mRNA_E-fasciculatus_F_contig14358.3170.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: D7FU31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU31_ECTSI) HSP 1 Score: 241 bits (616), Expect = 1.350e-79 Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 3
Query: 3 PGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV 362
PGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVD LYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV
Sbjct: 90 PGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV 209
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: W7TUF4_9STRA (60s ribosomal protein l17-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF4_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.760e-43 Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 3
Query: 36 PGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGG 353
PGS+C WPQKAT+IVLD++ NAESNAE K +D D LYIVH Q NRAPKQRRRTYRAHGRINPYMSSPAH+E+IL+EK V VKK K TRKQ A+ R GGG
Sbjct: 79 PGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRV---GGG 181
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK) HSP 1 Score: 148 bits (374), Expect = 4.370e-43 Identity = 75/112 (66.96%), Postives = 91/112 (81.25%), Query Frame = 3
Query: 33 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK----KPTRKQVAKTRFVKAGGGV 356
+PG+KCRWPQKAT+IVLDL+KNAE+NAE K LD++ L + H+Q NRAPKQRRRTYRAHGRINPYMSSPAHIEL+L+E+ V KG+E + K +RKQ A+ R V GGGV
Sbjct: 77 APGNKCRWPQKATKIVLDLLKNAEANAEVKGLDIESLVVTHIQTNRAPKQRRRTYRAHGRINPYMSSPAHIELLLAEEGSNVAKGEEEEGKQLKLSRKQAARRR-VTVGGGV 187
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A485L8A8_9STRA (Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA) HSP 1 Score: 146 bits (368), Expect = 3.540e-42 Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 3
Query: 33 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGV 356
+PG KCRWPQKATRI+LDLVKNAE+NAE K LDV+ LYI H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK+ V K +EPK K +RK+ A R K+GGGV
Sbjct: 78 APGDKCRWPQKATRIILDLVKNAEANAELKGLDVEKLYIAHTQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKAAKVSRKRQAVLRL-KSGGGV 186
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A836C7U9_9STRA (Ribosomal protein L22/L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U9_9STRA) HSP 1 Score: 145 bits (366), Expect = 7.120e-42 Identity = 75/111 (67.57%), Postives = 85/111 (76.58%), Query Frame = 3
Query: 33 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRF--VKAGGGVE 359
+PG K RWPQKAT++VL LVKNAESNA +K LDVD L I H+ N AP+QRRRTYRAHGRIN YMS+P H ELIL+EK VQV K E K +RKQVA RF VK GGG+E
Sbjct: 78 APGDKVRWPQKATKVVLGLVKNAESNAVTKGLDVDKLVITHIMANHAPQQRRRTYRAHGRINAYMSTPGHFELILAEKAVQVPKAAEAPKLSRKQVAAARFKSVKVGGGLE 188
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A7S2FZJ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZJ5_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.060e-41 Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 3
Query: 27 FVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKP---TRKQVAKTRFVKAGGG 353
F +PGSK RWPQKA++I+LDL+KNAE+NAE K LDVD L +VH QCNRA +QRRRTYRAHGRINPYMS PAHIEL+L + VKK DE KK TRKQ A+ R +K+GGG
Sbjct: 104 FKAPGSKGRWPQKASKIILDLLKNAEANAEFKGLDVDDLEVVHAQCNRAQQQRRRTYRAHGRINPYMSHPAHIELVLENPKNPVKKEDEDKKVPRLTRKQQAQLR-IKSGGG 214
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A067CFI1_SAPPC (50S ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC) HSP 1 Score: 144 bits (363), Expect = 1.970e-41 Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 3
Query: 24 TFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGV 356
T +PG KCRWPQKAT+I+LDLVKNAE+NAE K LD D LYI H Q N A KQRRRTYRAHGRI PYMS+PAHIELIL+EK+ V K ++ P K +RK+ A+ R K+GGGV
Sbjct: 75 TLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRL-KSGGGV 186
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A7S2WRP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP5_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.640e-40 Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 3
Query: 33 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKG-DEPKKPTRKQVAKTRFVKAGGG 353
+PGSK RWPQKAT++VLDLVKNAE+NAE+K LD D L++ H Q NRA KQRRRTYRAHGRINPYMSSPAHIELIL+ E V K D P+K TR++ A+ R VK GGG
Sbjct: 93 APGSKGRWPQKATKVVLDLVKNAEANAETKGLDTDKLFVKHAQANRAQKQRRRTYRAHGRINPYMSSPAHIELILASIEDPVAKAEDAPQKLTRRRQAQLR-VKVGGG 199
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA) HSP 1 Score: 141 bits (355), Expect = 3.310e-40 Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 3
Query: 33 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGV 356
+PG KC+WPQKAT+I+LDLVKNAE+NAE K LD D LY+ H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK V+K D+ K K +RK+ A+ R K+GGGV
Sbjct: 78 APGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLYVSHAQANAAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRDNVQKSDDKKEVKVSRKRQAQLRL-KSGGGV 186
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA) HSP 1 Score: 139 bits (349), Expect = 2.600e-39 Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = 3
Query: 33 SPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGVE 359
+PGSK RWPQKA++IVLDL+ NAE+NAE K LD D LY+ H QCNRAP RRRTYRAHGRIN YMS PAH+E+IL+E++ V + DE P K +RK+ A+ R K GGGVE
Sbjct: 78 APGSKGRWPQKASKIVLDLLTNAEANAEVKGLDTDALYVTHTQCNRAPPGRRRTYRAHGRINAYMSQPAHVEIILTEQDDAVARADEEKPLKLSRKRKAQLRL-KQGGGVE 187 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14358.3170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14358.3170.1 >prot_E-fasciculatus_F_contig14358.3170.1 ID=prot_E-fasciculatus_F_contig14358.3170.1|Name=mRNA_E-fasciculatus_F_contig14358.3170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=93bp YRETSTSTPSCLPEASAAGLRRRPASFSTSSRTPSLTPRARHWTWTVCTSback to top mRNA from alignment at E-fasciculatus_F_contig14358:1452..3251- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14358.3170.1 ID=mRNA_E-fasciculatus_F_contig14358.3170.1|Name=mRNA_E-fasciculatus_F_contig14358.3170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1800bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14358:1452..3251- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14358:1452..3251- >mRNA_E-fasciculatus_F_contig14358.3170.1 ID=mRNA_E-fasciculatus_F_contig14358.3170.1|Name=mRNA_E-fasciculatus_F_contig14358.3170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14358:1452..3251- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |