mRNA_E-fasciculatus_F_contig14576.3297.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14576.3297.1
Unique NamemRNA_E-fasciculatus_F_contig14576.3297.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: D7FRQ9_ECTSI (Dynein light intermediate chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ9_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 1.720e-149
Identity = 306/319 (95.92%), Postives = 308/319 (96.55%), Query Frame = 1 
Query:   37 MAVAKQQKHAPTPASAAAVGATAAAATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPIAGQAFHPVLSYAYLDAADPSEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK 993
            MAVAKQQKHAP PASA+ VGAT AAATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNN   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DPIAGQAFHPVLSYAYLDAADP+EQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXX  GLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK
Sbjct:    1 MAVAKQQKHAPAPASASTVGATTAAATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---DPIAGQAFHPVLSYAYLDAADPAEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXX--GLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK 314
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: A0A7S3XSQ8_HETAK (Dynein light intermediate chain (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSQ8_HETAK)

HSP 1 Score: 133 bits (335), Expect = 8.640e-33
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = 1 
Query:  451 PVLSYAYLDAADPSEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFC 987
            PVL Y+++DA D +    ERD++P R+S WS   + FE LL      E+L +  + + +DLS+PW++M ++EKW   +E+ +  +  QLSVG QD+L     + +  + +                            ++RNLGVP++V+GCK D++++ETFE QQ+L FIQQ LR+FC
Sbjct:   79 PVLFYSFMDAVDLTANEFERDDTPARISTWSLGDVSFENLLSIPFTAEKLKHTMIAITLDLSKPWDLMRNLEKWVKVLERAIVKVRSQLSVGDQDELMQIQNDYIASQTEVENSSK----------------------IQRNLGVPLMVIGCKLDAIEAETFEHQQKLQFIQQHLRKFC 235
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: A0A7M7RH67_STRPU (Dynein light intermediate chain n=6 Tax=Echinacea TaxID=7674 RepID=A0A7M7RH67_STRPU)

HSP 1 Score: 91.7 bits (226), Expect = 7.470e-17
Identity = 66/198 (33.33%), Postives = 93/198 (46.97%), Query Frame = 1 
Query:  457 LSYAYLDAADPSEQGAERDESPPRVSVWSCSGL-EFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLL----------------QLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKAD---SLQSETFEQQQRLHFIQQSLRRFCL 990
            L Y YLD  D      +RD++  R  VW  +G  E E LL   L  + L +M V++AVD+ RPW +MDS++KWT  + +HV SL +                Q     +    S+V  R  G  K  G                    LG+  L  NLGVP+VVV  K+D   +L+ E     + L F+QQ++R+FCL
Sbjct:   84 LEYLYLDVRD-----EDRDDT-TRCGVWILAGENEHEDLLRYALTADNLEHMLVIIAVDMCRPWNIMDSLQKWTQVIRRHVDSLRIPPEKLRELEQRLVQQFQAYTEPETGQDSSVTRRTSGVTKPTGAEDEEAVVLP----------LGETTLTHNLGVPIVVVVTKSDYVNTLEKEQDYSDEHLDFLQQNVRKFCL 265
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: A0A8D9DQ38_9HEMI (Dynein light intermediate chain n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9DQ38_9HEMI)

HSP 1 Score: 85.1 bits (209), Expect = 1.370e-14
Identity = 58/193 (30.05%), Postives = 96/193 (49.74%), Query Frame = 1 
Query:  454 VLSYAYLDAADPSEQGAERDESPPRVSVWSCSGLEFEP----LLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLR-----GKAKEIGGXXXXXXXXXXXXXXXXXG-GLGDGVLERNLGVPMVVVGCKAD---SLQSETFEQQQRLHFIQQSLRRFCLK 993
             L YAY++ +D      E  E   R+ VW   G   EP    LL+  L  + LP+  V+  V ++ PW ++D ++KW +A++ H+ +L    ++GA D      +   R      +  ++ G                 G  LG+G+LERNLGV +VVV  K D   +L+ + + +++   F+QQ +R+FCLK
Sbjct:   79 ALEYAYINVSD------EYREDHTRLGVWILDG---EPAHSNLLQFALNQDTLPHTMVMFVVSMTTPWNIIDELQKWASALQDHIDNL----NIGAHDYQELTQRNIKRWYEYVDQGDDLDGDNSLPNRRISRNYEEEQGLPLGEGILERNLGVDIVVVVTKTDYMSTLEKDLYYKEEHFDFVQQYIRKFCLK 258
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: F0VZ01_9STRA (Dynein light intermediate chain n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZ01_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.430e-14
Identity = 73/295 (24.75%), Postives = 122/295 (41.36%), Query Frame = 1 
Query:  112 ATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPIAGQAFHPVLSYAYLDAADPSEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKE-IGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK 993
            A AN W+ MLRD+  RS++PS   + VG  G GK SLL   +     A+ +N                                                    +P+  Q    +  +A +  +D      E DES   ++ WS + L+   LL+  L+   L      V VDLS PW +  S+EKWT+A+E  +   + Q+    +  L  ++K  L    +  +GG                   L +G+L++NLG+P V++  K+D L+ E+  Q   + +++ S+R F ++
Sbjct:    4 ANANQWQQMLRDSSVRSKIPSVNFIIVGDPGTGKESLLAR-MSASNRANLSNSENWNPTKQNELLSSYSDNQA------------------------------SNPL--QKSDALFKFAAIPISD-KHVAVEADESIAMINAWSLNDLDLHELLQIALQSSTLEFSVAAVTVDLSSPWSMQKSIEKWTSALEGAILQQMSQIDPQKRSSLYQSIKNHLLDYGEPGMGGQPSDTRGPMDSSSRNEF--LEEGILDKNLGIPFVIIVTKSD-LRPESSLQ---VDYLEYSIRMFAIR 258
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: A0A6A4FS02_9STRA (Dynein light intermediate chain n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FS02_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.780e-14
Identity = 51/185 (27.57%), Postives = 96/185 (51.89%), Query Frame = 1 
Query:  439 QAFHPVLSYAYLDAADPSEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK 993
            +A   +L++  LD  DP  +  E ++    +  WS + L  + L++  ++P+ L    V + +DLSRPW +  S+E+W +A+E  +   + QL+  A+++L +A+K+ +   A E                      + +GVL +NLGVP+V+V  KAD       E   ++ +I+ +LR+F ++
Sbjct:   58 RAVDTLLAFKTLDVLDP--RAKESEDVMAHIGTWSLNDLNLKDLIKIAVKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQINQLTPEARNELYTAIKQHIL--AYEDPSVDHSEPTPMDTSTNEF---MEEGVLSKNLGVPLVIVVAKADL----RLENSVKMDYIEYTLRQFAIR 231
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: A0A0D2VPW6_CAPO3 (Dynein light intermediate chain n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VPW6_CAPO3)

HSP 1 Score: 83.6 bits (205), Expect = 3.740e-14
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 1 
Query:  457 LSYAYLDAADPSEQGAERDESPPRVSVWSCSGLEFEP-LLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLR-------GKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKAD---SLQSETFEQQQRLHFIQQSLRRFCLK 993
            L YAY +  D      + ++   ++ VWS  G   +P  L + L       M  V+AVDLS+PW +++S++++T A+E+H+ +L     VG +D L     + +R       GKA   G                    L   VL RNLG+P+VVV CK+D   +L+ +   + +   FIQ  LR+FCL+
Sbjct:   88 LEYAYAEVKD-----EDNEDFSAQIGVWSLDGDLLQPSTLASALNENNFAGMLAVLAVDLSQPWSILESLKQYTRALEEHIETL-----VGIEDQLPELKAKLVRAFQTYSEGKAVADGSEAVLAP-------------LEHDVLSRNLGLPIVVVACKSDLLSTLERDYNYKDEHYDFIQHHLRKFCLR 254
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: A0A421FAE9_9STRA (Dynein light intermediate chain n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FAE9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.640e-14
Identity = 49/183 (26.78%), Postives = 92/183 (50.27%), Query Frame = 1 
Query:  454 VLSYAYLDAADP--SEQGAERDESP-PRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK 993
            +L+Y  +D  DP   E G +  E     +  WS + L  + L++  ++P+ L    V + +D+SRPW +  S+E+W +A+E  +   + QLS  A+++L +A+K+ +                            + +GVL +NLGVP+V+V  KAD     +     ++ +I+ +LR+F ++
Sbjct:   67 LLAYTTVDVLDPRAKESGGDASEDVMAHIGTWSLNDLSLKDLIKIAVKPQNLQKTVVAIVLDMSRPWTIKSSLEQWLSALEGQLLEQINQLSPEARNELYAAIKQHILTYEDPSVDHSAPTPMDTSTNEF-----MEEGVLSKNLGVPLVIVVAKADLRPENSV----KMDYIEYTLRQFAIR 240
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: M4BRF2_HYAAE (Dynein light intermediate chain n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRF2_HYAAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.950e-14
Identity = 56/184 (30.43%), Postives = 96/184 (52.17%), Query Frame = 1 
Query:  454 VLSYAYLDAADP----SEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK 993
            +L++  LD  DP    S +  E D+    V  WS + L  + L++ V++P+ L    V V +DLSRPW +  S+E+W +A+E  +   + QL+  A+++L +A+K+ +   A E                      + +GVL +NLGVP++ V  KAD L+ E   Q   + +I+ +LRR  ++
Sbjct:   64 LLAFQTLDVLDPRAKESGESQESDDVIAHVETWSLNDLSLKDLIKMVVKPQTLYKTVVAVVLDLSRPWTIKSSLEQWLSALEGQLLDQINQLTSEARNELYAAIKQHIL--AYEDPSIDHSVPTPMDTSASEF---MEEGVLSKNLGVPLIFVVAKAD-LRPENSVQ---MDYIEYTLRRVAVR 238
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BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Match: A0A3M6VKG5_9STRA (Dynein light intermediate chain n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKG5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.100e-13
Identity = 48/182 (26.37%), Postives = 91/182 (50.00%), Query Frame = 1 
Query:  454 VLSYAYLDAADPSEQGAE--RDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXXGGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCLK 993
            +L++  LD  DP  + AE  R +    +  WS + L  E L++  ++P+ L    V + +DLSRPW +  S+E+W +A+E  +   + QL    +++L +++K+ +                            L +GVL +N+GVP+V++  KAD     +     ++ +I+ +LR+F L+
Sbjct:   63 ILAFKTLDVLDPHVKRAEMMRQDVMAHICTWSLNDLTLEDLIKIAIKPQTLQTTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQINQLPSEERNELYASLKQHILTYEDPSVDHSAPVPMDTSTNEF-----LAEGVLSKNIGVPLVIIVAKADLRPENSV----KMDYIEYTLRQFALR 235
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14576.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ9_ECTSI1.720e-14995.92Dynein light intermediate chain n=2 Tax=Ectocarpus... [more]
A0A7S3XSQ8_HETAK8.640e-3336.31Dynein light intermediate chain (Fragment) n=1 Tax... [more]
A0A7M7RH67_STRPU7.470e-1733.33Dynein light intermediate chain n=6 Tax=Echinacea ... [more]
A0A8D9DQ38_9HEMI1.370e-1430.05Dynein light intermediate chain n=2 Tax=Cacopsylla... [more]
F0VZ01_9STRA1.430e-1424.75Dynein light intermediate chain n=1 Tax=Albugo lai... [more]
A0A6A4FS02_9STRA1.780e-1427.57Dynein light intermediate chain n=1 Tax=Phytophtho... [more]
A0A0D2VPW6_CAPO33.740e-1431.05Dynein light intermediate chain n=1 Tax=Capsaspora... [more]
A0A421FAE9_9STRA4.640e-1426.78Dynein light intermediate chain n=5 Tax=Phytophtho... [more]
M4BRF2_HYAAE5.950e-1430.43Dynein light intermediate chain n=1 Tax=Hyaloperon... [more]
A0A3M6VKG5_9STRA1.100e-1326.37Dynein light intermediate chain n=2 Tax=Peronospor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14576contigE-fasciculatus_F_contig14576:1730..3149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.8
Seed ortholog evalue2.8e-121
Seed eggNOG ortholog2880.D7FRQ9
Preferred nameDYNC1LI1
KEGG koko:K03685,ko:K10416
KEGG Pathwayko03008,ko04145,ko04962,ko05132,ko05205,map03008,map04145,map04962,map05132,map05205
GOsGO:0000003,GO:0000166,GO:0000226,GO:0000278,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0000922,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0003006,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0005886,GO:0006403,GO:0006810,GO:0006887,GO:0006888,GO:0006928,GO:0006955,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007088,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0007409,GO:0008088,GO:0008090,GO:0008150,GO:0009653,GO:0009719,GO:0009987,GO:0010033,GO:0010564,GO:0010769,GO:0010965,GO:0010970,GO:0010975,GO:0012505,GO:0012506,GO:0015630,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0016358,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030030,GO:0030071,GO:0030141,GO:0030154,GO:0030182,GO:0030286,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031175,GO:0031344,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032886,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0035371,GO:0036094,GO:0036230,GO:0042119,GO:0042221,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045321,GO:0045504,GO:0045595,GO:0045664,GO:0045787,GO:0045931,GO:0046605,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048814,GO:0048856,GO:0048858,GO:0048869,GO:0050657,GO:0050658,GO:0050767,GO:0050773,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051259,GO:0051260,GO:0051493,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051960,GO:0051983,GO:0060284,GO:0061564,GO:0061842,GO:0065003,GO:0065007,GO:0070507,GO:0070820,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098687,GO:0098805,GO:0098930,GO:0099080,GO:0099081,GO:0099111,GO:0099503,GO:0099512,GO:0099513,GO:0101002,GO:0101003,GO:0120025,GO:0120035,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902494,GO:1902850,GO:1903047,GO:1903504,GO:1905818,GO:1990089,GO:1990090,GO:1990752,GO:2000026
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG3905@1,KOG3905@2759
EC3.1.26.3
