mRNA_E-fasciculatus_F_contig1437.3177.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1437.3177.1
Unique NamemRNA_E-fasciculatus_F_contig1437.3177.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1437.3177.1 vs. uniprot
Match: D8LAT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT6_ECTSI)

HSP 1 Score: 672 bits (1733), Expect = 7.930e-241
Identity = 349/405 (86.17%), Postives = 368/405 (90.86%), Query Frame = 1 
Query:    1 MEDASAVLSPSK----STDGRQDFTSDTANGKRARIGTIHRPWYEKISCCCGIDRSDNSGRSRRGLMISGACLTAGIVLELIATLWAFRQAVQAGGLDGQANCDEDGFLFMQHLSVVTQEMCSQQVDSDLFLSETGLGGDYDPCESTNSGDSSSFLEVCSCSTDIVFDASACAWVALQNSSGVVSNDAGCLARAVEPEFPYSFVPTFGLSECWPANPTGTAELTVTALVVALGSQLMEAVVGFRYLKDPSRGTLLLAAASAAAACGVVAVASVLLSLPSFYAYREGYPTEVATFWLVWAAAGGAAVGALAEFLGTEFFVAEGRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEGERVTTWELLRDGVVGLVTVEIAALLAMWAARFLWTRAKLLLAAKGRRGADD 1203
            ME+AS  LSPSK    STDGRQD TSDTANGK   +G        +IS C GIDRSD SGRSRRGL+ISGACL AGIVLELIATLWAFRQAV+AGGLDGQANCDEDG LFMQ LSVVTQE+CSQ++DSD+FLSETGLGGDYDPCESTNSGD+SSFLEVCSCSTDIVFDA AC+WVALQNSSGVVSN AGCLARAVE EFPYSF+PT G SECWPANPTGTAELTVTALVVALGSQL+E VVGFRYLKDPSRGTLLLAAASAAAACGVV VASVLLSLP FYAYR+GYPTEVATFWLVWAAAGGAAVGALAE L TE+F+ +GRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEGERVTTWELLRDGV+GLVTVE+A LLAMWAARFLWTRAKLLLAAKGR GADD
Sbjct:   62 MEEASVALSPSKKSNKSTDGRQDNTSDTANGKGHVLG--------RISGCRGIDRSDISGRSRRGLIISGACLAAGIVLELIATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQRIDSDMFLSETGLGGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSSGVVSNYAGCLARAVEVEFPYSFIPTIGRSECWPANPTGTAELTVTALVVALGSQLIELVVGFRYLKDPSRGTLLLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAELLATEYFLTKGRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEGERVTTWELLRDGVIGLVTVELAGLLAMWAARFLWTRAKLLLAAKGRTGADD 458
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1437.3177.1 vs. uniprot
Match: A0A6H5KJM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.300e-23
Identity = 109/371 (29.38%), Postives = 165/371 (44.47%), Query Frame = 1 
Query:  178 RGLMISGACLTAGIVLELIATLWAFRQAVQAGGLDGQANCDEDGFLFMQHLSVVTQEMCSQQVDSDLFLSETGLGGDYDPCESTNSGDSSSFLEVCSCST-DIVFDASACAWVALQNSSGVVSNDAGCLARAV-------EPEFPYSFVPTFGLSE------CWPANPTGTAELTVTALVVALGSQLMEAVVGFRYLKDPSRGTLLLAAASAAAACGVVAVASVLLSLPSFYAYREG------------YPTEVATFWLVWAAAGGAAVGALAEFLGTEFFVAEGRLPYLGAFGNGLVWLGSAAMEVIVASFLVW---------EGERVTTWELLRDGVVGLVTVEIAALLAMWAARFLWTRA-KLLLAAK 1182
