mRNA_E-fasciculatus_F_contig14684.3359.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14684.3359.1
Unique NamemRNA_E-fasciculatus_F_contig14684.3359.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14684.3359.1 vs. uniprot
Match: A0A6H5JD35_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD35_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 3.920e-67
Identity = 119/141 (84.40%), Postives = 132/141 (93.62%), Query Frame = 3 
Query:  726 IMSDEEPYDGNHNSNGSLPDDDMDQQEEEGSDYDSEYAYE---SDGEVGSSTKGMDLAKADADALTVDLDGMFAKVEAHTSTLIRLWVCVEHGRLFEGLAPRAVEALGLDPSKDVMVMFTTDEDYTGCKKPKVQWARQVDP 1139
            ++SD+EPY+G+ NSNGS+PDDDM+QQEEE SDYDSEYA+E   SDGEVGSSTKGMDLAKADADAL VD++GMFAKVEAHT TLIRLWVCVEH RLFEGLA RAVEALGLDPSKDVMVMFTTD+DYTGC++PKVQWARQVDP
Sbjct:    1 MISDDEPYNGDGNSNGSMPDDDMEQQEEEASDYDSEYAWEEGQSDGEVGSSTKGMDLAKADADALNVDVEGMFAKVEAHTPTLIRLWVCVEHSRLFEGLATRAVEALGLDPSKDVMVMFTTDQDYTGCRRPKVQWARQVDP 141
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BLAST of mRNA_E-fasciculatus_F_contig14684.3359.1 vs. uniprot
Match: D7G899_ECTSI (UBA/TS-N domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G899_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 2.090e-59
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 3 
Query:  729 MSDEEPYDGNHNSNGSLPDDDMDQQEEEGSDYDSEYAYE---SDGEVGSSTKGMDLAKADADALTVDLDGMFAKVEAHTSTLIRLWVCVEHGRLFEGLAPRAVEALGLDPSKDVMVMFTTDEDYTGCKKPKVQWARQVDP 1139
            MSD+EPY      N  +PDDDMDQQEEE SDYDSEYA+E   SDGEV SSTKGMDLAKADADAL VD++GMFAKVEAHTSTLIRLWVCVEH RLFEGLA  AVEALGLDP+KDVMVMFTTD+DY GC +PKVQWARQVDP
Sbjct:    1 MSDDEPY------NDDMPDDDMDQQEEEASDYDSEYAWEEGQSDGEVESSTKGMDLAKADADALNVDVEGMFAKVEAHTSTLIRLWVCVEHSRLFEGLATSAVEALGLDPAKDVMVMFTTDQDYPGCVRPKVQWARQVDP 134
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BLAST of mRNA_E-fasciculatus_F_contig14684.3359.1 vs. uniprot
Match: A0A6H5J7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.920e-12
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:  888 AKADADALTVDLDGMFAKVEAHTSTLIRLWVCVEHGRLFEGLAPRA-VEALGLDPSKDVMVMFTTDEDYTGCKK-PKVQWARQV 1133
            A+ADAD     +DG+ A+V+  +S L  LWV ++  RL EG AP   VE +GLDP K V+VM TTD DYT   K PKV WARQV
Sbjct:   91 AQADADEFIDGVDGITARVQL-SSALTNLWVYIDPRRLSEGRAPGTRVETVGLDPRKGVVVMLTTDHDYTSSSKCPKVLWARQV 173
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BLAST of mRNA_E-fasciculatus_F_contig14684.3359.1 vs. uniprot
Match: D7G896_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G896_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 5.890e-10
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:  888 AKADADALTVDLDGMFAKVEAHTSTLIRLWVCVEHGRLFEGLA-PRAVEALGLDPSKDVMVMFTTDEDYTGCKK-PKVQWARQV 1133
            A ADAD     +DG+ A+V+  +S L  LWV ++  RL EG A   +VE +GLDPSK V+VM TTD  YT   K PKV WARQV
Sbjct:   89 AHADADEFIDGVDGITARVQL-SSVLTNLWVYIDPRRLSEGRALGTSVETVGLDPSKGVVVMLTTDYGYTSSSKCPKVLWARQV 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14684.3359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JD35_9PHAE3.920e-6784.40PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7G899_ECTSI2.090e-5980.71UBA/TS-N domain containing protein n=1 Tax=Ectocar... [more]
A0A6H5J7F0_9PHAE4.920e-1253.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G896_ECTSI5.890e-1052.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14684contigE-fasciculatus_F_contig14684:332..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue7.9e-54
Seed eggNOG ortholog2880.D7G899
Preferred namePARP8
KEGG koko:K15258
GOsGO:0005575,GO:0005622,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0120035,GO:1900006,GO:2000026
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGs28HD2@1,2QPRC@2759
EC2.4.2.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-19_004120.4
Exons5
Model size1141
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14684.3359.1prot_E-fasciculatus_F_contig14684.3359.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14684 1507..3169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927952.4180753-UTR-E-fasciculatus_F_contig14684:331..4521622927952.4180753-UTR-E-fasciculatus_F_contig14684:331..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14684 332..452 +
1695995764.3605616-UTR-E-fasciculatus_F_contig14684:331..4521695995764.3605616-UTR-E-fasciculatus_F_contig14684:331..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14684 332..452 +
1622927952.431511-UTR-E-fasciculatus_F_contig14684:466..5311622927952.431511-UTR-E-fasciculatus_F_contig14684:466..531Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14684 467..531 +
1695995764.3737297-UTR-E-fasciculatus_F_contig14684:466..5311695995764.3737297-UTR-E-fasciculatus_F_contig14684:466..531Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14684 467..531 +
1622927952.4523323-UTR-E-fasciculatus_F_contig14684:964..15061622927952.4523323-UTR-E-fasciculatus_F_contig14684:964..1506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14684 965..1506 +
1695995764.382401-UTR-E-fasciculatus_F_contig14684:964..15061695995764.382401-UTR-E-fasciculatus_F_contig14684:964..1506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14684 965..1506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927952.469764-CDS-E-fasciculatus_F_contig14684:1506..16591622927952.469764-CDS-E-fasciculatus_F_contig14684:1506..1659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14684 1507..1659 +
1695995764.3932533-CDS-E-fasciculatus_F_contig14684:1506..16591695995764.3932533-CDS-E-fasciculatus_F_contig14684:1506..1659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14684 1507..1659 +
1622927952.4873114-CDS-E-fasciculatus_F_contig14684:2333..25161622927952.4873114-CDS-E-fasciculatus_F_contig14684:2333..2516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14684 2334..2516 +
1695995764.4082835-CDS-E-fasciculatus_F_contig14684:2333..25161695995764.4082835-CDS-E-fasciculatus_F_contig14684:2333..2516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14684 2334..2516 +
1622927952.4992309-CDS-E-fasciculatus_F_contig14684:3094..31691622927952.4992309-CDS-E-fasciculatus_F_contig14684:3094..3169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14684 3095..3169 +
1695995764.419308-CDS-E-fasciculatus_F_contig14684:3094..31691695995764.419308-CDS-E-fasciculatus_F_contig14684:3094..3169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14684 3095..3169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14684.3359.1

>prot_E-fasciculatus_F_contig14684.3359.1 ID=prot_E-fasciculatus_F_contig14684.3359.1|Name=mRNA_E-fasciculatus_F_contig14684.3359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
MSDEEPYDGNHNSNGSLPDDDMDQQEEEGSDYDSEYAYESDGEVGSSTKG
MDLAKADADALTVDLDGMFAKVEAHTSTLIRLWVCVEHGRLFEGLAPRAV
EALGLDPSKDVMVMFTTDEDYTGCKKPKVQWARQVDP
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mRNA from alignment at E-fasciculatus_F_contig14684:332..3169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14684.3359.1 ID=mRNA_E-fasciculatus_F_contig14684.3359.1|Name=mRNA_E-fasciculatus_F_contig14684.3359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2838bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14684:332..3169+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAATGAAGGCAATCGCGTCCATTGTGCGTGCGTCCGTCGTCCGATTTCTC
CCGGAAGGGCATGTATTAAACCTCGCGGTAACTTGCCGGACCCCATCAGT
TGGAGTCCACCGCTGAGAAAAGCCACAACGCTGAGTGTTGATGTTTTGAT
CGAAAAAGAGGAGTAGGTGGTACATGTAGACAGGACATATAGACTATACG
GTAGACATGTCTACCACTGCAGCACACGTTGATGGTTTAGACAACACCAA
CAACGGAAGACACCAGTGAGATGCACACACAGCAATACCCACTGGCCTCC
TCAGCAACCCATCAGAGAAACACAGCCAGCCGATATAAGGTCCCAGAACC
ACGAAGAAAAAAAGTCGGTGTGTCGGCACACACGTGCGACAAGCGCCCGA
GAAAACCCGTGTATGCATACACATCGACCCCTCGGTTGTCAAAGACCTAC
AACACATGTACAGCAGTACCCCGTGTACAATAAGTGCGGCATACAGTTTC
CTGATTCAATTTGAGCCGACGTGAAGCGGGCGGGTCGCCGCTGTGGTAGG
CACCTGCAATCGCCGGTAGGGGGGGCAGCTTAGCTTGGGCGTTTTGCCTG
GTATCTTGCGTGAGTAGCATGTTCTAATATTAGTTGTCAACGGGTTATTC
TAGTTGCAACCCCTATGCATATGGTTTTTCTGAGCACGCAGCACTGACTG
AAGAGCAGGGTGCGAAACAAATATGTTGGCTTGATTGTATTATCTCGGGA
TCGACCCCAACCACATTAACAAAGTCTTTGCGAAAGGGTGGTGACGCTTT
GCTGTGTTTCTGCTGCACCCGGTGTGGTTGTAGTGGGCTTTGGTCCGACC
TGCGTCGCTCGATCGCTGGGACTTTCGGAGATGGCCACATCACCACAGTG
GCGTTTTCACACCAAGTGGAGCACAATGAACTATAGGCGGCAACTACTGA
CACCCTCTCATCCACCGTCCAAGGAACAGGTACCAGGTACAACCGCGCGG
CGAGGACGAAGACAGAGGATCAGATCAACCCCAGGACACCCAACGGCATC
GTTGACATAAGCATCAGCACCGACTAACAAGAGGCGCCACGTGACGCGCC
GCCGGTAGCGAGAGTGGAACACACGGAAACCACCACCACCACCACCACCA
CCACTACCACAACTTTTTGGCCATAATGTCCGACGAGGAGCCCTACGACG
GCAACCACAACAGTAACGGAAGCTTGCCAGACGATGACATGGACCAGCAG
GAGGAGGAGGGTTCGGACTACGACTCCGAATACGCCTATGAGTCTGACGG
CGAGGTTGGGAGCTCGACAAAGGGAATGGTGCGCCTGCGTGCGGGTTTTT
CTGCGTTTGATTCCTTCGTTTAGCGCCCCGCGGGTTCTATGCCGCTCTTC
TGCACGTGCACTTGCGGGGTACTTTTGGTCGTGGGCGGTAGCAGACGGTA
GAGTCCAGGGAGGCGTTGTCCTTTGAAGAAATCTGGCGAAATTGTAGTAT
GTCCTAATGCATTAGAACCAGAGTAGCTTGCAGCGCTAACCCCCCGGTCC
CGCTGGCCCTCCGAGCATCATGGTAGCGATCCTTCTACCCTTGTGTACCA
CTATCTGCAGGGCAGCATGCCATCTCGCGCAGCCCTTGCCGCCCCCCCCT
TTCGAAATGTCGCTAGTGGGAAGTCTGCCTGGTCGGCACTACAGTTGTAG
TCGGCGGTTGCCCGTCCCGGCTCCATGCGGAAAAGGCCAAGACGGATGGA
ATGGAAGAATGCCCTATACGTTTTTCTAGTCGAGCATGCATACCGTTCCA
TTTCCCGTGGCGTGGTGGTTTTCTCTGCGGGTATGCTGCAACGTTGCGAA
CGTAAATTTTCAACTATTCAACGATGCACAACAACATCAAGCAGCTCACG
GCGGCCCACAGCCCAGCGAATTATACAGTCCGCACTCAGTCCACTCCCTC
CCCCGCCGCCGGCCCGCCATCCCCGCCCCTGGGTGCAACAACCGCCTGCC
AGGACCTCGCCAAGGCCGACGCCGACGCCCTGACCGTGGACCTGGATGGC
ATGTTCGCCAAGGTGGAGGCCCACACGTCAACCCTCATCCGCCTCTGGGT
GTGCGTGGAGCACGGGAGGCTGTTCGAGGGCCTCGCCCCGAGGGCCGTGG
AGGCCCTAGGCCTGGACCCCTCCAAGGACGTGATGGTAGGTGTGCGGCGT
CTTCGTGCCTAGTCTTATGTCGTAGAAGTTCCTGTGATGCTGCTGCGCTC
TACCTCCTTTTGTGTCGAGTCTAATGGCGTAGAACTTCCTATGTATGATA
CTGCTGTTACCTTTTTTTTGTCGATGATTTCGTCGTCCGTTGTTGAGTGA
TGAGCGCCACCGTTGCGCACAGAAAACAGGGGGCGTTGCGCGACCCTGGA
ATGTCTGTTTCAGCGTTTTGTTTTGTTTTCAGCGTTTTGTTTTGTTTTTT
GGTTCTCTTCGTTTTGTCGGGATATGGCCCAACCGTGCGAACGCGACGCA
TCACACGACGCTTGTTTAGCGCGCACTTGACGAGAGAGCACCAAGCGTCC
GTTCGATTTTACACGTATTTGACGACAAGCAGCTTAGAAAGTTCCTGAAC
CTTGCCGGTCCAAATTGTACTTCCAAAAACCCACAGAAAGAGCTGTCCAC
CAAGTCTATCTAGAGCCCCCTGAGCGCCGCCGAAGGCTTACGTCGTGGTG
CCTGCGCTTGACGCCGTCTTTGCTGCTTGTGGTGTGGTGGTGGTGGTGGT
GCTGTTTGTGCAGGTTATGTTCACGACAGACGAAGATTATACTGGATGCA
AAAAGCCGAAGGTGCAGTGGGCGAGGCAGGTGGACCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14684:332..3169+

>mRNA_E-fasciculatus_F_contig14684.3359.1 ID=mRNA_E-fasciculatus_F_contig14684.3359.1|Name=mRNA_E-fasciculatus_F_contig14684.3359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14684:332..3169+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGACGAGGAGCCCTACGACGGCAACCACAACAGTAACGGAAGCTT
GCCAGACGATGACATGGACCAGCAGGAGGAGGAGGGTTCGGACTACGACT
CCGAATACGCCTATGAGTCTGACGGCGAGGTTGGGAGCTCGACAAAGGGA
ATGATGTCCGACGAGGAGCCCTACGACGGCAACCACAACAGTAACGGAAG
CTTGCCAGACGATGACATGGACCAGCAGGAGGAGGAGGGTTCGGACTACG
ACTCCGAATACGCCTATGAGTCTGACGGCGAGGTTGGGAGCTCGACAAAG
GGAATGGACCTCGCCAAGGCCGACGCCGACGCCCTGACCGTGGACCTGGA
TGGCATGTTCGCCAAGGTGGAGGCCCACACGTCAACCCTCATCCGCCTCT
GGGTGTGCGTGGAGCACGGGAGGCTGTTCGAGGGCCTCGCCCCGAGGGCC
GTGGAGGCCCTAGGCCTGGACCCCTCCAAGGACGTGATGGACCTCGCCAA
GGCCGACGCCGACGCCCTGACCGTGGACCTGGATGGCATGTTCGCCAAGG
TGGAGGCCCACACGTCAACCCTCATCCGCCTCTGGGTGTGCGTGGAGCAC
GGGAGGCTGTTCGAGGGCCTCGCCCCGAGGGCCGTGGAGGCCCTAGGCCT
GGACCCCTCCAAGGACGTGATGGTTATGTTCACGACAGACGAAGATTATA
CTGGATGCAAAAAGCCGAAGGTGCAGTGGGCGAGGCAGGTGGACCCCGTT
ATGTTCACGACAGACGAAGATTATACTGGATGCAAAAAGCCGAAGGTGCA
GTGGGCGAGGCAGGTGGACCCC
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