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03019,ko03036,ko04131,ko04812
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionD1LIC, cytoplasmic dynein 1 light intermediate chain
Ec32 orthologEc-00_003490.1
Exons2
Model size995
Cds size993
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927944.0086167-CDS-E-fasciculatus_F_contig14576:1729..23981622927944.0086167-CDS-E-fasciculatus_F_contig14576:1729..2398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14576 1730..2398 +
1695995760.395909-CDS-E-fasciculatus_F_contig14576:1729..23981695995760.395909-CDS-E-fasciculatus_F_contig14576:1729..2398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14576 1730..2398 +
1622927944.0180826-CDS-E-fasciculatus_F_contig14576:2824..31481622927944.0180826-CDS-E-fasciculatus_F_contig14576:2824..3148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14576 2825..3148 +
1695995760.4063103-CDS-E-fasciculatus_F_contig14576:2824..31481695995760.4063103-CDS-E-fasciculatus_F_contig14576:2824..3148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14576 2825..3148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14576.3297.1prot_E-fasciculatus_F_contig14576.3297.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14576 1730..3148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14576.3297.1

>prot_E-fasciculatus_F_contig14576.3297.1 ID=prot_E-fasciculatus_F_contig14576.3297.1|Name=mRNA_E-fasciculatus_F_contig14576.3297.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=331bp
TLHCCLRVLRLTMAVAKQQKHAPTPASAAAVGATAAAATANLWETMLRDA
MRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGSGAAAASA
VVAPTPEKKGPEGGAGGGGGSGGGGAAASAGASASGGGGSGDPIAGQAFH
PVLSYAYLDAADPSEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEEL
PNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSA
VKERLRGKAKEIGGGGGKMMGGNSTGNDPPGGGLGDGVLERNLGVPMVVV
GCKADSLQSETFEQQQRLHFIQQSLRRFCLK
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mRNA from alignment at E-fasciculatus_F_contig14576:1730..3149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14576.3297.1 ID=mRNA_E-fasciculatus_F_contig14576.3297.1|Name=mRNA_E-fasciculatus_F_contig14576.3297.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14576:1730..3149+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACATTACACTGCTGCCTGCGTGTGTTGCGTTTAACCATGGCCGTTGCAAA
GCAACAGAAGCACGCGCCAACGCCAGCGTCAGCAGCAGCCGTGGGCGCTA
CTGCCGCCGCGGCTACGGCCAACCTCTGGGAAACCATGCTGCGAGACGCG
ATGCGGAGAAGCCGGCTCCCTTCCAGCACGCTCGTCTTCGTCGGCCCCAA
GGGCTGCGGCAAGTCGTCTCTCCTCGACACCTTCCTCGAGGGGCAGGGAT
CCGCCTCTACTAACAACCCTTCCGGCAGCGGTGCAGCGGCTGCCTCGGCC
GTCGTCGCACCGACCCCCGAGAAGAAGGGTCCCGAGGGCGGGGCAGGCGG
CGGCGGCGGCAGTGGCGGCGGGGGTGCGGCGGCATCTGCAGGAGCTTCGG
CGAGCGGAGGCGGCGGCAGCGGCGATCCCATCGCGGGGCAGGCCTTCCAC
CCCGTCCTGTCGTACGCGTACCTGGACGCGGCGGACCCCTCGGAGCAGGG
AGCGGAGCGGGATGAGTCGCCCCCCCGCGTGAGTGTTTGGTCCTGCAGCG
GACTGGAGTTCGAGCCCTTGCTGGAGACTGTGCTGCGACCGGAGGAGCTC
CCGAACATGGCCGTGGTAGTTGCCGTTGACCTGTCTCGGCCCTGGGAGGT
CATGGATTCTGTGGAAAAGGTTTGTGTTTCAGCTGCTACGTTGCGGGAGT
GACTACTTGCTGTTCGTGGTGTGTGTTTGCGACCCTAGGACGAGAGAGCT
GTCAGATGTTGAAATGCAATTTCCATTTGTTCGTTTTGAATTTTTTCCTC
CTCGATCTTGAATTCTTCCGACAGCATGTTTCTTGTGTCGGCCAGTATTA
CAAGCTTGTAATACGAGGGTAGCATACCTGTTGGGTAGTGCTCTTGCATA
GCAACCCTTAGTCTACAACGTAAACTCACGGAGGCCGTGGACTTTCGCGT
GTGGTAACGCCTCGGGCGTTTGTCCACTACACCATCGAGGCGCGACAAAC
CGCTTCAATCTTTGTCTTAGTCTTCGCAACAACGCGCCTGCCAACACCCC
CCCCACATTACCGGGCCTCACCCGTGCAACTTTACCACTTTCCAGTGGAC
GACGGCGATGGAAAAGCACGTGACCTCGCTGCTCCTGCAGCTCTCCGTCG
GAGCCCAGGACGACTTGCGCAGCGCCGTCAAGGAGAGACTAAGAGGGAAA
GCGAAGGAGATCGGCGGCGGGGGCGGCAAGATGATGGGAGGCAACAGCAC
CGGCAACGACCCTCCTGGCGGGGGCCTGGGCGACGGAGTTCTGGAGAGAA
ATCTTGGCGTGCCGATGGTGGTGGTCGGGTGCAAGGCGGACTCTTTGCAG
AGCGAGACGTTCGAGCAGCAGCAGCGATTGCACTTTATCCAGCAGAGCCT
CCGCAGATTCTGCCTGAAAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14576:1730..3149+

>mRNA_E-fasciculatus_F_contig14576.3297.1 ID=mRNA_E-fasciculatus_F_contig14576.3297.1|Name=mRNA_E-fasciculatus_F_contig14576.3297.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1986bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14576:1730..3149+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACATTACACTGCTGCCTGCGTGTGTTGCGTTTAACCATGGCCGTTGCAAA
GCAACAGAAGCACGCGCCAACGCCAGCGTCAGCAGCAGCCGTGGGCGCTA
CTGCCGCCGCGGCTACGGCCAACCTCTGGGAAACCATGCTGCGAGACGCG
ATGCGGAGAAGCCGGCTCCCTTCCAGCACGCTCGTCTTCGTCGGCCCCAA
GGGCTGCGGCAAGTCGTCTCTCCTCGACACCTTCCTCGAGGGGCAGGGAT
CCGCCTCTACTAACAACCCTTCCGGCAGCGGTGCAGCGGCTGCCTCGGCC
GTCGTCGCACCGACCCCCGAGAAGAAGGGTCCCGAGGGCGGGGCAGGCGG
CGGCGGCGGCAGTGGCGGCGGGGGTGCGGCGGCATCTGCAGGAGCTTCGG
CGAGCGGAGGCGGCGGCAGCGGCGATCCCATCGCGGGGCAGGCCTTCCAC
CCCGTCCTGTCGTACGCGTACCTGGACGCGGCGGACCCCTCGGAGCAGGG
AGCGGAGCGGGATGAGTCGCCCCCCCGCGTGAGTGTTTGGTCCTGCAGCG
GACTGGAGTTCGAGCCCTTGCTGGAGACTGTGCTGCGACCGGAGGAGCTC
CCGAACATGGCCGTGGTAGTTGCCGTTGACCTGTCTCGGCCCTGGGAGGT
CATGGATTCTGTGGAAAAGACATTACACTGCTGCCTGCGTGTGTTGCGTT
TAACCATGGCCGTTGCAAAGCAACAGAAGCACGCGCCAACGCCAGCGTCA
GCAGCAGCCGTGGGCGCTACTGCCGCCGCGGCTACGGCCAACCTCTGGGA
AACCATGCTGCGAGACGCGATGCGGAGAAGCCGGCTCCCTTCCAGCACGC
TCGTCTTCGTCGGCCCCAAGGGCTGCGGCAAGTCGTCTCTCCTCGACACC
TTCCTCGAGGGGCAGGGATCCGCCTCTACTAACAACCCTTCCGGCAGCGG
TGCAGCGGCTGCCTCGGCCGTCGTCGCACCGACCCCCGAGAAGAAGGGTC
CCGAGGGCGGGGCAGGCGGCGGCGGCGGCAGTGGCGGCGGGGGTGCGGCG
GCATCTGCAGGAGCTTCGGCGAGCGGAGGCGGCGGCAGCGGCGATCCCAT
CGCGGGGCAGGCCTTCCACCCCGTCCTGTCGTACGCGTACCTGGACGCGG
CGGACCCCTCGGAGCAGGGAGCGGAGCGGGATGAGTCGCCCCCCCGCGTG
AGTGTTTGGTCCTGCAGCGGACTGGAGTTCGAGCCCTTGCTGGAGACTGT
GCTGCGACCGGAGGAGCTCCCGAACATGGCCGTGGTAGTTGCCGTTGACC
TGTCTCGGCCCTGGGAGGTCATGGATTCTGTGGAAAAGTGGACGACGGCG
ATGGAAAAGCACGTGACCTCGCTGCTCCTGCAGCTCTCCGTCGGAGCCCA
GGACGACTTGCGCAGCGCCGTCAAGGAGAGACTAAGAGGGAAAGCGAAGG
AGATCGGCGGCGGGGGCGGCAAGATGATGGGAGGCAACAGCACCGGCAAC
GACCCTCCTGGCGGGGGCCTGGGCGACGGAGTTCTGGAGAGAAATCTTGG
CGTGCCGATGGTGGTGGTCGGGTGCAAGGCGGACTCTTTGCAGAGCGAGA
CGTTCGAGCAGCAGCAGCGATTGCACTTTATCCAGCAGAGCCTCCGCAGA
TTCTGCCTGAAATGGACGACGGCGATGGAAAAGCACGTGACCTCGCTGCT
CCTGCAGCTCTCCGTCGGAGCCCAGGACGACTTGCGCAGCGCCGTCAAGG
AGAGACTAAGAGGGAAAGCGAAGGAGATCGGCGGCGGGGGCGGCAAGATG
ATGGGAGGCAACAGCACCGGCAACGACCCTCCTGGCGGGGGCCTGGGCGA
CGGAGTTCTGGAGAGAAATCTTGGCGTGCCGATGGTGGTGGTCGGGTGCA
AGGCGGACTCTTTGCAGAGCGAGACGTTCGAGCAGCAGCAGCGATTGCAC
TTTATCCAGCAGAGCCTCCGCAGATTCTGCCTGAAA
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