mRNA_E-fasciculatus_F_contig14378.3184.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14378.3184.1
Unique NamemRNA_E-fasciculatus_F_contig14378.3184.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14378.3184.1 vs. uniprot
Match: A0A7S1FUS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUS0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.580e-8
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:    1 TCGSAAARGHLDILKWARNHGCEWDETT 84
            TC +AA +GHLD+LKWAR HGC+WDE T
Sbjct:    2 TCSNAAEKGHLDVLKWARAHGCDWDEWT 29
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BLAST of mRNA_E-fasciculatus_F_contig14378.3184.1 vs. uniprot
Match: A0A7S0T4I3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4I3_9CHLO)

HSP 1 Score: 47.4 bits (111), Expect = 4.350e-5
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 1 
Query:    1 TCGSAAARGHLDILKWARNHGCEWDETT 84
            TC  AA  GHL++LKWAR H C WDE T
Sbjct:    1 TCECAAEGGHLEVLKWAREHDCPWDELT 28
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14378.3184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1FUS0_9STRA6.580e-871.43Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S0T4I3_9CHLO4.350e-564.29Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14378contigE-fasciculatus_F_contig14378:45..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927926.5649157-CDS-E-fasciculatus_F_contig14378:44..1701622927926.5649157-CDS-E-fasciculatus_F_contig14378:44..170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14378 45..170 +
1695995753.7726634-CDS-E-fasciculatus_F_contig14378:44..1701695995753.7726634-CDS-E-fasciculatus_F_contig14378:44..170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14378 45..170 +
1622927926.5824351-CDS-E-fasciculatus_F_contig14378:600..6751622927926.5824351-CDS-E-fasciculatus_F_contig14378:600..675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14378 601..675 +
1695995753.7830465-CDS-E-fasciculatus_F_contig14378:600..6751695995753.7830465-CDS-E-fasciculatus_F_contig14378:600..675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14378 601..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14378.3184.1prot_E-fasciculatus_F_contig14378.3184.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14378 45..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14378.3184.1

>prot_E-fasciculatus_F_contig14378.3184.1 ID=prot_E-fasciculatus_F_contig14378.3184.1|Name=mRNA_E-fasciculatus_F_contig14378.3184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
TCGSAAARGHLDILKWARNHGCEWDETTCNNAAINGHLKVLQWLRSNGCP
WDSYTCSSAAGMGHLDV
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mRNA from alignment at E-fasciculatus_F_contig14378:45..675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14378.3184.1 ID=mRNA_E-fasciculatus_F_contig14378.3184.1|Name=mRNA_E-fasciculatus_F_contig14378.3184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=631bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14378:45..675+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGTGTGGGAGTGCTGCCGCCCGCGGCCACCTCGATATCCTTAAGTGGGC
CAGGAACCACGGGTGCGAGTGGGACGAGACCACCTGCAACAACGCCGCCA
TTAATGGCCACCTCAAAGTCCTGCAGGTGTGTGCGTGTGTGTAGTGTCAT
GTCTAGTGTAGTATTCTAGAGCACGGTATACCACTAAGTACGGTGTAACA
GATAACCGTCTACAGAGCGATTGTGGTAATATAGACTACAGTACCGTTCT
ACGTAAGCTGCATGTTATGCAACAACGCCATGACCCGATTTTCAAAGCTC
GATTGCTTGCATACCTTTTGAGTACTTTCTGCCTTTGTACGGGCGTCTTA
AATATTTATGAGTGGTGTGCATAGTGGCAGTGTGCTTGTGTGTGCCAATA
AAATTATCTTCGTGACAGATGTTGCGTGCTTTCTGTACTAAGTTCATCAC
TTTGCAGATGCTAAAGTTCAGCAACTCCCGACCCCTCGTGTGTGTGCTGT
GTCTTGGCCGCAAAAATGATCATGAATCGTCGATCGATCGGCGTATCTGC
TTCCAGTGGCTCCGCTCGAACGGGTGCCCTTGGGACAGCTACACCTGCAG
CAGCGCCGCCGGCATGGGTCATCTCGATGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14378:45..675+

>mRNA_E-fasciculatus_F_contig14378.3184.1 ID=mRNA_E-fasciculatus_F_contig14378.3184.1|Name=mRNA_E-fasciculatus_F_contig14378.3184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14378:45..675+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGTGTGGGAGTGCTGCCGCCCGCGGCCACCTCGATATCCTTAAGTGGGC
CAGGAACCACGGGTGCGAGTGGGACGAGACCACCTGCAACAACGCCGCCA
TTAATGGCCACCTCAAAGTCCTGCAGACGTGTGGGAGTGCTGCCGCCCGC
GGCCACCTCGATATCCTTAAGTGGGCCAGGAACCACGGGTGCGAGTGGGA
CGAGACCACCTGCAACAACGCCGCCATTAATGGCCACCTCAAAGTCCTGC
AGTGGCTCCGCTCGAACGGGTGCCCTTGGGACAGCTACACCTGCAGCAGC
GCCGCCGGCATGGGTCATCTCGATGTGTGGCTCCGCTCGAACGGGTGCCC
TTGGGACAGCTACACCTGCAGCAGCGCCGCCGGCATGGGTCATCTCGATG
TG
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