mRNA_E-fasciculatus_F_contig14621.3329.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14621.3329.1
Unique NamemRNA_E-fasciculatus_F_contig14621.3329.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14621.3329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14621contigE-fasciculatus_F_contig14621:2329..2968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size641
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.700292-UTR-E-fasciculatus_F_contig14621:2328..24761622927948.700292-UTR-E-fasciculatus_F_contig14621:2328..2476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14621 2329..2476 +
1695995762.5477161-UTR-E-fasciculatus_F_contig14621:2328..24761695995762.5477161-UTR-E-fasciculatus_F_contig14621:2328..2476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14621 2329..2476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.7187715-CDS-E-fasciculatus_F_contig14621:2476..29681622927948.7187715-CDS-E-fasciculatus_F_contig14621:2476..2968Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14621 2477..2968 +
1695995762.5579326-CDS-E-fasciculatus_F_contig14621:2476..29681695995762.5579326-CDS-E-fasciculatus_F_contig14621:2476..2968Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14621 2477..2968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14621.3329.1prot_E-fasciculatus_F_contig14621.3329.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14621 2477..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14621.3329.1

>prot_E-fasciculatus_F_contig14621.3329.1 ID=prot_E-fasciculatus_F_contig14621.3329.1|Name=mRNA_E-fasciculatus_F_contig14621.3329.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MHAYPCRGSPLNRRACSILRSRFIGRSVGAVDANEQIQAHTHVRKYFPIC
PSRYACRPVNLLDRFVKSFFTVLKPAIFNQMPQIHPGTCDHWWCRSKIHQ
PLNENKAYLNVSPVQLQQSTAYSTSRHLSCSAPTTQSLPPQHLLSYNFWR
SLLDLHSTTPPTAL
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mRNA from alignment at E-fasciculatus_F_contig14621:2329..2968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14621.3329.1 ID=mRNA_E-fasciculatus_F_contig14621.3329.1|Name=mRNA_E-fasciculatus_F_contig14621.3329.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=640bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14621:2329..2968+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCAAGAGAGCAAAAGTTTCGGCCTCCCACACGACAGCCGCCGAAAGGG
CACAAGAATCTCGGAAAATAGGGCAGTGAACACAAAGGAGGACGGTGCGC
ACGAACCAGCAACAACACGCGGAGAGACGCCACAGTGCATGTCGACACAT
GCATGCTTATCCCTGTCGGGGGAGCCCGCTGAACAGACGAGCGTGTTCCA
TTTTACGGTCCCGCTTCATCGGTCGGTCAGTGGGGGCGGTCGATGCGAAT
GAACAGATACAAGCACACACACACGTGCGAAAATACTTCCCTATCTGTCC
GTCGCGCTACGCATGCCGGCCAGTCAACTTGCTCGACCGCTTCGTCAAGT
CATTCTTCACCGTACTCAAACCGGCAATCTTTAACCAAATGCCGCAAATA
CACCCCGGTACTTGTGACCACTGGTGGTGTAGAAGCAAAATACATCAGCC
CCTGAACGAAAACAAAGCCTACCTTAACGTCTCCCCTGTTCAACTTCAAC
AGAGCACGGCCTACTCAACATCTCGACACCTTTCCTGCTCAGCTCCAACA
ACGCAGAGCCTGCCTCCTCAACATCTTCTCTCTTACAATTTCTGGCGGTC
GCTCCTGGACCTGCACTCCACAACCCCCCCTACAGCTCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14621:2329..2968+

>mRNA_E-fasciculatus_F_contig14621.3329.1 ID=mRNA_E-fasciculatus_F_contig14621.3329.1|Name=mRNA_E-fasciculatus_F_contig14621.3329.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14621:2329..2968+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATGCTTATCCCTGTCGGGGGAGCCCGCTGAACAGACGAGCGTGTTC
CATTTTACGGTCCCGCTTCATCGGTCGGTCAGTGGGGGCGGTCGATGCGA
ATGAACAGATACAAGCACACACACACGTGCGAAAATACTTCCCTATCTGT
CCGTCGCGCTACGCATGCCGGCCAGTCAACTTGCTCGACCGCTTCGTCAA
GTCATTCTTCACCGTACTCAAACCGGCAATCTTTAACCAAATGCCGCAAA
TACACCCCGGTACTTGTGACCACTGGTGGTGTAGAAGCAAAATACATCAG
CCCCTGAACGAAAACAAAGCCTACCTTAACGTCTCCCCTGTTCAACTTCA
ACAGAGCACGGCCTACTCAACATCTCGACACCTTTCCTGCTCAGCTCCAA
CAACGCAGAGCCTGCCTCCTCAACATCTTCTCTCTTACAATTTCTGGCGG
TCGCTCCTGGACCTGCACTCCACAACCCCCCCTACAGCTCTGATGCATGC
TTATCCCTGTCGGGGGAGCCCGCTGAACAGACGAGCGTGTTCCATTTTAC
GGTCCCGCTTCATCGGTCGGTCAGTGGGGGCGGTCGATGCGAATGAACAG
ATACAAGCACACACACACGTGCGAAAATACTTCCCTATCTGTCCGTCGCG
CTACGCATGCCGGCCAGTCAACTTGCTCGACCGCTTCGTCAAGTCATTCT
TCACCGTACTCAAACCGGCAATCTTTAACCAAATGCCGCAAATACACCCC
GGTACTTGTGACCACTGGTGGTGTAGAAGCAAAATACATCAGCCCCTGAA
CGAAAACAAAGCCTACCTTAACGTCTCCCCTGTTCAACTTCAACAGAGCA
CGGCCTACTCAACATCTCGACACCTTTCCTGCTCAGCTCCAACAACGCAG
AGCCTGCCTCCTCAACATCTTCTCTCTTACAATTTCTGGCGGTCGCTCCT
GGACCTGCACTCCACAACCCCCCCTACAGCTCTG
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