mRNA_E-fasciculatus_F_contig14360.3173.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI) HSP 1 Score: 396 bits (1018), Expect = 2.690e-134 Identity = 202/213 (94.84%), Postives = 208/213 (97.65%), Query Frame = 1
Query: 7 EEEDDDVNSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQKQLRQQSLLKPKREVISQKLHPAYASKEPTFSSFAPPTIPDKVPDAMLDIPPNVVGWVIGKNGARIIDIQSKTNAAMWMNQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRPGKMGPE 645
EEE+DD+NSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKM+KRINETREEQKQLR QSLLKPKREV SQKLHPAYASK+PTFSSFAP TIPDKVPDAMLDIPPNVVGWVIGKNGARI DIQSKTNAAMWM+QNFPDGVMRKLHIHGNKQQVEAAI EVEFLMKSAPVNTPRPGKMGP+
Sbjct: 68 EEEEDDINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMIKRINETREEQKQLRTQSLLKPKREVSSQKLHPAYASKKPTFSSFAPSTIPDKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAMWMDQNFPDGVMRKLHIHGNKQQVEAAIDEVEFLMKSAPVNTPRPGKMGPK 280
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE) HSP 1 Score: 385 bits (988), Expect = 2.620e-126 Identity = 194/207 (93.72%), Postives = 202/207 (97.58%), Query Frame = 1
Query: 25 VNSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQKQLRQQSLLKPKREVISQKLHPAYASKEPTFSSFAPPTIPDKVPDAMLDIPPNVVGWVIGKNGARIIDIQSKTNAAMWMNQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRPGKMGPE 645
+NSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQK+LR QS++KPKREV +QKLHPAYASKEPTFSSFAP TIPDKVPDAMLDIPPNVVGWVIGKNGARI DIQSKTNAAMWM+QNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRP +MGP+
Sbjct: 508 INSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQKKLRTQSVVKPKREVSAQKLHPAYASKEPTFSSFAPSTIPDKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAMWMDQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRPARMGPK 714
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Match: A0A7S0S8D0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S8D0_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 1.340e-8 Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 403 MLDIPPNVVGWVIGKNGARIIDIQSKTNAAMWMNQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNT 618
++D PP +VG VIGK G I +Q+++ A + ++QNFPDGV RK+ I G VE A VE L+K PV +
Sbjct: 39 LVDCPPELVGRVIGKGGETIKGLQAQSGAHITIDQNFPDGVPRKISISGAVGCVEIASKLVEDLLKGGPVGS 110
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Match: A0A7S0KCC2_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KCC2_MICPS) HSP 1 Score: 63.5 bits (153), Expect = 2.860e-8 Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 337 ASKEPTFSSFAPPTIPDKVPDAMLDI-------PPNVVGWVIGKNGARIIDIQSKTNAAMWMNQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRPGKMGP 642
AS PT + PP P+ A +DI PP +VG VIGK G I +Q+++ A + ++QNFP+GV RK+ I G V+ A VE L+K PV R G +GP
Sbjct: 43 ASGSPTEAP--PPATPNPQSTAGMDITTNLVDCPPGLVGRVIGKGGETIKGLQAQSGAHITVDQNFPEGVPRKISISGPAGCVDIATKLVEDLLKGGPV---RSGSVGP 146
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Match: A0A7S4RG89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RG89_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 4.380e-6 Identity = 25/73 (34.25%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 397 DAMLDIPPNVVGWVIGKNGARIIDIQSKTNAAMWMNQN-FPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPV 612
+A+L++ P +VGWVIGK G RI D+ +++A +W++Q+ R +++ G K V+ A+ ++ L++ AP+
Sbjct: 217 EAILEMSPQIVGWVIGKGGQRIRDLMEESSAKIWIDQDCMTPAQYRVVYVSGLKNSVDLAVKRMQELVERAPI 289
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Match: A0A7S1ZYU7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZYU7_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 4.870e-6 Identity = 25/73 (34.25%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 397 DAMLDIPPNVVGWVIGKNGARIIDIQSKTNAAMWMNQN-FPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPV 612
+A+L++ P +VGWVIGK G RI D+ +++A +W++Q+ R +++ G K V+ A+ ++ L++ AP+
Sbjct: 400 EAILEMSPQIVGWVIGKGGQRIRDLMEESSAKIWIDQDCMTPAQYRVVYVSGLKNSVDLAVKRMQELVERAPI 472
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI) HSP 1 Score: 53.9 bits (128), Expect = 6.340e-5 Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 367 APPTIPDKVPD---AMLDIPPNVVGWVIGKNGARIIDIQSKTNAAMWMNQNFPDGVMRKLHIHG-NKQQVEAAIAEVEFLMKSAPVN 615
A PT+ ++ P ++DI P VVGWVIG++GA I +++ ++ MW++Q KL+I G + ++ AA A V L+ APVN
Sbjct: 20 AVPTVLERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKD-----LKLYITGADMPRIHAAAALVGDLISKAPVN 101 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14360.3173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14360.3173.1 >prot_E-fasciculatus_F_contig14360.3173.1 ID=prot_E-fasciculatus_F_contig14360.3173.1|Name=mRNA_E-fasciculatus_F_contig14360.3173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp DEEEEDDDVNSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDback to top mRNA from alignment at E-fasciculatus_F_contig14360:64..2716+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14360.3173.1 ID=mRNA_E-fasciculatus_F_contig14360.3173.1|Name=mRNA_E-fasciculatus_F_contig14360.3173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2653bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14360:64..2716+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14360:64..2716+ >mRNA_E-fasciculatus_F_contig14360.3173.1 ID=mRNA_E-fasciculatus_F_contig14360.3173.1|Name=mRNA_E-fasciculatus_F_contig14360.3173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14360:64..2716+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |