mRNA_E-fasciculatus_F_contig14375.3181.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14375.3181.1
Unique NamemRNA_E-fasciculatus_F_contig14375.3181.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14375.3181.1 vs. uniprot
Match: D7G8V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V3_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.290e-69
Identity = 133/163 (81.60%), Postives = 138/163 (84.66%), Query Frame = 2 
Query:  497 PPTSRLLDESGEDVRPFIERNPFQPRASSCLCPEEGGQHAGVAFPPPARLSFLQAVELVLTTGPLSRE-RRDDGRGGAPVAQVADASGEASPSADRVAPPTAGR---GSPTFEGFGDNVEASVVASVLELLRRATAAAERWGLSPRDRERLALWSEAAAATAS 973
            P  SRLLDESGEDVRPFIERNPFQPRASS LC EE  Q   +   PPARLSFLQAVELVLTTGPLSRE R DDGRGG+PV QVADAS EASPS + VAPPTAGR   G  TFEGFG NVEASVVASVLELLRRATAAAERWGLSP++RERLALWS AAAATAS
Sbjct:  236 PGDSRLLDESGEDVRPFIERNPFQPRASSWLCTEEEEQQDEIVASPPARLSFLQAVELVLTTGPLSREWRDDDGRGGSPVVQVADASEEASPSGEGVAPPTAGRCEGGRSTFEGFGKNVEASVVASVLELLRRATAAAERWGLSPQERERLALWSSAAAATAS 398
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BLAST of mRNA_E-fasciculatus_F_contig14375.3181.1 vs. uniprot
Match: A0A6H5KMN8_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.450e-22
Identity = 64/85 (75.29%), Postives = 65/85 (76.47%), Query Frame = 2 
Query:  509 RLLDESGEDVRPFIERNPFQPRASSCLCPE--EGGQHAGVAFPPPARLSFLQAVELVLTTGPLSRE-RRDDGRGGAPVAQVADAS 754
            RLLDESGEDVRPFIERNPFQPR SS LC E  E  Q   VA PP   LSFLQAVELVLTTGPL RE R DDGRGG+PV   ADAS
Sbjct:  363 RLLDESGEDVRPFIERNPFQPRPSSWLCTEKEEEQQDESVASPP-TTLSFLQAVELVLTTGPLFREWRDDDGRGGSPVVHEADAS 446
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14375.3181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8V3_ECTSI1.290e-6981.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMN8_9PHAE7.450e-2275.29FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14375contigE-fasciculatus_F_contig14375:253..1651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.4
Seed ortholog evalue2.9e-60
Seed eggNOG ortholog2880.D7G8V3
EggNOG OGs2C3YT@1,2SFYY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1399
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14375.3181.1prot_E-fasciculatus_F_contig14375.3181.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14375 623..1228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927926.295754-UTR-E-fasciculatus_F_contig14375:252..6221622927926.295754-UTR-E-fasciculatus_F_contig14375:252..622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14375 253..622 +
1695995753.67785-UTR-E-fasciculatus_F_contig14375:252..6221695995753.67785-UTR-E-fasciculatus_F_contig14375:252..622Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14375 253..622 +
1622927926.3241324-UTR-E-fasciculatus_F_contig14375:1228..16511622927926.3241324-UTR-E-fasciculatus_F_contig14375:1228..1651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14375 1229..1651 +
1695995753.7022638-UTR-E-fasciculatus_F_contig14375:1228..16511695995753.7022638-UTR-E-fasciculatus_F_contig14375:1228..1651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14375 1229..1651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927926.311124-CDS-E-fasciculatus_F_contig14375:622..12281622927926.311124-CDS-E-fasciculatus_F_contig14375:622..1228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14375 623..1228 +
1695995753.691826-CDS-E-fasciculatus_F_contig14375:622..12281695995753.691826-CDS-E-fasciculatus_F_contig14375:622..1228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14375 623..1228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14375.3181.1

>prot_E-fasciculatus_F_contig14375.3181.1 ID=prot_E-fasciculatus_F_contig14375.3181.1|Name=mRNA_E-fasciculatus_F_contig14375.3181.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp
MYVHVSNVQPTENSQRPTTRSCSCPRPGARPFPPILLCTRASPPTSRLLD
ESGEDVRPFIERNPFQPRASSCLCPEEGGQHAGVAFPPPARLSFLQAVEL
VLTTGPLSRERRDDGRGGAPVAQVADASGEASPSADRVAPPTAGRGSPTF
EGFGDNVEASVVASVLELLRRATAAAERWGLSPRDRERLALWSEAAAATA
S*
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mRNA from alignment at E-fasciculatus_F_contig14375:253..1651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14375.3181.1 ID=mRNA_E-fasciculatus_F_contig14375.3181.1|Name=mRNA_E-fasciculatus_F_contig14375.3181.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1399bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14375:253..1651+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAAACGGGAGACGTCGAGTCGGAGAGGAAGGAGGCTGCTACGCGTGCT
CAGCGGGAGGTTTTGCCCCGTTTGCTGGAGTACTTGAGGCGAGTTTTTGA
GTTGATGGCCGTCGTTTTTTCGACGCGGGTCAGGGTGTTGTTTGGAGAAA
TCGTGTCGCTGTAGCAAAATTGTATGGAGGGGTGCAAACATACGAAAGGG
GCGCGTTGTCCTATACACATGGCCTTGTTCCATGAGACTTCAGAGTTCCT
TGGTTCGGGCTTAATTGTGATGTTCGGCACTGCTTTTTTACACCGCATCT
GTGTTGCTTTCACGATGCAACGTTCCACGTACTGCAAGTGAAAAATGTGT
TCTGGCGGTTGACGAACGGCATGTATGTTCATGTGTCGAACGTCCAACCG
ACCGAAAACTCCCAACGGCCAACAACGCGTTCCTGCTCTTGCCCCCGCCC
GGGTGCCCGGCCTTTCCCACCCATCCTTTTGTGCACACGCGCGTCGCCCC
CAACCAGTCGTCTCCTGGACGAGAGCGGTGAGGACGTGCGGCCCTTCATC
GAGCGAAACCCTTTCCAGCCGCGAGCCTCCTCCTGCTTGTGCCCCGAGGA
GGGAGGACAACACGCAGGTGTCGCTTTCCCTCCTCCCGCGAGGCTGTCTT
TCTTGCAAGCGGTAGAGCTAGTGCTTACCACCGGCCCGCTGTCCCGGGAG
CGGCGGGACGATGGGCGTGGCGGCGCCCCGGTGGCACAGGTGGCAGATGC
ATCTGGGGAGGCGTCCCCATCAGCAGACAGAGTTGCACCACCAACAGCAG
GCAGAGGCAGCCCGACCTTCGAGGGGTTTGGTGATAATGTGGAGGCGTCG
GTGGTGGCGTCGGTGCTAGAGCTGCTGCGAAGGGCTACTGCGGCGGCGGA
AAGGTGGGGGCTTTCGCCGCGGGACCGGGAGAGGCTGGCGTTGTGGTCGG
AAGCGGCGGCGGCAACGGCTTCCTAGGTTCCGGGGTACCGCCTTTTGCTG
AATGATCGCCGGCCTGTCGCGTTTTTTTGTTTGAGTGTTGTTTTCGTCAG
AAACAAGGTGCACGTAGATACGACGCCGATAGCGGTTGGAGTTTGAACAG
CAGTGCGCGAGGGACAAGCCGAGACGACGGTTTGACCATCGAGCTATCTA
AGACAAGTAACTTTTTCCTGACGTTGTTCACAGCTTGCTCTGGCGGGCTA
ATTTCGCGGCGTTGGGAGCCGCGAGACGTGTCGCGATAAGAAAAACAGCA
GCCGCGGACCCGCGGTTTCAGTCGTCAACAGAACAACCACGCCGAAATGC
TGAGGACGGACGGCTGTCGCTATTCCTTCTTCAGGGAGCAAAGTGACGTA
CAGAACCAAGTTCTCACCTTTCGTCTTCCAATGCATTTAGCAACCTCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14375:253..1651+

>mRNA_E-fasciculatus_F_contig14375.3181.1 ID=mRNA_E-fasciculatus_F_contig14375.3181.1|Name=mRNA_E-fasciculatus_F_contig14375.3181.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14375:253..1651+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATGTTCATGTGTCGAACGTCCAACCGACCGAAAACTCCCAACGGCC
AACAACGCGTTCCTGCTCTTGCCCCCGCCCGGGTGCCCGGCCTTTCCCAC
CCATCCTTTTGTGCACACGCGCGTCGCCCCCAACCAGTCGTCTCCTGGAC
GAGAGCGGTGAGGACGTGCGGCCCTTCATCGAGCGAAACCCTTTCCAGCC
GCGAGCCTCCTCCTGCTTGTGCCCCGAGGAGGGAGGACAACACGCAGGTG
TCGCTTTCCCTCCTCCCGCGAGGCTGTCTTTCTTGCAAGCGGTAGAGCTA
GTGCTTACCACCGGCCCGCTGTCCCGGGAGCGGCGGGACGATGGGCGTGG
CGGCGCCCCGGTGGCACAGGTGGCAGATGCATCTGGGGAGGCGTCCCCAT
CAGCAGACAGAGTTGCACCACCAACAGCAGGCAGAGGCAGCCCGACCTTC
GAGGGGTTTGGTGATAATGTGGAGGCGTCGGTGGTGGCGTCGGTGCTAGA
GCTGCTGCGAAGGGCTACTGCGGCGGCGGAAAGGTGGGGGCTTTCGCCGC
GGGACCGGGAGAGGCTGGCGTTGTGGTCGGAAGCGGCGGCGGCAACGGCT
TCCTAGATGTATGTTCATGTGTCGAACGTCCAACCGACCGAAAACTCCCA
ACGGCCAACAACGCGTTCCTGCTCTTGCCCCCGCCCGGGTGCCCGGCCTT
TCCCACCCATCCTTTTGTGCACACGCGCGTCGCCCCCAACCAGTCGTCTC
CTGGACGAGAGCGGTGAGGACGTGCGGCCCTTCATCGAGCGAAACCCTTT
CCAGCCGCGAGCCTCCTCCTGCTTGTGCCCCGAGGAGGGAGGACAACACG
CAGGTGTCGCTTTCCCTCCTCCCGCGAGGCTGTCTTTCTTGCAAGCGGTA
GAGCTAGTGCTTACCACCGGCCCGCTGTCCCGGGAGCGGCGGGACGATGG
GCGTGGCGGCGCCCCGGTGGCACAGGTGGCAGATGCATCTGGGGAGGCGT
CCCCATCAGCAGACAGAGTTGCACCACCAACAGCAGGCAGAGGCAGCCCG
ACCTTCGAGGGGTTTGGTGATAATGTGGAGGCGTCGGTGGTGGCGTCGGT
GCTAGAGCTGCTGCGAAGGGCTACTGCGGCGGCGGAAAGGTGGGGGCTTT
CGCCGCGGGACCGGGAGAGGCTGGCGTTGTGGTCGGAAGCGGCGGCGGCA
ACGGCTTCCTAG
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