            RG+  + A L+ G+ LE+ AT W   QA+ +G  D +A+C     L + H   +    C Q   S ++  E      +  C      +     ++C C+  D V  ++ C W +  ++   +  +  C+A  V       + E+  ++      SE      C P +P G  ++T+  LVV+L  +L+EA VG++  ++P     L+  AS     G+ ++  +L  LP      E             Y   V TF            G LAE +   +F A GR  YLG  GN L WL SA  EV+V ++LVW         E     TW +L   V+GLV +E+AALL +W AR L  RA   LL AK
Sbjct:   39 RGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFD-EADCGVRA-LSLYHNDRLPSN-CEQLDSSVVWFDEDRTVSTFTSCSGL---EDPPIDQLCDCARYDRV--STGCTWTSASSTRDEI--EGLCVAVPVIALTSDLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWRNPLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFG-----------GTLAEIV--FYFSAPGRFRYLGVLGNSLTWLASALTEVVVTAYLVWRLQWWENADETADEETWPVLVAAVIGLVVLEVAALLVLWIARVLIARATSALLTAK 386
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1437.3177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAT6_ECTSI7.930e-24186.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJM5_9PHAE9.300e-2329.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1437contigE-fasciculatus_F_contig1437:13461..14672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006430.1
Exons1
Model size1212
Cds size1212
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927925.9328568-CDS-E-fasciculatus_F_contig1437:13460..146721622927925.9328568-CDS-E-fasciculatus_F_contig1437:13460..14672Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1437 13461..14672 -
1695995753.599008-CDS-E-fasciculatus_F_contig1437:13460..146721695995753.599008-CDS-E-fasciculatus_F_contig1437:13460..14672Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1437 13461..14672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1437.3177.1prot_E-fasciculatus_F_contig1437.3177.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1437 13461..14672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1437.3177.1

>prot_E-fasciculatus_F_contig1437.3177.1 ID=prot_E-fasciculatus_F_contig1437.3177.1|Name=mRNA_E-fasciculatus_F_contig1437.3177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=404bp
MEDASAVLSPSKSTDGRQDFTSDTANGKRARIGTIHRPWYEKISCCCGID
RSDNSGRSRRGLMISGACLTAGIVLELIATLWAFRQAVQAGGLDGQANCD
EDGFLFMQHLSVVTQEMCSQQVDSDLFLSETGLGGDYDPCESTNSGDSSS
FLEVCSCSTDIVFDASACAWVALQNSSGVVSNDAGCLARAVEPEFPYSFV
