mRNA_E-fasciculatus_F_contig1459.3304.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1459.3304.1 vs. uniprot
Match: D7FQ05_ECTSI (Ankyrin repeat domain 16 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ05_ECTSI) HSP 1 Score: 2149 bits (5569), Expect = 0.000e+0 Identity = 1174/1333 (88.07%), Postives = 1216/1333 (91.22%), Query Frame = 1
Query: 100 MLEVLREQDEERRLYAAPLATSLLRSCGSETAGGSNRARERAQATVHEALRCLKANTGNSNRNSAHYDGPESLLGDPLFDKEFGGALNSWVGDQRETAGPAWLGGATQDNGETFFEPENNHGAIVTSVRLTGGTADEHYQHRPPSKADVRREGLLSATSRVTRHHMEPEWAAVELLDCIKEELTPRREAEQQQHERSSQMMLDAIRVLPAPEAGDLFVTCAARGHVGVVLFYFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGADDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAGSSDPEVAGRSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYMVEWRPMRSRPVCPAHSRHVAERVRPPRKGKKKRGRAGWQGAEVRPGTAEEACTTSHQAFSTGGAAAETGRGRDALGTASASSLRRPNTGGGETTADEALPWKSHEVGTFPLRLKHLHPATNYMVRVSARTLAGYGIPSREALLRTRVSPPSAPKEAANMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDQHHPDWDKGRVLAKTESSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSICSASKAQTEATQIPADAPACVGSHVELGSTEESGVKLPSVSGGGSKTG-TMGEDKKQIGVWIGRRTEKLSPYHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPVKRGATQMLMRWFNKPDGEVLRWELSRRVFKYGTDFRGDNDDSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPRTRQLASDPLMVGGMVDTGALLSADAEEPATSCTRRGGNRNRGXXXXXX----ADGMGSVDAGGDAACSRRTGAAAXXAAVVRGKARAEEDFADTGRDVDGCADVGGESRYEGDSSDSYGDDERTETNGDRGAGEVVVKVARKSTVNGDGGAEVMEIELDDRDKRARTGRDDEERSRRRTHEAISQEEEHDEVGMGHTGAREVRLSNDETESIGESPFLPALSGDAATDRSHGEREEGKSREDESVEDLATTTELSSNASTTMVLEWDAGCSNGSLTTNYEVWGVADSTQGQDKTSGSGEWTLVALTEAAPTATLSGLREAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGVTWLALKLRAPPGAGLLLGFEMHMCRWTPGMSEGEEAWSLVVDTQREQGGREGPSNSXXXXXXXXXXXXXXXXEESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARRF 4083
MLE LREQ+EERRL A PLATSLLRSCGS TAGGSNRARERAQATVHEALRCLKANTGNSNRNSAH DGPESLLGD L DKEFGGALNSWVGDQRETAGPAWLGG TQD+ +TFFE NN+GAIVTSVR+ GGTAD+H+QHRPPSKAD+RRE LLSA SRVTRHH+EPEWAAVELLDCI+EELTPRRE EQQQ +RSSQMMLDAIRVLPAPEAGD+FVTCAARGHVGVVLFYFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGA+DRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMA SSDPEVA RSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGY+VEWRPMRSRPVCPAHSRHVAERVRPPRKGKKKRGRAGWQGAE+RPGTAEEACTTSHQAFS GG RDALG ASASSLRRPNTGGGETTADEALPWK EV FPLRLKHL+PATNYMVRVSA+TLAGYG+PSREALLRTRVSPPSAPKEAANMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLD+HHPDWDKGRVLAKT SSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ATQ PA+ PACVGS VE GSTEES VKLPSVSGG M EDKK+IGVWIGRRT+KLSPYHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILP+KRGATQMLMRWFNKPDG+VLRWELSRRVFKYGTDFRGDNDDSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACP TRQLASDPL+VGGMVDTGALLSADAEEPATS RG NR GXXXXXX DG GSVDAGGDAA SRRT AAA AAVVRGKARAEEDFADTGRDV+GCAD G ESRY+G SS S GDD RTET+GD+GAGE V K A KS V+G+G AEVM +E+ D DK RT RDDEE RRRTHEA SQ EE DEVGM TGAR VRLSNDE ESIGESPFLP LSGDA T R+HGE EEGKSREDESVEDLA T +L S+ASTTMVLEWDAGC+NGS+TTNYEVWGVADSTQGQDKTSGSG+WTLVALT+AAPTATLSGLREAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRG+TWLALKLRAPPGAGLLLGFEMHMCRW PGMSEGEE W LVVD+QREQGGRE XXXXXXXXXXXXXXXXEESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARRF
