mRNA_E-fasciculatus_F_contig14675.3352.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14675.3352.1
Unique NamemRNA_E-fasciculatus_F_contig14675.3352.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: D8LQF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF5_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 7.150e-35
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1
Query:   10 QSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGEDQTVA 201
            +SIKMVTKQSP GSFDLYITRFLDE GNTLLSAMLHGVDGAYEPGAADYW+KLRKTFGEDQ+VA
Sbjct:  142 KSIKMVTKQSPGGSFDLYITRFLDEEGNTLLSAMLHGVDGAYEPGAADYWDKLRKTFGEDQSVA 205          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A835YGN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.780e-13
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   16 IKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGEDQTV 198
            I M+TK +   S DLYITRF+D  G T+LSAML    G YE GA  YW KLR+ FG +Q +
Sbjct:  118 ITMLTKPAKDASHDLYITRFVDAEGKTVLSAMLQAEGGQYEEGAVAYWTKLREAFGAEQKL 178          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A7S1SS16_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SS16_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.920e-10
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   16 IKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGEDQTVA 201
            +KMV  +   G +D+Y   FL E G  +L+ +LHG +G YEPGA + WE LR   GE  TVA
Sbjct:  129 VKMVKARPRTGEYDIYKVSFLREDGGPMLTCLLHGPEGNYEPGAIEAWEALRAKNGETVTVA 190          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A7S0WNZ8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WNZ8_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 4.680e-10
Identity = 24/62 (38.71%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   10 QSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGEDQT 195
            + IKM+  ++    +D+Y++RF+++ G  +LSA+LHGVDG Y+  A + W  + + +GE QT
Sbjct:   49 KEIKMLKTKARLADYDVYVSRFVNDYGKPMLSAVLHGVDGNYDAAAVEAWTAVLEKYGETQT 110          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A2J8A500_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A500_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 6.950e-10
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   10 QSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGE 186
            + ++    ++ AG +DLY TRF+ + G  L+S +LHG  GAYEP A + W  L   +GE
Sbjct:   32 KEVRFAKSKAKAGDYDLYATRFVGDEGRVLMSVILHGQQGAYEPAAVEAWGGLAAKYGE 90          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A150GY36_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GY36_GONPE)

HSP 1 Score: 58.2 bits (139), Expect = 7.470e-9
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 1
Query:   10 QSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGEDQT 195
            + ++    ++ AG +D+Y TRF  E G  +LS +LHG  GAY+P A   W  L   +G+  T
Sbjct:  103 KEVRFAKSKAKAGDYDIYATRFYGEDGKVMLSTILHGSQGAYDPAAVQAWTSLASKYGDSVT 164          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A8J4GBI9_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GBI9_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 2.010e-8
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 1
Query:   10 QSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGEDQT 195
            + +K V  ++ +G +D+Y TRFL      L+S +LHG  G Y+P A + W  L   +GE  T
Sbjct:  101 REVKFVKSKAKSGEYDIYATRFLGADSKVLMSCLLHGQQGQYDPAAVEAWTNLATKYGESVT 162          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: D8UG91_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UG91_VOLCA)

HSP 1 Score: 55.8 bits (133), Expect = 2.860e-8
Identity = 23/62 (37.10%), Postives = 34/62 (54.84%), Query Frame = 1
Query:   10 QSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGEDQT 195
            + +K    ++ +G +D+Y TRFL   G  L+S +LHG  G Y+P A   W  L   +GE  T
Sbjct:   64 KEVKFAKSKAKSGEYDIYATRFLGPDGKVLMSCLLHGNQGVYDPSAVAAWTSLATKYGETVT 125          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A2K3DK90_CHLRE (Uncharacterized protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DK90_CHLRE)

HSP 1 Score: 56.2 bits (134), Expect = 3.840e-8
Identity = 24/59 (40.68%), Postives = 34/59 (57.63%), Query Frame = 1
Query:   10 QSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGE 186
            + IK    ++ AG +D+Y TRF  E G  +LS +LHG  G Y+P A   W  L + +GE
Sbjct:   99 KEIKFAKSKAKAGDYDVYATRFFGEDGKVMLSCVLHGSAGQYDPKAVAAWNSLAQKYGE 157          
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Match: A0A835Y4H2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y4H2_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 3.130e-7
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   34 QSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAADYWEKLRKTFGE 186
            ++ AG +D+Y  RF  E G  LL+ +LHG  G Y+P A + W+KL + +G+
Sbjct:  110 KAKAGDYDVYAIRFQGEEGKMLLTCLLHGQAGVYQPAAVEAWKKLHEKYGD 160          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14675.3352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LQF5_ECTSI7.150e-3592.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGN4_9STRA4.780e-1354.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1SS16_9CHLO1.920e-1046.77Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S0WNZ8_9CHLO4.680e-1038.71Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A2J8A500_9CHLO6.950e-1040.68Uncharacterized protein (Fragment) n=1 Tax=Tetraba... [more]
A0A150GY36_GONPE7.470e-937.10Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4GBI9_9CHLO2.010e-837.10Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
D8UG91_VOLCA2.860e-837.10Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A2K3DK90_CHLRE3.840e-840.68Uncharacterized protein n=4 Tax=Chlamydomonas TaxI... [more]
A0A835Y4H2_9CHLO3.130e-741.18Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14675contigE-fasciculatus_F_contig14675:858..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue7e-27
Seed eggNOG ortholog2880.D8LQF5
EggNOG OGs28J5U@1,2SDH4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_005430.1
Exons1
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.7924416-CDS-E-fasciculatus_F_contig14675:857..10611622927951.7924416-CDS-E-fasciculatus_F_contig14675:857..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14675 858..1061 +
1695995764.1002789-CDS-E-fasciculatus_F_contig14675:857..10611695995764.1002789-CDS-E-fasciculatus_F_contig14675:857..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14675 858..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14675.3352.1prot_E-fasciculatus_F_contig14675.3352.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14675 858..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14675.3352.1

>prot_E-fasciculatus_F_contig14675.3352.1 ID=prot_E-fasciculatus_F_contig14675.3352.1|Name=mRNA_E-fasciculatus_F_contig14675.3352.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=68bp
MATQSIKMVTKQSPAGSFDLYITRFLDEAGNTLLSAMLHGVDGAYEPGAA
DYWEKLRKTFGEDQTVA*
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mRNA from alignment at E-fasciculatus_F_contig14675:858..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14675.3352.1 ID=mRNA_E-fasciculatus_F_contig14675.3352.1|Name=mRNA_E-fasciculatus_F_contig14675.3352.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=204bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14675:858..1061+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAACTCAGAGTATCAAGATGGTGACGAAGCAGAGTCCTGCCGGGTC GTTCGACTTGTACATCACTCGTTTCTTGGACGAGGCTGGAAACACGCTGC TCTCCGCGATGCTGCACGGCGTGGACGGCGCGTACGAGCCCGGGGCCGCC GACTACTGGGAGAAGCTGAGGAAGACCTTCGGAGAGGACCAAACCGTTGC ATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14675:858..1061+

>mRNA_E-fasciculatus_F_contig14675.3352.1 ID=mRNA_E-fasciculatus_F_contig14675.3352.1|Name=mRNA_E-fasciculatus_F_contig14675.3352.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14675:858..1061+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAACTCAGAGTATCAAGATGGTGACGAAGCAGAGTCCTGCCGGGTC
GTTCGACTTGTACATCACTCGTTTCTTGGACGAGGCTGGAAACACGCTGC
TCTCCGCGATGCTGCACGGCGTGGACGGCGCGTACGAGCCCGGGGCCGCC
GACTACTGGGAGAAGCTGAGGAAGACCTTCGGAGAGGACCAAACCGTTGC
ATAGATGGCAACTCAGAGTATCAAGATGGTGACGAAGCAGAGTCCTGCCG
GGTCGTTCGACTTGTACATCACTCGTTTCTTGGACGAGGCTGGAAACACG
CTGCTCTCCGCGATGCTGCACGGCGTGGACGGCGCGTACGAGCCCGGGGC
CGCCGACTACTGGGAGAAGCTGAGGAAGACCTTCGGAGAGGACCAAACCG
TTGCATAG
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