PTFGLSECWPANPTGTAELTVTALVVALGSQLMEAVVGFRYLKDPSRGTL
LLAAASAAAACGVVAVASVLLSLPSFYAYREGYPTEVATFWLVWAAAGGA
AVGALAEFLGTEFFVAEGRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEG
ERVTTWELLRDGVVGLVTVEIAALLAMWAARFLWTRAKLLLAAKGRRGAD
DND*
back to top

mRNA from alignment at E-fasciculatus_F_contig1437:13461..14672-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1437.3177.1 ID=mRNA_E-fasciculatus_F_contig1437.3177.1|Name=mRNA_E-fasciculatus_F_contig1437.3177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1437:13461..14672- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGATGCTTCTGCCGTCCTGTCACCGTCCAAGAGCACCGATGGGAG
ACAAGATTTTACGAGCGACACCGCCAATGGCAAACGGGCACGTATCGGGA
CAATTCATCGCCCTTGGTATGAGAAAATTTCATGCTGCTGCGGAATTGAT
CGCAGTGACAATAGCGGCCGGAGCCGTCGTGGGCTCATGATTTCTGGGGC
ATGCTTGACAGCCGGAATCGTATTGGAGCTGATCGCGACCCTCTGGGCGT
TCCGCCAAGCCGTCCAAGCAGGGGGTCTGGATGGTCAGGCCAATTGCGAT
GAGGATGGATTTTTGTTTATGCAACATCTCAGCGTTGTCACGCAGGAGAT
GTGCAGCCAACAGGTCGATTCGGATCTGTTCCTGAGTGAAACAGGTTTAG
GCGGCGACTACGACCCTTGCGAATCCACGAATTCCGGGGACAGTTCATCA
TTTCTGGAGGTGTGTAGCTGCTCGACCGATATTGTTTTTGATGCGTCTGC
TTGTGCTTGGGTGGCTCTCCAAAATTCGAGCGGCGTTGTTTCGAACGACG
CTGGCTGCCTAGCGCGAGCAGTCGAACCCGAGTTTCCGTATTCCTTCGTA
CCAACGTTCGGTCTTTCCGAGTGTTGGCCGGCAAACCCTACCGGCACAGC
CGAGCTTACCGTGACCGCTCTGGTGGTAGCCCTGGGCAGTCAGCTAATGG
AGGCGGTGGTGGGCTTCCGGTACCTGAAGGACCCGTCCCGCGGCACCCTT
CTCCTCGCGGCGGCGTCAGCCGCCGCCGCTTGTGGGGTAGTGGCAGTGGC
ATCGGTGCTTCTATCACTCCCCAGCTTCTACGCCTACAGGGAAGGCTACC
CCACCGAGGTAGCGACGTTTTGGCTGGTGTGGGCAGCAGCCGGCGGCGCG
GCCGTGGGTGCCTTGGCAGAGTTTCTGGGTACGGAATTCTTCGTGGCGGA
AGGCCGGCTGCCGTACCTCGGCGCGTTCGGTAATGGGCTCGTCTGGCTGG
GCTCGGCGGCAATGGAGGTAATCGTCGCGTCGTTCCTTGTCTGGGAAGGG
GAGCGGGTCACGACCTGGGAACTCCTGAGAGACGGAGTTGTTGGTCTGGT
CACCGTCGAGATAGCCGCTTTGCTGGCGATGTGGGCCGCACGCTTTTTGT
GGACCAGGGCCAAGCTACTGTTGGCGGCCAAGGGGCGAAGGGGGGCGGAT
GATAATGACTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1437:13461..14672-

>mRNA_E-fasciculatus_F_contig1437.3177.1 ID=mRNA_E-fasciculatus_F_contig1437.3177.1|Name=mRNA_E-fasciculatus_F_contig1437.3177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2424bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1437:13461..14672- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGATGCTTCTGCCGTCCTGTCACCGTCCAAGAGCACCGATGGGAG
ACAAGATTTTACGAGCGACACCGCCAATGGCAAACGGGCACGTATCGGGA
CAATTCATCGCCCTTGGTATGAGAAAATTTCATGCTGCTGCGGAATTGAT
CGCAGTGACAATAGCGGCCGGAGCCGTCGTGGGCTCATGATTTCTGGGGC
ATGCTTGACAGCCGGAATCGTATTGGAGCTGATCGCGACCCTCTGGGCGT
TCCGCCAAGCCGTCCAAGCAGGGGGTCTGGATGGTCAGGCCAATTGCGAT
GAGGATGGATTTTTGTTTATGCAACATCTCAGCGTTGTCACGCAGGAGAT
GTGCAGCCAACAGGTCGATTCGGATCTGTTCCTGAGTGAAACAGGTTTAG
GCGGCGACTACGACCCTTGCGAATCCACGAATTCCGGGGACAGTTCATCA
TTTCTGGAGGTGTGTAGCTGCTCGACCGATATTGTTTTTGATGCGTCTGC
TTGTGCTTGGGTGGCTCTCCAAAATTCGAGCGGCGTTGTTTCGAACGACG
CTGGCTGCCTAGCGCGAGCAGTCGAACCCGAGTTTCCGTATTCCTTCGTA
CCAACGTTCGGTCTTTCCGAGTGTTGGCCGGCAAACCCTACCGGCACAGC
CGAGCTTACCGTGACCGCTCTGGTGGTAGCCCTGGGCAGTCAGCTAATGG
AGGCGGTGGTGGGCTTCCGGTACCTGAAGGACCCGTCCCGCGGCACCCTT
CTCCTCGCGGCGGCGTCAGCCGCCGCCGCTTGTGGGGTAGTGGCAGTGGC
ATCGGTGCTTCTATCACTCCCCAGCTTCTACGCCTACAGGGAAGGCTACC
CCACCGAGGTAGCGACGTTTTGGCTGGTGTGGGCAGCAGCCGGCGGCGCG
GCCGTGGGTGCCTTGGCAGAGTTTCTGGGTACGGAATTCTTCGTGGCGGA
AGGCCGGCTGCCGTACCTCGGCGCGTTCGGTAATGGGCTCGTCTGGCTGG
GCTCGGCGGCAATGGAGGTAATCGTCGCGTCGTTCCTTGTCTGGGAAGGG
GAGCGGGTCACGACCTGGGAACTCCTGAGAGACGGAGTTGTTGGTCTGGT
CACCGTCGAGATAGCCGCTTTGCTGGCGATGTGGGCCGCACGCTTTTTGT
GGACCAGGGCCAAGCTACTGTTGGCGGCCAAGGGGCGAAGGGGGGCGGAT
GATAATGACTGAATGGAAGATGCTTCTGCCGTCCTGTCACCGTCCAAGAG
CACCGATGGGAGACAAGATTTTACGAGCGACACCGCCAATGGCAAACGGG
CACGTATCGGGACAATTCATCGCCCTTGGTATGAGAAAATTTCATGCTGC
TGCGGAATTGATCGCAGTGACAATAGCGGCCGGAGCCGTCGTGGGCTCAT
GATTTCTGGGGCATGCTTGACAGCCGGAATCGTATTGGAGCTGATCGCGA
CCCTCTGGGCGTTCCGCCAAGCCGTCCAAGCAGGGGGTCTGGATGGTCAG
GCCAATTGCGATGAGGATGGATTTTTGTTTATGCAACATCTCAGCGTTGT
CACGCAGGAGATGTGCAGCCAACAGGTCGATTCGGATCTGTTCCTGAGTG
AAACAGGTTTAGGCGGCGACTACGACCCTTGCGAATCCACGAATTCCGGG
GACAGTTCATCATTTCTGGAGGTGTGTAGCTGCTCGACCGATATTGTTTT
TGATGCGTCTGCTTGTGCTTGGGTGGCTCTCCAAAATTCGAGCGGCGTTG
TTTCGAACGACGCTGGCTGCCTAGCGCGAGCAGTCGAACCCGAGTTTCCG
TATTCCTTCGTACCAACGTTCGGTCTTTCCGAGTGTTGGCCGGCAAACCC
TACCGGCACAGCCGAGCTTACCGTGACCGCTCTGGTGGTAGCCCTGGGCA
GTCAGCTAATGGAGGCGGTGGTGGGCTTCCGGTACCTGAAGGACCCGTCC
CGCGGCACCCTTCTCCTCGCGGCGGCGTCAGCCGCCGCCGCTTGTGGGGT
AGTGGCAGTGGCATCGGTGCTTCTATCACTCCCCAGCTTCTACGCCTACA
GGGAAGGCTACCCCACCGAGGTAGCGACGTTTTGGCTGGTGTGGGCAGCA
GCCGGCGGCGCGGCCGTGGGTGCCTTGGCAGAGTTTCTGGGTACGGAATT
CTTCGTGGCGGAAGGCCGGCTGCCGTACCTCGGCGCGTTCGGTAATGGGC
TCGTCTGGCTGGGCTCGGCGGCAATGGAGGTAATCGTCGCGTCGTTCCTT
GTCTGGGAAGGGGAGCGGGTCACGACCTGGGAACTCCTGAGAGACGGAGT
TGTTGGTCTGGTCACCGTCGAGATAGCCGCTTTGCTGGCGATGTGGGCCG
CACGCTTTTTGTGGACCAGGGCCAAGCTACTGTTGGCGGCCAAGGGGCGA
AGGGGGGCGGATGATAATGACTGA
back to top