Sbjct: 1 MLEALREQEEERRLCAGPLATSLLRSCGSVTAGGSNRARERAQATVHEALRCLKANTGNSNRNSAHRDGPESLLGDLLLDKEFGGALNSWVGDQRETAGPAWLGGVTQDSDQTFFEQRNNNGAIVTSVRVIGGTADQHHQHRPPSKADIRREDLLSAISRVTRHHIEPEWAAVELLDCIEEELTPRREGEQQQLQRSSQMMLDAIRVLPAPEAGDVFVTCAARGHVGVVLFYFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGAEDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAASSDPEVAERSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYLVEWRPMRSRPVCPAHSRHVAERVRPPRKGKKKRGRAGWQGAEIRPGTAEEACTTSHQAFSMGGD-------RDALGAASASSLRRPNTGGGETTADEALPWKRREVEAFPLRLKHLYPATNYMVRVSAQTLAGYGVPSREALLRTRVSPPSAPKEAANMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXATQAPAETPACVGSGVESGSTEESRVKLPSVSGGXXXXXXAMDEDKKKIGVWIGRRTDKLSPYHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLMRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDDSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPCTRQLASDPLVVGGMVDTGALLSADAEEPATSGITRGDNRRDGXXXXXXXXXXVDGRGSVDAGGDAAFSRRTRAAAAAAAVVRGKARAEEDFADTGRDVNGCADAGSESRYDGHSSGSGGDDGRTETHGDQGAGEGVGKAACKSIVHGEGRAEVMGLEVKDWDKCVRTSRDDEEIIRRRTHEATSQAEEQDEVGMEQTGARGVRLSNDEAESIGESPFLPELSGDATTKRNHGELEEGKSREDESVEDLAKTAKLCSSASTTMVLEWDAGCTNGSITTNYEVWGVADSTQGQDKTSGSGKWTLVALTKAAPTATLSGLREAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWRLVVDSQREQGGREXXXXXXXXXXXXXXXXXXXXXEESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARRF 1323
BLAST of mRNA_E-fasciculatus_F_contig1459.3304.1 vs. uniprot
Match: A0A6H5KFL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL4_9PHAE) HSP 1 Score: 1890 bits (4897), Expect = 0.000e+0 Identity = 1054/1264 (83.39%), Postives = 1098/1264 (86.87%), Query Frame = 1
Query: 346 FGGALNSWVGDQRETAGPAWLGGATQDNGETFFEPENNHGAIVTSVRLTGGTADEHYQHRPPSKADVRREGLLSATSRVTRHHMEPEWAAVELLDCIKEELTPRREAEQQQHERSSQMMLDAIRVLPAPEAGDLFVTCAARGHVGVVLFYFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGADDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAGSSDPEVAGRSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYMVEWRPMRSRPVCPAHSRHVAERVRPPRKGKKKRGRAGWQGAEVRPGTAEEACTTSHQAFSTGGAAAETGRGRDALGTASASSLRRPNTGGGETTADEALPWKSHEVGTFPLRLKHLHPATNYMVRVSARTLAGYGIPSREALLRTRVSPPSAPKEAANMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDQHHPDWDKGRVLAKTESSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSICSASKAQTEATQIPADAPACVGSHVELGSTEESGVKLPSVSGGGSKTGTMGEDKKQIGVWIGRRTEKLSPYHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPVKRGATQMLMRWFNKPDGEVLRWELSRRVFKYGTDFRGDNDDSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPRTRQLASDPLMVGGMVDTGALLSADAEEPATSCTRRGGNRNRGXXXXXX--ADGMGSVDAGGDAACSRRTGAAAXXAAVVRGKARAEEDFADTGRDVDGCADVGGESRYEGDSSDSYGDDERTETNGDRGAGEVVVKVARKSTVNGDGGAEVMEIELDDRDKRARTGRDDEERSRRRTHEAISQEEEHDEVGMGHTGAREVRLSNDETESIGESPFLPALSGDAATDRSHGEREEGKSREDESVEDLATTTELSSNASTTMVLEWDAGCSNGSLTTNYEVWGVADSTQGQDKTSGSGEWTLVALTEAAPTATLSGLRE---------------AQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGVTWLALKLRAPPGAGLLLGFEMHMCRWTPGMSEGEEAWSLVVDTQREQGGREGPSNSXXXXXXXXXXXXXXXX-EESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARRF 4083
F ALNSWVGDQRETAGP WLGGATQDN TFFE NN GAIVTSVR+TGGTAD+H+QHRPPSKADVRRE LLSA RVTRHHMEPEWAAVE+LDCI+EELTPRRE +QQQ +RSSQM+LDAIR+LPAPEAGDLFVTCAARGHVGV+L YFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGA+DRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMA SSDPEVA RSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGY+ GA++RPGTAEEACTTSHQAFSTGG GRDALG ASASSLRRPNTGGGETTADE PWK EV TFPLRLKHL+PATNY+VRVSARTLAGYG+PSREALLRTRVSPPSAPKEA NMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLD+HHPDWDKGRVLAKT SSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EATQ A+APAC GS VE GSTEES VKLPSVSGGGS TGTM EDKKQIGVWIGRRT+KLSP+HTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILP+KRGATQML+RWFNKPDG+VLRWELSRRVFKYGTDFRGDND SWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPR RQLASDPL+VGG+VDTGALLSADAEEPATS R+G NR GXXXXXX DG GSVDAG DAA SRRTGAAA AAVVRGK RAEEDFADTGRDV+ CADVG ESRY+GDSSDS GDD RTET+GD+GAGE VV VA KSTVNG+G AEVM +E++DRD R T RDDEER RRRTHEA SQEEE DEVGM TG R VRLSN E ESI ESP LPALS DAAT R+H E EEGKSREDESVE A TT+L S+ASTTMVLEWDAGC+NGS+TTNYEVWGVADSTQGQDKTSGSG+WTLVALTEAAPTATLSGLRE AQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRG+TWLALKLRAPPGAGLLLGFEMHMCRW PGMSEGEE WSLVVD+QRE+ XXXXXXXXXXXXXXXX EESRMVWDLKPGAGYRFKARARTV GWSPGGP SDVYNTARRF
