mRNA_E-fasciculatus_F_contig14655.3340.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14655.3340.1
Unique NamemRNA_E-fasciculatus_F_contig14655.3340.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14655.3340.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.690e-7
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    7 RGVSTGRSAAAVAAGISRGGMSARSHLHQMQQ 102
            RGVSTGRSAAA AAGISRGGMSARSHLHQMQQ
Sbjct:  545 RGVSTGRSAAAXAAGISRGGMSARSHLHQMQQ 576
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14655.3340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMF9_9PHAE5.690e-796.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14655contigE-fasciculatus_F_contig14655:473..1800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.271298-CDS-E-fasciculatus_F_contig14655:472..6791622927950.271298-CDS-E-fasciculatus_F_contig14655:472..679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14655 473..679 -
1695995763.2835948-CDS-E-fasciculatus_F_contig14655:472..6791695995763.2835948-CDS-E-fasciculatus_F_contig14655:472..679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14655 473..679 -
1622927950.2879772-CDS-E-fasciculatus_F_contig14655:1698..18001622927950.2879772-CDS-E-fasciculatus_F_contig14655:1698..1800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14655 1699..1800 -
1695995763.2930882-CDS-E-fasciculatus_F_contig14655:1698..18001695995763.2930882-CDS-E-fasciculatus_F_contig14655:1698..1800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14655 1699..1800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14655.3340.1prot_E-fasciculatus_F_contig14655.3340.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14655 473..1800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14655.3340.1

>prot_E-fasciculatus_F_contig14655.3340.1 ID=prot_E-fasciculatus_F_contig14655.3340.1|Name=mRNA_E-fasciculatus_F_contig14655.3340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
AARGVSTGRSAAAVAAGISRGGMSARSHLHQMQQHAAEAPGPARRYTTHE
GYDDNLHYLPSTNATPSLRQRGDSLHSHISSSSSSNRGGGGGGVGTSGGH
GGA
back to top

mRNA from alignment at E-fasciculatus_F_contig14655:473..1800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14655.3340.1 ID=mRNA_E-fasciculatus_F_contig14655.3340.1|Name=mRNA_E-fasciculatus_F_contig14655.3340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1328bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14655:473..1800- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCCCGGGGAGTGTCGACAGGGAGGTCCGCGGCGGCCGTTGCGGCGGG
TATCAGCCGAGGGGGCATGAGCGCTCGCTCTCACTTGCACCAGATGCAGC
AGGTGCGTGTTCGATGCCCGTGGTCGGGTTGGGGCCCCGACCTTTTGTTA
CGCTGTGCAGATGACGGGTTTTGTACGTGTACCTGAGAAGCTGTTGCTTC
GCGTAGGGTCAGGCGAGTTTTTTTTTATTCTTTGTCTTCACTTCAAGCTA
GCGCTCATAACATCTGTGCCGTTTACTCCACCCCGTGGCCGGTCTCACAG
AAAAGGCGCCCCTACAGCACCACCCCTCCCGCGGTGCTTTGCGTTCGATT
TTTTTTATGCGAGAACAATGCAGCACTCTCTTCCCCTCTGTGTCCACACG
AACTAGACAGCGCGCGGACGACTAGACGGTGTGCCCGAACTGCAGATTGA
ATTAATTCGGGACAGATGCGTGAGGTGTGCCGCCCGAAACCTGGCGTGAT
GCAAAACCAGAAGCAGTGGCAACAGCTGGATATTGTGGAACACACGAATA
TATATATATAGTTTTTTTTTTTTTCCAGGAGACGTGGTTGGGGTTAAGAC
CCGTGTTCTGCTTGCGAGTTTTTTTACCTGGCCACACCTCCTCTCTGCGA
GTATCAGCACATCAGCACGCCATTGCTGCATGTGCCCGAGTTTTGGGGTG
TGGCATGCACCGGCGAGTCAGTCACGACGCCTGTCTCTCTCTCTTGGGCG
TTTTATGCCTCCCATCCCGCGGTGTCTGTCTCAATTCCATGTTCCATATT
GTCTACCTCCCGTCCCACCATGTCTGCCTCCCATCCCCCGCCTTTTCCGT
CTCCATTCCGCATTGTCTGCCTCTATTCCGCGGCGTCTGTCTCATTGACG
CGTTTTCTGCCTCCCATCCCCCGCCTTGTCCGTGTCCATTCCGCCTTATC
CGTCTCCATTCCGCGGTGTCTGTCTCCATTCCATGTTCCATATTGTTTAC
CTCCCGTCCCACCATGTCTGCCTCCCATCCCCCGCCTTGTCCGTGTCCAT
TCCGCCTTATCCGTCTCCATTCCGCCTTGTCTGCCTCCCGTCCCGCGCTT
GCCTGTCCCTGTGCTTGCCAGCACGCGGCCGAAGCACCCGGGCCCGCGCG
CAGGTACACCACCCACGAGGGCTACGACGACAACCTCCACTACCTCCCGT
CGACCAACGCAACCCCTTCGCTCCGGCAGCGAGGAGACAGCCTCCACAGC
CACATCAGCAGCAGCAGCAGCAGCAACAGGGGCGGCGGCGGCGGCGGCGT
CGGCACTAGTGGTGGGCACGGCGGAGCA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14655:473..1800-

>mRNA_E-fasciculatus_F_contig14655.3340.1 ID=mRNA_E-fasciculatus_F_contig14655.3340.1|Name=mRNA_E-fasciculatus_F_contig14655.3340.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14655:473..1800- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCCCGGGGAGTGTCGACAGGGAGGTCCGCGGCGGCCGTTGCGGCGGG
TATCAGCCGAGGGGGCATGAGCGCTCGCTCTCACTTGCACCAGATGCAGC
AGGCGGCCCGGGGAGTGTCGACAGGGAGGTCCGCGGCGGCCGTTGCGGCG
GGTATCAGCCGAGGGGGCATGAGCGCTCGCTCTCACTTGCACCAGATGCA
GCAGCACGCGGCCGAAGCACCCGGGCCCGCGCGCAGGTACACCACCCACG
AGGGCTACGACGACAACCTCCACTACCTCCCGTCGACCAACGCAACCCCT
TCGCTCCGGCAGCGAGGAGACAGCCTCCACAGCCACATCAGCAGCAGCAG
CAGCAGCAACAGGGGCGGCGGCGGCGGCGGCGTCGGCACTAGTGGTGGGC
ACGGCGGAGCACACGCGGCCGAAGCACCCGGGCCCGCGCGCAGGTACACC
ACCCACGAGGGCTACGACGACAACCTCCACTACCTCCCGTCGACCAACGC
AACCCCTTCGCTCCGGCAGCGAGGAGACAGCCTCCACAGCCACATCAGCA
GCAGCAGCAGCAGCAACAGGGGCGGCGGCGGCGGCGGCGTCGGCACTAGT
GGTGGGCACGGCGGAGCA
back to top