prot_E-fasciculatus_F_contig1444.3225.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1444.3225.1
Unique Nameprot_E-fasciculatus_F_contig1444.3225.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length259
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1444.3225.1 vs. uniprot
Match: D8LDM5_ECTSI (UCH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM5_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 1.130e-133
Identity = 195/244 (79.92%), Postives = 208/244 (85.25%), Query Frame = 0 
Query:   10 LRHHHGRVLSNPAGDSQPPPDGEPCPGAPSVPRIIPNHRGMTNRANDCFLLSAIQMMRALPMCHAALLNFPDAARPTPPPGKELTWAVSRTMRALQQSGGTAGPLNPTELIGTFFTVFNETMA-NGEEDDLANTIGTILDKIHSETVDEGSQSSLVDSARGQMETWTICQMCQVEKRKSSPRTSFSKNEVMLSVENWSVIPPELIVSVGRFQRTWSGGYTKVKDRIAVDMRLDKRAIFGGDQTF 252
            LRHHHGRVLSNP GD QPPPDG+ CPGAPSVPRIIPNHRGM NR NDCFLLSAIQM+RALP+CHAA+LNFPDA    PP GKELTWAVSRTMRALQ+SGGTA PLNPTELIGTFF VF+  M  +GE+DDLANTIGTILDK+HSETVD  SQSSLVDSARGQMET T CQMC  EK K +PRTSFSKNEVMLS E WSVIPPELIVSVGRFQRT  GGY K KD++AVD+ LDK   FG D TF
Sbjct:    3 LRHHHGRVLSNPPGDPQPPPDGKSCPGAPSVPRIIPNHRGMINRENDCFLLSAIQMIRALPICHAAILNFPDATELAPPRGKELTWAVSRTMRALQESGGTASPLNPTELIGTFFNVFSGNMVQDGEQDDLANTIGTILDKVHSETVDAESQSSLVDSARGQMETRTFCQMCHAEKNKRTPRTSFSKNEVMLSKEKWSVIPPELIVSVGRFQRTLCGGYIKAKDKVAVDLLLDKTVSFG-DTTF 245
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1444.3225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDM5_ECTSI1.130e-13379.92UCH domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 49..243
e-value: 8.0E-8
score: 32.1
NoneNo IPR availableGENE3D3.90.70.10coord: 42..206
e-value: 1.5E-14
score: 55.7
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 48..258
score: 10.849
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 44..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1444contigE-fasciculatus_F_contig1444:3116..8370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1444.3225.1mRNA_E-fasciculatus_F_contig1444.3225.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1444 3116..8370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1444.3225.1 ID=prot_E-fasciculatus_F_contig1444.3225.1|Name=mRNA_E-fasciculatus_F_contig1444.3225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
MLTVVVHTPLRHHHGRVLSNPAGDSQPPPDGEPCPGAPSVPRIIPNHRGM
TNRANDCFLLSAIQMMRALPMCHAALLNFPDAARPTPPPGKELTWAVSRT
MRALQQSGGTAGPLNPTELIGTFFTVFNETMANGEEDDLANTIGTILDKI
HSETVDEGSQSSLVDSARGQMETWTICQMCQVEKRKSSPRTSFSKNEVML
SVENWSVIPPELIVSVGRFQRTWSGGYTKVKDRIAVDMRLDKRAIFGGDQ
TFVVTVTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain-like_cys_pep_sf
IPR028889USP_dom
IPR001394Peptidase_C19_UCH