Sbjct: 42 FQNALNSWVGDQRETAGPVWLGGATQDNDLTFFEQGNNDGAIVTSVRVTGGTADQHHQHRPPSKADVRREDLLSAIYRVTRHHMEPEWAAVEILDCIEEELTPRREGKQQQLQRSSQMVLDAIRLLPAPEAGDLFVTCAARGHVGVLLLYFEEGLPIDHSHTTLKYQALHAAVEFGHLDSARLLVAMGAKVDARGGAEDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAASSDPEVAERSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYL---------------------------------------GAKIRPGTAEEACTTSHQAFSTGG-------GRDALGAASASSLRRPNTGGGETTADETFPWKRREVETFPLRLKHLYPATNYIVRVSARTLAGYGVPSREALLRTRVSPPSAPKEAVNMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATQATAEAPACFGSRVESGSTEESRVKLPSVSGGGSGTGTMDEDKKQIGVWIGRRTDKLSPHHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLIRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDGSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPRARQLASDPLVVGGIVDTGALLSADAEEPATSGIRKGDNRRDGXXXXXXXXVDGGGSVDAGRDAAFSRRTGAAAAAAAVVRGKTRAEEDFADTGRDVNDCADVGSESRYDGDSSDSDGDDRRTETHGDQGAGEGVVMVACKSTVNGEGRAEVMGLEVEDRDTRVPTSRDDEERIRRRTHEATSQEEEQDEVGMEQTGVRGVRLSN-EAESIRESPSLPALSCDAATKRNHTELEEGKSREDESVEGFAKTTKLGSSASTTMVLEWDAGCTNGSVTTNYEVWGVADSTQGQDKTSGSGKWTLVALTEAAPTATLSGLREVCKSLCNPPLVSTRQAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWSLVVDSQREEXXXXXXXXXXXXXXXXXXXXXXXXXREESRMVWDLKPGAGYRFKARARTVIGWSPGGPVSDVYNTARRF 1258
BLAST of mRNA_E-fasciculatus_F_contig1459.3304.1 vs. uniprot
Match: A0A7S1XYK0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK0_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.310e-14 Identity = 71/236 (30.08%), Postives = 100/236 (42.37%), Query Frame = 1
Query: 3406 ELSSNASTTMVLEWDAGCSNGSLTTNYEVWGVADSTQGQDKTSGSGEWTLVALTEAAPTATLSGLREAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGVTWLALKLRAPPGAGLLLGFEMHMCRWTPGMSEGEEAW----------SLVVDTQREQGGREGPSNSXXXXXXXXXXXXXXXXE-ESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARR 4080
+LS + ++ L W A NG++ Y++W D G W ++ TA + L YRF+VRARN +GWSEFG + V N + P PE+V G +W+ LK P ++ FE++M ++ EE W ++V +GG + E S V DLK Y+FK R T FGWSP G SDV RR
Sbjct: 818 DLSLCSGESIFLTWAASKPNGAIVDLYDIWASTD----------FGPWEQMSSC-IHNTADVPHLNSGSQYRFRVRARNDVGWSEFGEESEVVTTNSIAPPGRPEIVAMGGSWVQLKWVQPASVNVVDVFEVYML-----VTGTEEYWDYAPAMAVPAAMVDANAAAEGGDSSHAEGAEGGQYQYQWQAVARVEGTSCTVPDLKSSFRYKFKIRCATAFGWSPFGADSDVIKLPRR 1037 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1459.3304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1459.3304.1 >prot_E-fasciculatus_F_contig1459.3304.1 ID=prot_E-fasciculatus_F_contig1459.3304.1|Name=mRNA_E-fasciculatus_F_contig1459.3304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1362bp MEDSTLRGQSNEPNHRQELVTPRKKSQDAALAAMLEVLREQDEERRLYAAback to top mRNA from alignment at E-fasciculatus_F_contig1459:351..10737+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1459.3304.1 ID=mRNA_E-fasciculatus_F_contig1459.3304.1|Name=mRNA_E-fasciculatus_F_contig1459.3304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=10387bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1459:351..10737+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1459:351..10737+ >mRNA_E-fasciculatus_F_contig1459.3304.1 ID=mRNA_E-fasciculatus_F_contig1459.3304.1|Name=mRNA_E-fasciculatus_F_contig1459.3304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=8172bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1459:351..10737+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |