIHQWTK--NSSICPGCRVQIKRITKTLSPADEAKSK 139
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BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.500e-14
Identity = 47/126 (37.30%), Postives = 67/126 (53.17%), Query Frame = 1 
Query:   52 KRHPALAPLLPKSLITKKIPAPLPED-VARAKKAALEDAKKEE--------------------VCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQAGDPALCPTCRVPFNKIKKTLTPKDMAKEK 366
            K  P LAP   +S +T+   APLPE+ +AR +  + E                          +C +C + LP++ RGVL+CGH FCF CIH W++  + ++CP CRV   +I KTL+P D AK K
Sbjct:  114 KNQPTLAPTPDQSEVTRT--APLPEELIARTEGVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXMCAICCDKLPNLERGVLSCGHVFCFACIHQWTK--NSSICPGCRVQIKRITKTLSPADEAKAK 235
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BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A5A7PSE2_STRAF (Zinc finger family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PSE2_STRAF)

HSP 1 Score: 52.0 bits (123), Expect = 7.100e-5
Identity = 30/73 (41.10%), Postives = 36/73 (49.32%), Query Frame = 1 
Query:  127 DVARAKKAALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIW----SQAGDPALCPTCRVPFNKIKK 333
            DV   K+ A   A  E  C +C        RGVL+CGH FCF CI  W    S +G P+ CP C+  F  I K
Sbjct:  296 DVDAGKRMA---APSELSCVICWTEF-SATRGVLSCGHRFCFHCIQNWADHMSLSGKPSTCPLCKASFTCIMK 364
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BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A388L0H1_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L0H1_CHABU)

HSP 1 Score: 52.0 bits (123), Expect = 8.480e-5
Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:  181 CTVCLNALPDIG-RGVLACGHTFCFGCIHIWSQAGDPALCPTCRVPFNKI-KKTLTPKDMA 357
            C +CL    D   +G+L CGH FCF CI  W++      CP CR  FN I K+ L P+D A
Sbjct: 1433 CMICLLTTKDAEEKGLLPCGHVFCFKCICCWARTLVNPFCPICRSLFNIITKRRLRPEDEA 1493
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BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: UPI0009E26718 (uncharacterized protein LOC110019553 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E26718)

HSP 1 Score: 51.6 bits (122), Expect = 9.610e-5
Identity = 23/62 (37.10%), Postives = 31/62 (50.00%), Query Frame = 1 
Query:  160 DAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQA----GDPALCPTCRVPFNKIKK 333
            D + E  C +C      + RGVL CGH FC+ CI +W+      G  + CP C+  F  I K
Sbjct:  297 DQQTEPSCVICWTEFCSL-RGVLPCGHRFCYSCIQVWADCMASKGKVSACPLCKANFTSITK 357
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L829_9PHAE3.070e-5271.54RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGW0_ECTSI1.630e-5172.09RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2A7_9PHAE3.860e-1640.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGV7_ECTSI7.500e-1437.30Similar to PHD finger family protein, partial n=1 ... [more]
A0A5A7PSE2_STRAF7.100e-541.10Zinc finger family protein n=1 Tax=Striga asiatica... [more]
A0A388L0H1_CHABU8.480e-544.26Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI0009E267189.610e-537.10uncharacterized protein LOC110019553 n=1 Tax=Phala... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14687contigE-fasciculatus_F_contig14687:75..2515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size459
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14687.3362.1prot_E-fasciculatus_F_contig14687.3362.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14687 75..2515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927952.7832108-CDS-E-fasciculatus_F_contig14687:74..2011622927952.7832108-CDS-E-fasciculatus_F_contig14687:74..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 75..201 +
1695995764.498595-CDS-E-fasciculatus_F_contig14687:74..2011695995764.498595-CDS-E-fasciculatus_F_contig14687:74..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 75..201 +
1622927952.798065-CDS-E-fasciculatus_F_contig14687:768..8751622927952.798065-CDS-E-fasciculatus_F_contig14687:768..875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 769..875 +
1695995764.5090892-CDS-E-fasciculatus_F_contig14687:768..8751695995764.5090892-CDS-E-fasciculatus_F_contig14687:768..875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 769..875 +
1622927952.8085835-CDS-E-fasciculatus_F_contig14687:1892..20361622927952.8085835-CDS-E-fasciculatus_F_contig14687:1892..2036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 1893..2036 +
1695995764.5196378-CDS-E-fasciculatus_F_contig14687:1892..20361695995764.5196378-CDS-E-fasciculatus_F_contig14687:1892..2036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 1893..2036 +
1622927952.8192675-CDS-E-fasciculatus_F_contig14687:2434..25151622927952.8192675-CDS-E-fasciculatus_F_contig14687:2434..2515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 2435..2515 +
1695995764.5334125-CDS-E-fasciculatus_F_contig14687:2434..25151695995764.5334125-CDS-E-fasciculatus_F_contig14687:2434..2515Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14687 2435..2515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14687.3362.1

>prot_E-fasciculatus_F_contig14687.3362.1 ID=prot_E-fasciculatus_F_contig14687.3362.1|Name=mRNA_E-fasciculatus_F_contig14687.3362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=153bp
MNNGTPPGGAPNNNNNNKRHPALAPLLPKSLITKKIPAPLPEDVARAKKA
ALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQAGDPALCP
TCRVPFNKIKKTLTPKDMAKEKLRNERDKKRKNATKKQRDRMRRRRASVK
QPV
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mRNA from alignment at E-fasciculatus_F_contig14687:75..2515+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14687.3362.1 ID=mRNA_E-fasciculatus_F_contig14687.3362.1|Name=mRNA_E-fasciculatus_F_contig14687.3362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2441bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14687:75..2515+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACAACGGTACACCTCCGGGGGGTGCCCCCAACAACAACAACAACAA
CAAGCGCCACCCCGCCCTGGCGCCCTTGTTGCCGAAGTCGCTCATCACCA
AGAAGATTCCCGCGCCTCTGCCCGAAGGTATGTACGTGGCGTTCGACGCT
TTTATGTAGACGCTGCTGTTTTTGGCTCACCAGCAGTACTGTAGCACGTT
GTTTGATGTGTACACCCACCTGCTTCGGTGGTATCCCGTTTGTTGTGCCT
CCACGGTACGGTATCCCGCGTGTGTGCCTCCGCGTCCCACCCGTATTTGG
GCCGATCGGGAGGTCGTCGAATGTACGCACACCAAGAATCATGCAAAAAA
AATAGGAAATGCTAATAAATAGTAGATTTAGCGGCAACGCACTGCTGCTG
TGTCTGTTCCGTGCTGGATTTCGTGCTCGTTGTTCCCGGGTTCAAAAGCA
GGGATGGGTTGGTGTTAACACATGTGGTGACAAACTTGTCTGCGAATTTC
ATCGTCTTGTGCTCGTGTCCGGGGATGCACACAGGACAGATGCGTTTTTT
GCCGTTGTTGTTCCCCCGAGAATGTTTGAAGAGGAGGTGGTTATGGTGAT
CCACCCCCTTGCGTGCTGTCGGTCTTCCACACCCACCCCACCACGCCTTG
TAAATGTCACAACCTCGGTGATTGGCATCTCTCTGCCGCCACAGACGTTG
CGAGGGCTAAGAAGGCCGCGTTGGAGGACGCGAAAAAGGAAGAGGTCTGC
ACCGTCTGCCTAAACGCCCTCCCTGACATCGGAAGAGGCGTCCTCGCTTG
CGTGAGTCGAGTCATCCTTCTCTCGAATCCCTTGCGTTCCTCTGCATCTG
TGATTTTCTTTTTCTTTGCTCGGTGTTTTTTTTTTTTTTTTTCGTGTGCG
CTTTCGGGTGTCAGCTCTCGCTTGGTGTCGCTGGTAGCTGTTGTGCGTTC
GAGGAATGCCAGAGAGAACCAAAAGTGCTTGATTTCCGGAACTATAAATG
TGTTAGATGGGGAGTGTTTATGTAATTTATTAATTGTTTTTTGTTTGGGG
AATGTTTTGGGGTTGGGGAGGGATAGTTTTGGTTTTAGGGAGGTAATATC
GCCCTTTCCAGTAATATGGTGGCCTCTGTCTAAGCCGCCTCATACCGCCA
AGGCATTCGGCCTCCTTTTGTCCGGGCACCCGACACCCTTTCAAGAGTAT
GAGCCCCTCATACTATTTCGATCTGTGTCGCCCGATTTCACCGACCTTCT
ACAGGGCGACCGGCATTATGCGCTTGGAACTGACCATGGAGTAGACATGC
TTACCTTTACCGTTCATTTCCACCCTGTGTTCCGTATGTGCTACTTGTTT
ATGTTCCTAGAAGCTCAGCTGAGAAAACGAGCATGTTGAGCGGCAGGCTA
CGACTGAACGAATCAATAGAGCAGCGTGAGAAACGAAGCATGTCTGGTAG
AAAAAAACGGCAAGAGAACGGAGCCAGGCGAACAAAACAAAAATCGGGAT
CAGGTCGTGAGCGTAGAGAGAAAGAGTGTGAAGCCTCGTCTCCACAGACC
ATCCCGCGCTCTCTTAGTTATCACTTATCGTTACTGCTGACTATCAAATT
TCTCTCCTTCTCTTTTTTGTTTTTTTTCGTTACGAAGGCCAAGATGTTCC
TTCTCCTCTCATACACCACCACCACCCGTCATCACCGACACTATATCGCC
TGAGAAGTTGTAACTTGCTGCGCATCACCGCCTTGAATTTAACCGTGCTT
CTCCGCCGATGCCTCTTTTTGTTTTGGGGGGATGATTTTTTCGCGCGCAC
TCCTGCTGCTTTATCCAGGGACACACCTTTTGCTTCGGCTGCATCCACAT
TTGGTCCCAGGCTGGCGACCCCGCGCTCTGCCCAACATGCCGCGTCCCCT
TCAACAAGATCAAGAAGACTCTGACGCCGAAGGACATGGCGAAGGAGAAG
CTTCGCAACGAGGTGTGCGCGAATTGCAAGAGGAGAAGGCTCAACCCCAC
GACCCTCGTTAGCTAGTCCTGGGGTCGGCTGTATCCGTTCCTGCCCTGGC
TTAGTCGCCCTGCGGCGGATTGTCATCTGTCTGACGCATCGCTCTGCTGT
GGGGTACTCTCCGCCTGACGTGCTTCATTTGGCCGGCTGTATCAGTTCCT
GTCCTAGCTTAGTCGCCCTGCGTCGGATTAATCTGTCTGACGCATCGCTC
TGCTGTGGGTTACTCTCTGTCTGATCGTGCTTATCGGCTGCAACTGGTAC
ATCTAGATTCCGCATATCAATTCCTGCGATTCATATCTAGAACTCTCTTC
CGCTACGATTACACCTCTGTGCGTGTGCGTGTGCTTGTGCGTTCTTTTGT
TTTTTTGCAGCGCGACAAGAAGAGGAAGAACGCCACCAAGAAGCAGCGCG
ACAGGATGAGGCGTCGCCGCGCGAGCGTGAAGCAACCAGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14687:75..2515+

>mRNA_E-fasciculatus_F_contig14687.3362.1 ID=mRNA_E-fasciculatus_F_contig14687.3362.1|Name=mRNA_E-fasciculatus_F_contig14687.3362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=918bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14687:75..2515+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACAACGGTACACCTCCGGGGGGTGCCCCCAACAACAACAACAACAA
CAAGCGCCACCCCGCCCTGGCGCCCTTGTTGCCGAAGTCGCTCATCACCA
AGAAGATTCCCGCGCCTCTGCCCGAAGATGAACAACGGTACACCTCCGGG
GGGTGCCCCCAACAACAACAACAACAACAAGCGCCACCCCGCCCTGGCGC
CCTTGTTGCCGAAGTCGCTCATCACCAAGAAGATTCCCGCGCCTCTGCCC
GAAGACGTTGCGAGGGCTAAGAAGGCCGCGTTGGAGGACGCGAAAAAGGA
AGAGGTCTGCACCGTCTGCCTAAACGCCCTCCCTGACATCGGAAGAGGCG
TCCTCGCTTGCACGTTGCGAGGGCTAAGAAGGCCGCGTTGGAGGACGCGA
AAAAGGAAGAGGTCTGCACCGTCTGCCTAAACGCCCTCCCTGACATCGGA
AGAGGCGTCCTCGCTTGCGGACACACCTTTTGCTTCGGCTGCATCCACAT
TTGGTCCCAGGCTGGCGACCCCGCGCTCTGCCCAACATGCCGCGTCCCCT
TCAACAAGATCAAGAAGACTCTGACGCCGAAGGACATGGCGAAGGAGAAG
CTTCGCAACGAGGGACACACCTTTTGCTTCGGCTGCATCCACATTTGGTC
CCAGGCTGGCGACCCCGCGCTCTGCCCAACATGCCGCGTCCCCTTCAACA
AGATCAAGAAGACTCTGACGCCGAAGGACATGGCGAAGGAGAAGCTTCGC
AACGAGCGCGACAAGAAGAGGAAGAACGCCACCAAGAAGCAGCGCGACAG
GATGAGGCGTCGCCGCGCGAGCGTGAAGCAACCAGTGCGCGACAAGAAGA
GGAAGAACGCCACCAAGAAGCAGCGCGACAGGATGAGGCGTCGCCGCGCG
AGCGTGAAGCAACCAGTG
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